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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (304 w, 3 d)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity

Mon, Sep 11

jwb committed R11:c8c772b79247: sysutils/runas: Run a command as another user (authored by jwb).
sysutils/runas: Run a command as another user
Mon, Sep 11, 1:53 PM
jwb committed R11:eb34a410cdcf: sysutils/desktop-installer: Update to 0.8.2.2 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.2.2
Mon, Sep 11, 1:21 PM

Sun, Sep 10

jwb committed R11:8abd028788bc: biology/pooler: Update to 1.88 (authored by jwb).
biology/pooler: Update to 1.88
Sun, Sep 10, 1:10 PM

Thu, Aug 31

jwb committed R11:d276cdd564ab: deskutils/freebsd-update-notify: Update to 0.1.1.2 (authored by jwb).
deskutils/freebsd-update-notify: Update to 0.1.1.2
Thu, Aug 31, 3:35 AM
jwb committed R11:8740fd954503: sysutils/auto-admin: Update to 0.7.18.7 (authored by jwb).
sysutils/auto-admin: Update to 0.7.18.7
Thu, Aug 31, 3:35 AM

Aug 26 2023

jwb committed R11:6a0747976346: biology/ncbi-blast+: Update to 2.14.1 (authored by jwb).
biology/ncbi-blast+: Update to 2.14.1
Aug 26 2023, 12:57 PM

Aug 21 2023

jwb committed R11:0e8f22496e31: biology/star: Fix SIMD issue on non-amd64 (authored by jwb).
biology/star: Fix SIMD issue on non-amd64
Aug 21 2023, 2:35 PM

Aug 17 2023

jwb committed R11:a382bcefaf86: biology/star: Update to 2.7.11a (authored by jwb).
biology/star: Update to 2.7.11a
Aug 17 2023, 4:05 PM

Aug 12 2023

jwb committed R11:f38473fec0a8: biology/bifrost: Control -march via CPUTYPE make variable (authored by jwb).
biology/bifrost: Control -march via CPUTYPE make variable
Aug 12 2023, 2:42 PM

Aug 11 2023

jwb committed R11:9b09bd902830: biology/peak-classifier: Update to 0.1.4.11 (authored by jwb).
biology/peak-classifier: Update to 0.1.4.11
Aug 11 2023, 8:45 PM
jwb committed R11:67773b0db360: biology/fasda: Update to 0.1.4 (authored by jwb).
biology/fasda: Update to 0.1.4
Aug 11 2023, 8:45 PM
jwb committed R11:e9b6ad4f597e: biology/biolibc-tools: Update to 0.1.4.9 (authored by jwb).
biology/biolibc-tools: Update to 0.1.4.9
Aug 11 2023, 8:45 PM
jwb committed R11:3f56c9a9dcdd: devel/libxtend: Update to 0.1.9 (authored by jwb).
devel/libxtend: Update to 0.1.9
Aug 11 2023, 8:45 PM
jwb committed R11:c978aad1b084: biology/biolibc: Update to 0.2.5 (authored by jwb).
biology/biolibc: Update to 0.2.5
Aug 11 2023, 8:45 PM

Aug 10 2023

jwb committed R11:0f2f80ca3833: biology/sra-tools: Update to 3.0.6 (authored by jwb).
biology/sra-tools: Update to 3.0.6
Aug 10 2023, 5:20 PM

Aug 9 2023

jwb committed R11:577a373656a6: sysutils/desktop-installer: Update to 0.8.2 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.2
Aug 9 2023, 1:58 PM
jwb committed R11:691d5857000a: deskutils/freebsd-update-notify: Update to 0.1.1 (authored by jwb).
deskutils/freebsd-update-notify: Update to 0.1.1
Aug 9 2023, 1:44 PM
jwb committed R11:8a990782456e: sysutils/auto-admin: Update to 0.7.18.3 (authored by jwb).
sysutils/auto-admin: Update to 0.7.18.3
Aug 9 2023, 1:37 PM

Aug 7 2023

jwb committed R11:a308d510eb14: sysutils/devd-mount: Update to 0.1.0.7 (authored by jwb).
sysutils/devd-mount: Update to 0.1.0.7
Aug 7 2023, 5:14 PM

