Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee
User Details
User Details
- User Since
- Nov 27 2017, 4:37 PM (411 w, 1 d)
Sun, Oct 5
Sun, Oct 5
biology/vsearch: Update to 2.30.1
Fri, Oct 3
Fri, Oct 3
math/rapid: Deprecate
Wed, Oct 1
Wed, Oct 1
jwb committed R11:380ec0827846: net/py-google-cloud-pubsub: Python interface to Google pubsub (authored by jwb).
net/py-google-cloud-pubsub: Python interface to Google pubsub
Tue, Sep 30
Tue, Sep 30
sysutils/auto-admin: Update to 0.8.3.28
Sun, Sep 21
Sun, Sep 21
jwb committed R11:ef680967ddb6: devel/mongo-c-driver: Enable SRV option by default (authored by jwb).
devel/mongo-c-driver: Enable SRV option by default
sysutils/desktop-installer: Update to 1.1.1.4
sysutils/auto-admin: Update to 0.8.3.27
Fri, Sep 19
Fri, Sep 19
devel/cppcodec: Update to 0.2-11
Tue, Sep 16
Tue, Sep 16
x11/coreterminal: Update to 5.0.0
deskutils/coregarage: Update to 5.0.0
deskutils/libcprime: Update to 5.0.0
archivers/libarchive-qt: Update to 2.0.8
Sep 14 2025
Sep 14 2025
comms/cutecom: Update to 0.60.0-RC1
Sep 10 2025
Sep 10 2025
sysutils/desktop-installer: Update to 1.1.1.3
Sep 7 2025
Sep 7 2025
sysutils/auto-admin: Update to 0.8.3.25
Sep 6 2025
Sep 6 2025
devel/Makefile: cpp-codec -> cppcodec
Sep 5 2025
Sep 5 2025
devel/mongo-cxx-driver: MongoDB C++ driver
jwb committed R11:5679cabff6b1: devel/cppcodec: Library to encode/decode base64, base64url, etc. (authored by jwb).
devel/cppcodec: Library to encode/decode base64, base64url, etc.
Aug 26 2025
Aug 26 2025
biology/salmon: Update to tag 1.10.3
biology/ncbi-blast+: Update to 2.17.0
Aug 24 2025
Aug 24 2025
sysutils/auto-admin: Update to 0.8.3.25
Aug 21 2025
Aug 21 2025
biology/bbmap: Update to 39.34
Aug 14 2025
Aug 14 2025
sysutils/auto-admin: Update to 0.8.3.24
Aug 5 2025
Aug 5 2025
jwb added a comment to D51702: kernel: Allow unprivileged chroot by default.
It occurred to me that it might be good to set NO_NEW_PRIVS automatically when chroot is not invoked by root, rather than error out and make the user specify -n.
Aug 3 2025
Aug 3 2025
jwb added a comment to D51702: kernel: Allow unprivileged chroot by default.
For chroot(8), it seems a little cryptic to only mention security.bsd.unprivileged_chroot in the -n flag section. Might I suggest adding a paragraph like the following up-top, before the options descriptions:
Jul 27 2025
Jul 27 2025
biology/salmon: Update to tag 1.10.3
Jul 24 2025
Jul 24 2025
biology/ncbi-blast+: Update to 2.17.0
Jun 28 2025
Jun 28 2025
biology/py-pydeseq2: Update to 0.5.2
Jun 21 2025
Jun 21 2025
jwb committed R11:890b1c25be4d: biology/bcf-score: Use latest versions of hstlib and bcftools (authored by jwb).
biology/bcf-score: Use latest versions of hstlib and bcftools
jwb committed R11:49752ef6cd89: biology/bio-mocha: Use latest versions of htslib and bcftools (authored by jwb).
biology/bio-mocha: Use latest versions of htslib and bcftools
jwb committed R11:14102a0178f9: biology/minimap2: Remove extraneous file that snuck in the last commit (authored by jwb).
biology/minimap2: Remove extraneous file that snuck in the last commit
Jun 16 2025
Jun 16 2025
biology/minimap2: Update to 2.30
Jun 14 2025
Jun 14 2025
devel/isa-l: Enable build on aarch64
Jun 11 2025
Jun 11 2025
jwb committed R11:e91e2f54bddb: biology/py-pydeseq2: Python reimplementation of the DESeq2 R package (authored by jwb).
biology/py-pydeseq2: Python reimplementation of the DESeq2 R package
jwb committed R11:cfe792f0ddf0: math/py-formulaic-contrasts: Build arbitrary contrasts formulaic models (authored by jwb).
math/py-formulaic-contrasts: Build arbitrary contrasts formulaic models
devel/py-joblib: Unbreak build
Jun 7 2025
Jun 7 2025
biology/fastp: Update to 0.26.0
Jun 5 2025
Jun 5 2025
sysutils/auto-admin: Update to 0.8.3.7
Jun 4 2025
Jun 4 2025
biology/seqtk: Update to 1.5
biology/bcftools: Update to 1.22
biology/samtools: Update to 1.22
biology/htslib: Update to 1.22
Jun 1 2025
Jun 1 2025
biology/fastp: Update to 0.25.0
May 30 2025
May 30 2025
biology/fastp: Update to 0.24.3
May 27 2025
May 27 2025
jwb committed R11:b15df322b48c: biology/kallisto: Remove USE_GCC, fix build with clang19 (authored by jwb).
