jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since: Nov 27 2017, 4:37 PM (392 w, 1 d)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity
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Sun, Jun 1

jwb committed R11:78e546084e93: biology/fastp: Update to 0.25.0 (authored by jwb).

biology/fastp: Update to 0.25.0

Sun, Jun 1, 1:28 PM

Fri, May 30

jwb committed R11:b3918a5e6eea: biology/fastp: Update to 0.24.3 (authored by jwb).

biology/fastp: Update to 0.24.3

Fri, May 30, 1:07 PM

Tue, May 27

jwb committed R11:b15df322b48c: biology/kallisto: Remove USE_GCC, fix build with clang19 (authored by jwb).

biology/kallisto: Remove USE_GCC, fix build with clang19

Tue, May 27, 2:20 PM

jwb committed R11:bba37490f132: biology/bifrost: Remove USE_GCC, fix build with clang19 (authored by jwb).

biology/bifrost: Remove USE_GCC, fix build with clang19

Tue, May 27, 2:09 PM

Sun, May 25

jwb committed R11:7611c373bf8f: biology/fasda: Update to 0.2.0.1 (authored by jwb).

biology/fasda: Update to 0.2.0.1

Sun, May 25, 2:27 PM

Fri, May 23

jwb committed R11:b3b1a391c149: biology/megahit: Update to 1.2.9.20 (authored by jwb).

biology/megahit: Update to 1.2.9.20

Fri, May 23, 12:34 PM

Tue, May 20

jwb committed R11:51c1f17ce70a: biology/haplohseq: Update to 0.1.2.3 (authored by jwb).

biology/haplohseq: Update to 0.1.2.3

Tue, May 20, 11:33 PM

jwb committed R11:bd2f753fe114: biology/lamarc: New maintainer hayzam@alchemilla.io (authored by jwb).

biology/lamarc: New maintainer hayzam@alchemilla.io

Tue, May 20, 11:17 PM

jwb committed R11:ba0d68b692fc: biology/lamarc: Unbreak build on 14.x (authored by jwb).

biology/lamarc: Unbreak build on 14.x

Tue, May 20, 11:32 AM

Mon, May 19

jwb committed R11:101f13edbc07: biology/bamtools: Update to 2.5.3 (authored by jwb).

biology/bamtools: Update to 2.5.3

Mon, May 19, 9:23 PM

Thu, May 15

jwb committed R11:3ae8b09ca041: biology/vcftools: Update to 0.1.17 (authored by jwb).

biology/vcftools: Update to 0.1.17

Thu, May 15, 12:29 PM

jwb committed R11:18cabe581ff1: biology/kallisto: Unbreak build on 15-CURRENT (authored by jwb).

biology/kallisto: Unbreak build on 15-CURRENT

Thu, May 15, 11:46 AM

jwb committed R11:40478d7acd2a: biology/bifrost: Unbreak build on 15-CURRENT (authored by jwb).

biology/bifrost: Unbreak build on 15-CURRENT

Thu, May 15, 11:39 AM

Thu, May 8

jwb committed R11:c3626a7f1664: sysutils/desktop-installer: Update to 1.1.1 (authored by jwb).

sysutils/desktop-installer: Update to 1.1.1

Thu, May 8, 9:44 PM

jwb committed R11:a654249b48c6: sysutils/auto-admin: Update to 0.8.3 (authored by jwb).

sysutils/auto-admin: Update to 0.8.3

Thu, May 8, 9:43 PM

Mon, May 5

jwb committed R11:9a23beadaa33: biology/fasda-utils: Update to 0.1.0.2 (authored by jwb).

biology/fasda-utils: Update to 0.1.0.2

Mon, May 5, 9:46 PM

May 4 2025

jwb committed R11:1a7bd4d40277: sysutils/linux-miniconda-installer: Update to 0.1.0.6 (authored by jwb).

sysutils/linux-miniconda-installer: Update to 0.1.0.6

May 4 2025, 12:35 PM

jwb committed R11:3a58d96ad5ab: sysutils/linux-miniconda-installer: Update to 0.1.0.4 (authored by jwb).

sysutils/linux-miniconda-installer: Update to 0.1.0.4

May 4 2025, 12:27 PM

Apr 30 2025

jwb committed R11:f34a8493a4c4: sysutils/auto-admin: Update to 0.8.2 (authored by jwb).

sysutils/auto-admin: Update to 0.8.2

Apr 30 2025, 11:15 AM

jwb committed R11:b5fed385507c: biology/fastq-trim: Update to 0.1.4 (authored by jwb).