Aug 6 2023

jwb committed R11:80b5ad227550: x11-themes/lumina-themes: Adopt port (authored by jwb).
x11-themes/lumina-themes: Adopt port
Aug 6 2023, 10:01 PM
jwb committed R11:fb487e6a5610: x11/lumina-core: Expand battery icon notification (authored by jwb).
x11/lumina-core: Expand battery icon notification
Aug 6 2023, 9:57 PM
jwb committed R11:d25fa2e8d52f: devel/yaggo: Update to 1.5.11 (authored by jwb).
devel/yaggo: Update to 1.5.11
Aug 6 2023, 7:42 PM
jwb committed R11:e97c3457489f: biology/py-macs2: Update to 2.2.9.1 (authored by jwb).
biology/py-macs2: Update to 2.2.9.1
Aug 6 2023, 6:18 PM
jwb committed R11:822fdafc3e69: devel/py-cykhash: CHEESESHOP -> PYPI (authored by jwb).
devel/py-cykhash: CHEESESHOP -> PYPI
Aug 6 2023, 5:58 PM
jwb committed R11:36f9e292e5d2: devel/Makefile: Add py-cykhash (authored by jwb).
devel/Makefile: Add py-cykhash
Aug 6 2023, 3:36 PM
jwb committed R11:21e0240b8fe6: devel/py-cykhash: Cython equivalent to khash-sets/maps (authored by jwb).
devel/py-cykhash: Cython equivalent to khash-sets/maps
Aug 6 2023, 3:36 PM

Aug 5 2023

jwb committed R11:322706681cac: p5-transdecoder: Update to 5.7.1 (authored by jwb).
p5-transdecoder: Update to 5.7.1
Aug 5 2023, 9:00 PM
jwb committed R11:fa7be670b40b: biology/py-htseq: Update to 2.0.4 (authored by jwb).
biology/py-htseq: Update to 2.0.4
Aug 5 2023, 4:41 PM
jwb committed R11:a084c0b08822: biology/py-multiqc: Update to 1.15 (authored by jwb).
biology/py-multiqc: Update to 1.15
Aug 5 2023, 4:20 PM

Jul 31 2023

jwb committed R11:abf65f917805: deskutils/freebsd-update-notify: Desktop notification for av. updates (authored by jwb).
deskutils/freebsd-update-notify: Desktop notification for av. updates
Jul 31 2023, 3:25 PM
jwb committed R11:3a654ece10c9: biology/rna-seq: Add biology/star dep to metaport (authored by jwb).
biology/rna-seq: Add biology/star dep to metaport
Jul 31 2023, 2:37 PM

Jul 28 2023

jwb committed R11:505bb0df2b00: biology/py-htseq: Python library for sequence analysis (authored by jwb).
biology/py-htseq: Python library for sequence analysis
Jul 28 2023, 3:43 PM
jwb committed R11:3ef8325ef676: biology/atac-seq: Add curl to metaport deps (authored by jwb).
biology/atac-seq: Add curl to metaport deps
Jul 28 2023, 2:36 PM
jwb committed R11:74b4fa60b326: biology/rna-seq: Add curl to metaport deps (authored by jwb).
biology/rna-seq: Add curl to metaport deps
Jul 28 2023, 2:33 PM

Jul 24 2023

jwb committed R11:ddc812686212: biology/kallisto: Clean up build (authored by jwb).
biology/kallisto: Clean up build
Jul 24 2023, 6:22 PM
jwb committed R11:24377618fdcc: biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processors (authored by jwb).
biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processors
Jul 24 2023, 6:21 PM
jwb committed R11:546ae89fe34b: biology/star: Set NOT_FOR_ARCHS to all 32-bit processors (authored by jwb).
biology/star: Set NOT_FOR_ARCHS to all 32-bit processors
Jul 24 2023, 6:21 PM

Jul 21 2023

jwb committed R11:64a6421c248a: biology/salmon: Transcript-level quantification of RNA-seq (authored by jwb).
biology/salmon: Transcript-level quantification of RNA-seq
Jul 21 2023, 11:07 PM
jwb committed R11:85c124c30237: biology/star: Update to 2.7.10b (authored by jwb).
biology/star: Update to 2.7.10b
Jul 21 2023, 4:21 PM