biology/kallisto: Remove USE_GCC, fix build with clang19
jwb committed R11:bba37490f132: biology/bifrost: Remove USE_GCC, fix build with clang19 (authored by jwb).
biology/bifrost: Remove USE_GCC, fix build with clang19
May 25 2025
May 25 2025
biology/fasda: Update to 0.2.0.1
May 23 2025
May 23 2025
biology/megahit: Update to 1.2.9.20
May 20 2025
May 20 2025
biology/haplohseq: Update to 0.1.2.3
jwb committed R11:bd2f753fe114: biology/lamarc: New maintainer hayzam@alchemilla.io (authored by jwb).
biology/lamarc: New maintainer hayzam@alchemilla.io
biology/lamarc: Unbreak build on 14.x
May 19 2025
May 19 2025
biology/bamtools: Update to 2.5.3
May 15 2025
May 15 2025
biology/vcftools: Update to 0.1.17
biology/kallisto: Unbreak build on 15-CURRENT
biology/bifrost: Unbreak build on 15-CURRENT
May 8 2025
May 8 2025
sysutils/desktop-installer: Update to 1.1.1
sysutils/auto-admin: Update to 0.8.3
May 5 2025
May 5 2025
biology/fasda-utils: Update to 0.1.0.2
May 4 2025
May 4 2025
jwb committed R11:1a7bd4d40277: sysutils/linux-miniconda-installer: Update to 0.1.0.6 (authored by jwb).
sysutils/linux-miniconda-installer: Update to 0.1.0.6
jwb committed R11:3a58d96ad5ab: sysutils/linux-miniconda-installer: Update to 0.1.0.4 (authored by jwb).
sysutils/linux-miniconda-installer: Update to 0.1.0.4
Apr 30 2025
Apr 30 2025
sysutils/auto-admin: Update to 0.8.2
biology/fastq-trim: Update to 0.1.4
Apr 28 2025
Apr 28 2025
biology/fasda-utils: Update to 0.1.0.1
biology/vcflib: Update to 1.0.13
Apr 26 2025
Apr 26 2025
biology/biolibc-tools: Update to 0.1.5
biology/fasda: Update to 0.2.0
biology/biolibc: Update to 0.2.7
devel/libxtend: Update to 0.2.1
Apr 20 2025
Apr 20 2025
biology/minimap2: Update to 2.29
Apr 17 2025
Apr 17 2025
biology/fastp: Update to 0.24.1
Apr 16 2025
Apr 16 2025
sysutils/diskimage-tools: Unbreak build
Apr 6 2025
Apr 6 2025
jwb committed R11:cc15cab2da4c: biology/fasda-utils: Fast and simple differential analysis extras (authored by jwb).
biology/fasda-utils: Fast and simple differential analysis extras
Mar 27 2025
Mar 27 2025
biology/subread: Update to 2.1.0
Mar 21 2025
Mar 21 2025
biology/sra-tools: Update to 3.2.1
Mar 19 2025
Mar 19 2025
biology/py-macs3: Unbreak package build
Mar 13 2025
Mar 13 2025
sysutils/desktop-installer: Update to 1.1.0.6
science/csvtk: Update to 0.33.0
Mar 11 2025
Mar 11 2025
math/py-hmmlearn: Unbreak poudriere build
Mar 7 2025
Mar 7 2025
biology/py-macs3: Update to 3.0.3
Mar 6 2025
Mar 6 2025
biology/ncbi-blast+: Update to 2.16.0_3
Mar 4 2025
Mar 4 2025
biology/py-crossmap: Update to 0.7.3
Mar 2 2025
Mar 2 2025
biology/vsearch: Update to 2.30.0
Feb 21 2025
Feb 21 2025
jwb committed R11:d758b1caa19e: Multiple biology ports: Replace pypi homepage with github (authored by jwb).
Multiple biology ports: Replace pypi homepage with github
Feb 18 2025
Feb 18 2025
biology/freebayes: Update to 1.3.9
biology/tabixpp: Undeprecate and update to 1.1.2
biology/tabixpp: Update to 1.1.2
jwb committed R11:03b4820d4c5b: devel/intervaltree: Minimal C++ interval tree implementation (authored by jwb).
devel/intervaltree: Minimal C++ interval tree implementation
Feb 16 2025
Feb 16 2025
biology/vsearch: Update to 2.29.4
archivers/vbz-compression: Update to 1.0.13
Feb 12 2025
Feb 12 2025
sysutils/desktop-installer: Update to 1.1.0.5
Feb 8 2025
Feb 8 2025
sysutils/desktop-installer: Update to 1.1.0.2
Feb 4 2025
Feb 4 2025
sysutils/desktop-installer: Update to 1.1.0
sysutils/auto-admin: Update to 0.8.1
textproc/xml-format: Add missing dep
Feb 3 2025
Feb 3 2025
textproc/xml-format: Update to 0.2.0.3
sysutils/mcweject: Deprecate
sysutils/endian: Update to 1.1.6
sysutils/diskimage-tools: Update to 0.3.1.1
math/matlab-installer: Deprecate
math/matlab-installer: Deprecate