biology/fastq-trim: Update to 0.1.4

Apr 30 2025, 11:12 AM

Apr 28 2025

jwb committed R11:6034a63dcea9: biology/fasda-utils: Update to 0.1.0.1 (authored by jwb).

biology/fasda-utils: Update to 0.1.0.1

Apr 28 2025, 3:43 PM

jwb committed R11:39b2e62d29fa: biology/vcflib: Update to 1.0.13 (authored by jwb).

biology/vcflib: Update to 1.0.13

Apr 28 2025, 11:43 AM

Apr 26 2025

jwb committed R11:0bef7dda8ca9: biology/biolibc-tools: Update to 0.1.5 (authored by jwb).

biology/biolibc-tools: Update to 0.1.5

Apr 26 2025, 8:41 PM

jwb committed R11:aa9df88f1c31: biology/fasda: Update to 0.2.0 (authored by jwb).

biology/fasda: Update to 0.2.0

Apr 26 2025, 8:39 PM

jwb committed R11:f680350d5ef9: biology/biolibc: Update to 0.2.7 (authored by jwb).

biology/biolibc: Update to 0.2.7

Apr 26 2025, 8:37 PM

jwb committed R11:cff47c67ef95: devel/libxtend: Update to 0.2.1 (authored by jwb).

devel/libxtend: Update to 0.2.1

Apr 26 2025, 8:35 PM

Apr 20 2025

jwb committed R11:cdd5a51ea04a: biology/minimap2: Update to 2.29 (authored by jwb).

biology/minimap2: Update to 2.29

Apr 20 2025, 1:19 PM

Apr 17 2025

jwb committed R11:b3f6f8596df4: biology/fastp: Update to 0.24.1 (authored by jwb).

biology/fastp: Update to 0.24.1

Apr 17 2025, 12:52 PM

Apr 16 2025

jwb committed R11:6d74c851a644: sysutils/diskimage-tools: Unbreak build (authored by jwb).

sysutils/diskimage-tools: Unbreak build

Apr 16 2025, 4:42 PM

Apr 6 2025

jwb committed R11:cc15cab2da4c: biology/fasda-utils: Fast and simple differential analysis extras (authored by jwb).

biology/fasda-utils: Fast and simple differential analysis extras

Apr 6 2025, 11:28 AM

Mar 27 2025

jwb committed R11:888c0b0e32d3: biology/subread: Update to 2.1.0 (authored by jwb).

biology/subread: Update to 2.1.0

Mar 27 2025, 10:06 PM

Mar 21 2025

jwb committed R11:a57f4b8deadd: biology/sra-tools: Update to 3.2.1 (authored by jwb).

biology/sra-tools: Update to 3.2.1

Mar 21 2025, 11:29 AM

Mar 19 2025

jwb committed R11:da25ff8f31cd: biology/py-macs3: Unbreak package build (authored by jwb).

biology/py-macs3: Unbreak package build

Mar 19 2025, 1:46 PM

Mar 13 2025

jwb committed R11:2e67831b3ea0: sysutils/desktop-installer: Update to 1.1.0.6 (authored by jwb).

sysutils/desktop-installer: Update to 1.1.0.6

Mar 13 2025, 4:36 PM

jwb committed R11:655c50cfc53d: science/csvtk: Update to 0.33.0 (authored by jwb).

science/csvtk: Update to 0.33.0

Mar 13 2025, 12:37 PM

Mar 11 2025

jwb committed R11:a7c9cc2b093f: math/py-hmmlearn: Unbreak poudriere build (authored by jwb).

math/py-hmmlearn: Unbreak poudriere build

Mar 11 2025, 2:56 PM

Mar 7 2025

jwb committed R11:c2d10be9f215: biology/py-macs3: Update to 3.0.3 (authored by jwb).

biology/py-macs3: Update to 3.0.3

Mar 7 2025, 2:30 PM

Mar 6 2025

jwb committed R11:8de761e7d400: biology/ncbi-blast+: Update to 2.16.0_3 (authored by jwb).

biology/ncbi-blast+: Update to 2.16.0_3

Mar 6 2025, 12:44 PM

Mar 4 2025

jwb committed R11:886844b5ecf8: biology/py-crossmap: Update to 0.7.3 (authored by jwb).

biology/py-crossmap: Update to 0.7.3

Mar 4 2025, 1:15 PM

Mar 2 2025

jwb committed R11:84399cefee34: biology/vsearch: Update to 2.30.0 (authored by jwb).

biology/vsearch: Update to 2.30.0

Mar 2 2025, 12:38 PM

Feb 21 2025

jwb committed R11:d758b1caa19e: Multiple biology ports: Replace pypi homepage with github (authored by jwb).