Jul 20 2023

jwb committed R11:290833541264: biology/canu: Fix build under clang 16 (authored by jwb).
biology/canu: Fix build under clang 16
Jul 20 2023, 11:22 AM

Jul 16 2023

jwb committed R11:7d4be2d6fd1e: biology/bifrost: Portability fixes (authored by jwb).
biology/bifrost: Portability fixes
Jul 16 2023, 1:42 PM
jwb committed R11:63e5ba4396f4: biology/bcf-score: Unbreak build with clang 16 (authored by jwb).
biology/bcf-score: Unbreak build with clang 16
Jul 16 2023, 1:20 PM
jwb committed R11:76d07b4e582d: biology/vcftools: Unbreak build with clang 16 (authored by jwb).
biology/vcftools: Unbreak build with clang 16
Jul 16 2023, 1:29 AM

Jul 15 2023

jwb committed R11:5cbb0205d56e: biology/clustalw: Unbreak build for clang 16 (authored by jwb).
biology/clustalw: Unbreak build for clang 16
Jul 15 2023, 11:19 PM

Jul 14 2023

jwb committed R11:2b96a02432ae: biology/kallisto: Tag only for 64-bit architectures (authored by jwb).
biology/kallisto: Tag only for 64-bit architectures
Jul 14 2023, 4:12 PM

Jul 11 2023

jwb committed R11:af7443143cee: Mk/bsd.local.mk: Remove accidental addition from previous commit (authored by jwb).
Mk/bsd.local.mk: Remove accidental addition from previous commit
Jul 11 2023, 4:35 PM
jwb committed R11:eb4b50d17fac: lumina*: Adopt from ports@ (authored by jwb).
lumina*: Adopt from ports@
Jul 11 2023, 4:29 PM
jwb committed R11:ffa0a812a476: biology/cdbfasta: Update to 2023.07.10 (authored by jwb).
biology/cdbfasta: Update to 2023.07.10
Jul 11 2023, 3:42 PM

Jul 10 2023

jwb committed R11:cc903ba09263: biology/cdbfasta: Update to 2018.10.05 (authored by jwb).
biology/cdbfasta: Update to 2018.10.05
Jul 10 2023, 3:31 PM

Jul 9 2023

jwb committed R11:3df899be4147: biology/haplohseq: Fix build on FreeBSD 14 (authored by jwb).
biology/haplohseq: Fix build on FreeBSD 14
Jul 9 2023, 4:38 PM

Jul 8 2023

jwb committed R11:168ecf03820a: biology/vsearch: Update to 2.23.0 (authored by jwb).
biology/vsearch: Update to 2.23.0
Jul 8 2023, 7:11 PM

Jul 7 2023

jwb committed R11:e0a1ec285ea6: sysutils/devd-mount: Update to 0.1.0.3 (authored by jwb).
sysutils/devd-mount: Update to 0.1.0.3
Jul 7 2023, 11:28 PM
jwb committed R11:cab50560d1b5: biology/kallisto: Update to 0.50.0 (authored by jwb).
biology/kallisto: Update to 0.50.0
Jul 7 2023, 6:00 PM
jwb committed R11:fd4a87696648: deskutils/qmediamanager: Update to 0.1.1 (authored by jwb).
deskutils/qmediamanager: Update to 0.1.1
Jul 7 2023, 4:22 PM
jwb committed R11:a9521b0d98dc: sysutils/auto-admin: Update to 0.7.18 (authored by jwb).
sysutils/auto-admin: Update to 0.7.18
Jul 7 2023, 4:22 PM
jwb committed R11:9ab320195bfa: sysutils/devd-mount: Create install conflict with sysutils/automount (authored by jwb).
sysutils/devd-mount: Create install conflict with sysutils/automount
Jul 7 2023, 3:50 PM
jwb committed R11:67d311c3b701: sysutils/devd-mount: Automount tool utilizing devd notifications (authored by jwb).
sysutils/devd-mount: Automount tool utilizing devd notifications
Jul 7 2023, 2:35 PM
jwb committed R11:964411795080: biology/bifrost: Parallel tool for de Bruijn graphs (authored by jwb).
biology/bifrost: Parallel tool for de Bruijn graphs
Jul 7 2023, 1:38 PM

Jun 27 2023

jwb committed R11:86d2df343114: math/py-matplotlib: Sync run depends with setup.py (authored by jwb).
math/py-matplotlib: Sync run depends with setup.py
Jun 27 2023, 1:27 PM

Jun 19 2023

jwb committed R11:e24fe4fd0e0b: biology/py-deeptools: Update to 3.5.2 (authored by jwb).
biology/py-deeptools: Update to 3.5.2
Jun 19 2023, 12:11 PM

Jun 17 2023

jwb committed R11:82b9b61e8018: devel/libxtend: Update to 0.1.8.2 (authored by jwb).
devel/libxtend: Update to 0.1.8.2
Jun 17 2023, 2:46 PM

Jun 14 2023

jwb committed R11:fddb1ea643a5: biology/chip-seq: Metaport for ChIP-Seq analysis (authored by jwb).
biology/chip-seq: Metaport for ChIP-Seq analysis
Jun 14 2023, 9:24 PM

Jun 10 2023

jwb committed R11:481ae0481b82: biology/biolibc: Update to 0.2.4.3 (authored by jwb).
biology/biolibc: Update to 0.2.4.3
Jun 10 2023, 12:16 PM
jwb committed R11:84da2471f504: sysutils/desktop-installer: Update to 0.8.0.6 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.0.6
Jun 10 2023, 12:13 PM
jwb committed R11:8311edc1814f: deskutils/qmediamanager: GUI tool for managing removable media (authored by jwb).
deskutils/qmediamanager: GUI tool for managing removable media
Jun 10 2023, 12:09 PM
jwb committed R11:31e744b50536: sysutils/npmount: Command line tool for non-privileged [un]mount (authored by jwb).
sysutils/npmount: Command line tool for non-privileged [un]mount
Jun 10 2023, 12:06 PM
jwb committed R11:14eec85db988: sysutils/auto-admin: Update to 0.7.16.1 (authored by jwb).
sysutils/auto-admin: Update to 0.7.16.1
Jun 10 2023, 12:03 PM
jwb committed R11:55b91b159bfd: biology/peak-classifier: Update to 0.1.4.8 (authored by jwb).
biology/peak-classifier: Update to 0.1.4.8
Jun 10 2023, 11:58 AM
jwb committed R11:9ad927648c87: biology/fasda: Update to 0.1.3 (authored by jwb).
biology/fasda: Update to 0.1.3
Jun 10 2023, 11:58 AM
jwb committed R11:e696f193a877: biology/biolibc-tools: Update to 0.1.4.6 (authored by jwb).
biology/biolibc-tools: Update to 0.1.4.6
Jun 10 2023, 11:58 AM
jwb committed R11:3befce435822: devel/libxtend: Update to 0.1.8 (authored by jwb).
devel/libxtend: Update to 0.1.8
Jun 10 2023, 11:58 AM

May 31 2023

jwb committed R11:8b9ae52ebb8c: biology/fastp: Update to 0.23.4 (authored by jwb).
biology/fastp: Update to 0.23.4
May 31 2023, 3:42 PM

May 29 2023

jwb committed R11:06ceea3d01df: biology/ncbi-blast+: Tag only for 64-bit architectures (authored by jwb).
biology/ncbi-blast+: Tag only for 64-bit architectures
May 29 2023, 2:00 PM

May 27 2023

jwb committed R11:5836db4f6725: biology/ncbi-blast+: Update to 2.14.0 (authored by jwb).
biology/ncbi-blast+: Update to 2.14.0
May 27 2023, 1:25 AM

May 25 2023

jwb committed R11:e5b670d10b81: archivers/vbz-compression: Update to 1.0.3 (authored by jwb).
archivers/vbz-compression: Update to 1.0.3
May 25 2023, 11:36 AM
jwb committed R11:d3973b039267: archivers/streamvbyte: Update to 1.0.0 (authored by jwb).
archivers/streamvbyte: Update to 1.0.0
May 25 2023, 11:36 AM

May 23 2023

jwb committed R11:de28a1d92f7b: biology/seqtk: Update to 1.4 (authored by jwb).
biology/seqtk: Update to 1.4
May 23 2023, 10:44 PM