Multiple biology ports: Replace pypi homepage with github

Feb 21 2025, 1:05 PM

Feb 18 2025

jwb committed R11:bac90e855c13: biology/freebayes: Update to 1.3.9 (authored by jwb).

biology/freebayes: Update to 1.3.9

Feb 18 2025, 8:47 PM

jwb committed R11:813f71aa155a: biology/tabixpp: Undeprecate and update to 1.1.2 (authored by jwb).

biology/tabixpp: Undeprecate and update to 1.1.2

Feb 18 2025, 3:40 PM

jwb committed R11:38e86db59cdc: biology/tabixpp: Update to 1.1.2 (authored by jwb).

biology/tabixpp: Update to 1.1.2

Feb 18 2025, 3:40 PM

jwb committed R11:03b4820d4c5b: devel/intervaltree: Minimal C++ interval tree implementation (authored by jwb).

devel/intervaltree: Minimal C++ interval tree implementation

Feb 18 2025, 2:57 PM

Feb 16 2025

jwb committed R11:4bbc35807790: biology/vsearch: Update to 2.29.4 (authored by jwb).

biology/vsearch: Update to 2.29.4

Feb 16 2025, 2:21 PM

jwb committed R11:ef08ef1262c3: archivers/vbz-compression: Update to 1.0.13 (authored by jwb).

archivers/vbz-compression: Update to 1.0.13

Feb 16 2025, 1:18 PM

Feb 12 2025

jwb committed R11:ac235c50dc8f: sysutils/desktop-installer: Update to 1.1.0.5 (authored by jwb).

sysutils/desktop-installer: Update to 1.1.0.5

Feb 12 2025, 7:24 PM

Feb 8 2025

jwb committed R11:f0a998aad6e9: sysutils/desktop-installer: Update to 1.1.0.2 (authored by jwb).

sysutils/desktop-installer: Update to 1.1.0.2

Feb 8 2025, 5:59 PM

Feb 4 2025

jwb committed R11:222db315a10a: sysutils/desktop-installer: Update to 1.1.0 (authored by jwb).

sysutils/desktop-installer: Update to 1.1.0

Feb 4 2025, 4:05 PM

jwb committed R11:fa1e2038c23b: sysutils/auto-admin: Update to 0.8.1 (authored by jwb).

sysutils/auto-admin: Update to 0.8.1

Feb 4 2025, 4:05 PM

jwb committed R11:be795d728897: textproc/xml-format: Add missing dep (authored by jwb).

textproc/xml-format: Add missing dep

Feb 4 2025, 12:49 PM

Feb 3 2025

jwb committed R11:d426cea9b31c: textproc/xml-format: Update to 0.2.0.3 (authored by jwb).

textproc/xml-format: Update to 0.2.0.3

Feb 3 2025, 11:17 PM

jwb committed R11:aa76d692b293: sysutils/mcweject: Deprecate (authored by jwb).

sysutils/mcweject: Deprecate

Feb 3 2025, 11:10 PM

jwb committed R11:4c7ab59d2705: sysutils/endian: Update to 1.1.6 (authored by jwb).

sysutils/endian: Update to 1.1.6

Feb 3 2025, 11:08 PM

jwb committed R11:97b7e676be66: sysutils/diskimage-tools: Update to 0.3.1.1 (authored by jwb).

sysutils/diskimage-tools: Update to 0.3.1.1

Feb 3 2025, 10:26 PM

jwb committed R11:10a5ec03125f: math/matlab-installer: Deprecate (authored by jwb).

math/matlab-installer: Deprecate

Feb 3 2025, 10:08 PM

jwb committed R11:4a351aa5583d: math/matlab-installer: Deprecate (authored by jwb).

math/matlab-installer: Deprecate

Feb 3 2025, 9:27 PM

jwb committed R11:379a571b580c: devel/roboctl: Update to 0.3.9.4 (authored by jwb).

devel/roboctl: Update to 0.3.9.4

Feb 3 2025, 4:45 PM

jwb committed R11:d6270774dbd2: www/webbrowser: Update to 0.4.0 (authored by jwb).

www/webbrowser: Update to 0.4.0

Feb 3 2025, 3:48 PM

jwb committed R11:4f5877361b25: devel/libgamepad: Update to 0.1.2.4 (authored by jwb).

devel/libgamepad: Update to 0.1.2.4

Feb 3 2025, 3:39 PM

Jan 29 2025

jwb committed R11:bb5aff4439a5: biology/sra-tools: Update to 3.2.0 (authored by jwb).

biology/sra-tools: Update to 3.2.0

Jan 29 2025, 8:20 PM

Jan 25 2025

jwb committed R11:2889989be020: biology/mmseqs2: Update to 17.b804.f (authored by jwb).

biology/mmseqs2: Update to 17.b804.f

Jan 25 2025, 1:24 PM

Jan 21 2025

jwb committed R11:88365ea6e44a: science/packmol: Update to 20.15.3 (authored by jwb).

science/packmol: Update to 20.15.3

Jan 21 2025, 3:19 PM

Jan 20 2025

jwb committed R11:e241945e9d86: devel/R-cran-optparse: Update to 1.7.5 (authored by jwb).

devel/R-cran-optparse: Update to 1.7.5

Jan 20 2025, 7:35 PM

Jan 19 2025

jwb committed R11:cad392241a59: biology/subread: Update to 2.0.8 (authored by jwb).

biology/subread: Update to 2.0.8

Jan 19 2025, 12:50 PM

Jan 17 2025

jwb committed R11:e3e3bee19927: biology/stacks: Update to 2.68 (authored by jwb).

biology/stacks: Update to 2.68

Jan 17 2025, 10:40 PM

Jan 16 2025

jwb committed R11:695d1ac4d136: biology/py-bcbio-gff: Update to 0.7.1 (authored by jwb).

biology/py-bcbio-gff: Update to 0.7.1

Jan 16 2025, 1:00 PM

jwb committed R11:25e2eac767b4: biology/bbmap: Update to 39.15 (authored by jwb).

biology/bbmap: Update to 39.15

Jan 16 2025, 12:42 PM

Jan 15 2025

jwb committed R11:4fd08b5074ce: biology/mmseqs2: Update to 16.747.c6 (authored by jwb).

biology/mmseqs2: Update to 16.747.c6

Jan 15 2025, 3:08 PM

Jan 14 2025

jwb committed R11:b324d354c77d: biology/ncbi-blast+: Update to 2.16.0 (authored by jwb).

biology/ncbi-blast+: Update to 2.16.0

Jan 14 2025, 5:47 PM

jwb committed R11:b79289d3706a: archivers/vbz-compression: Update to 1.0.12 (authored by jwb).

archivers/vbz-compression: Update to 1.0.12

Jan 14 2025, 2:22 PM

jwb committed R11:ddf239b5eee8: archivers/streamvbyte: Update to 2.0.0 (authored by jwb).

archivers/streamvbyte: Update to 2.0.0

Jan 14 2025, 1:13 PM

Jan 13 2025

jwb committed R11:1f224e0bb61a: biology/bbmap: Update to 39.14 (authored by jwb).

biology/bbmap: Update to 39.14

Jan 13 2025, 9:57 PM

jwb committed R11:3258874a89d6: science/csvtk: Update to 0.32.0 (authored by jwb).

science/csvtk: Update to 0.32.0

Jan 13 2025, 1:44 PM

Dec 29 2024

jwb committed R11:cafc58d02dee: biology/vsearch: Update to 2.29.2 (authored by jwb).

biology/vsearch: Update to 2.29.2

Dec 29 2024, 8:59 PM

Dec 12 2024

jwb committed R11:1f91b7d817f6: biology/py-multiqc: Add missing py-natsort RUN_DEPEND (authored by jwb).

biology/py-multiqc: Add missing py-natsort RUN_DEPEND

Dec 12 2024, 2:53 PM

jwb committed R11:7e69f83edba6: graphics/py-spectra: Add missing py-colormath RUN_DEPEND (authored by jwb).

graphics/py-spectra: Add missing py-colormath RUN_DEPEND

Dec 12 2024, 2:46 PM

Dec 6 2024

jwb committed R11:c543b2f67456: security/hidden-lake: F2F Anonymous network based on the QB-problem (authored by jwb).

security/hidden-lake: F2F Anonymous network based on the QB-problem

Dec 6 2024, 11:18 PM

jwb committed R11:0e30cf43051d: biology/gemma: Update to 0.98.5 (authored by jwb).

biology/gemma: Update to 0.98.5

Dec 6 2024, 2:39 PM

Dec 3 2024

jwb committed R11:12b5c3c8f16f: biology/fasttree: Update to 2.1.11 (authored by jwb).

biology/fasttree: Update to 2.1.11

Dec 3 2024, 2:55 PM

Nov 28 2024

jwb committed R11:9cb153ab3484: biology/ucsc-userapps: Update to v474 (authored by jwb).

biology/ucsc-userapps: Update to v474

Nov 28 2024, 3:59 PM

jwb committed R11:1c5c1f0c3a2e: py-htseq: New maintainer (authored by jwb).

py-htseq: New maintainer

Nov 28 2024, 12:23 PM

Nov 27 2024

jwb committed R11:b07c925f99cf: biology/py-htseq: Update to 2.0.9 (authored by jwb).

biology/py-htseq: Update to 2.0.9

Nov 27 2024, 1:46 PM

Nov 25 2024

jwb committed R11:3f6b18bb3857: biology/vcflib: Update to 1.0.12 (authored by jwb).

biology/vcflib: Update to 1.0.12

Nov 25 2024, 2:50 PM

Nov 24 2024

jwb committed R11:1c58b378342d: preseq: Not for 32-bit platforms (authored by jwb).

preseq: Not for 32-bit platforms

Nov 24 2024, 1:52 PM

jwb committed R11:482229547aae: bwa: New maintainer (authored by jwb).

bwa: New maintainer

Nov 24 2024, 1:38 PM

jwb committed R11:f488a27c4d56: biology/bwa: Update to 0.7.18 (authored by jwb).

biology/bwa: Update to 0.7.18

Nov 24 2024, 1:36 PM

Nov 22 2024

jwb committed R11:ea071869c7ee: graphics/py-plotly: Fix mangled pkg-descr (authored by jwb).

graphics/py-plotly: Fix mangled pkg-descr

Nov 22 2024, 8:58 PM

jwb committed R11:af7a74db0001: biology/preseq: Predict yield of distinct reads from a genomic library (authored by jwb).

biology/preseq: Predict yield of distinct reads from a genomic library

Nov 22 2024, 8:36 PM

Nov 21 2024

jwb committed R11:b52db326a636: biology/py-multiqc: Update to 1.25.2 (authored by jwb).

biology/py-multiqc: Update to 1.25.2

Nov 21 2024, 3:06 PM

jwb committed R11:c45dd57f7783: sysutils/devd-mount: CONFLICTS -> CONFLICTS_INSTALL (authored by jwb).

sysutils/devd-mount: CONFLICTS -> CONFLICTS_INSTALL

Nov 21 2024, 1:36 PM

jwb committed R11:628057b37dd8: filesystems/automount: Add CONFLICTS_INSTALL=devd-mount (authored by jwb).

filesystems/automount: Add CONFLICTS_INSTALL=devd-mount

Nov 21 2024, 1:34 PM

jwb committed R11:89d7d886562b: sysutils/devd-mount: Add CONFLICTS=automount (authored by jwb).

sysutils/devd-mount: Add CONFLICTS=automount

Nov 21 2024, 1:21 PM

Nov 19 2024

jwb committed R11:0569f9b878c0: deskutils/freebsd-update-notify: Update to 0.1.1.11 (authored by jwb).

deskutils/freebsd-update-notify: Update to 0.1.1.11

Nov 19 2024, 12:17 AM

Nov 17 2024

jwb committed R11:2c0b2c08a023: biology/sra-tools: Update to 3.1.1 (authored by jwb).

biology/sra-tools: Update to 3.1.1

Nov 17 2024, 11:44 PM

jwb committed R11:1d5f35837c78: deskutils/freebsd-update-notify: Update to 0.1.1.8 (authored by jwb).

deskutils/freebsd-update-notify: Update to 0.1.1.8

Nov 17 2024, 3:36 PM

jwb committed R11:1e15e2444825: deskutils/freebsd-update-notify: Update to 0.1.1.7 (authored by jwb).

deskutils/freebsd-update-notify: Update to 0.1.1.7

Nov 17 2024, 12:57 PM

Nov 16 2024

jwb committed R11:c5ab2a593af4: biology/sra-tools: Quick fix to unbreak build (authored by jwb).

biology/sra-tools: Quick fix to unbreak build

Nov 16 2024, 2:58 PM

jwb committed R11:c4c5b085262d: biology/fastp: Update to 0.24.0 (authored by jwb).

biology/fastp: Update to 0.24.0

Nov 16 2024, 1:13 PM

jwb (jwb@freebsd.org)Scientific computing instructor, bioinformatics consultant