May 22 2023

jwb committed R11:48a76d12d1b7: biology/py-macs2: Update to 2.2.8 (authored by jwb).
biology/py-macs2: Update to 2.2.8
May 22 2023, 5:14 PM

May 14 2023

jwb committed R11:4d258e203e82: biology/fastp: Update to 0.23.3 (authored by jwb).
biology/fastp: Update to 0.23.3
May 14 2023, 5:11 PM

May 12 2023

jwb committed R11:05c52e655e8a: biology/py-multiqc: Update to 1.14 (authored by jwb).
biology/py-multiqc: Update to 1.14
May 12 2023, 12:55 PM
jwb committed R11:472806ae8c27: devel/py-rich-click: Format click help output nicely with rich (authored by jwb).
devel/py-rich-click: Format click help output nicely with rich
May 12 2023, 12:55 PM

Apr 29 2023

jwb committed R11:57d280a35eb7: biology/minimap2: Update to 2.25 (authored by jwb).
biology/minimap2: Update to 2.25
Apr 29 2023, 2:53 PM
jwb committed R11:44171f2c6a24: biology/bedtools: Update to 2.31.0 (authored by jwb).
biology/bedtools: Update to 2.31.0
Apr 29 2023, 1:04 AM

Apr 16 2023

jwb committed R11:35c0952fb382: sysutils/desktop-installer: Update to 0.8.0.3 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.0.3
Apr 16 2023, 1:24 PM

Apr 1 2023

jwb committed R11:13d6c974c487: biology/py-pybigwig: Update to 0.3.21 (authored by jwb).
biology/py-pybigwig: Update to 0.3.21
Apr 1 2023, 9:10 PM

Mar 30 2023

jwb committed R11:b0a748bd0b3d: benchmarks/mst-bench: Update to 0.2.2 (authored by jwb).
benchmarks/mst-bench: Update to 0.2.2
Mar 30 2023, 11:49 AM

Mar 17 2023

jwb committed R11:276f662b76f8: biology/py-dna-features-viewer: Update to 3.1.2 (authored by jwb).
biology/py-dna-features-viewer: Update to 3.1.2
Mar 17 2023, 5:57 PM

Mar 16 2023

jwb committed R11:efaa7cc98f4d: biology/py-bcbio-gff: Update to 0.7.0 (authored by jwb).
biology/py-bcbio-gff: Update to 0.7.0
Mar 16 2023, 10:32 PM

Mar 11 2023

jwb added a comment to D38996: biology/ncbi-entrez-direct: fix build on riscv64.

Did someone do run testing on these updates before committing?

Mar 11 2023, 1:36 PM

Mar 9 2023

jwb added a comment to D38996: biology/ncbi-entrez-direct: fix build on riscv64.

Testing...

Mar 9 2023, 8:46 PM

Mar 8 2023

jwb committed R11:fbe7ee56d5a6: biology/py-pybigwig: Update to 0.3.20 (authored by jwb).
biology/py-pybigwig: Update to 0.3.20
Mar 8 2023, 1:51 PM

Mar 7 2023

jwb committed R11:d89248272808: biology/fastx-toolkit: Unbreak build on 14-CURRENT (authored by jwb).
biology/fastx-toolkit: Unbreak build on 14-CURRENT
Mar 7 2023, 5:29 PM

Mar 5 2023

jwb committed R11:a5b1448e8eb2: biology/fastqc: Update to 0.12.1 (authored by jwb).
biology/fastqc: Update to 0.12.1
Mar 5 2023, 12:18 AM

Mar 4 2023

jwb committed R11:330adfc763cf: sysutils/auto-admin: Update to 0.7.15-1 (authored by jwb).
sysutils/auto-admin: Update to 0.7.15-1
Mar 4 2023, 10:20 PM

Feb 25 2023

jwb committed R11:1cc8b4c62e76: sysutils/desktop-installer: Update to 0.8.0 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.0
Feb 25 2023, 4:17 PM
jwb committed R11:b0575dedd1cc: sysutils/auto-admin: Update to 0.7.15 (authored by jwb).
sysutils/auto-admin: Update to 0.7.15
Feb 25 2023, 4:14 PM
jwb committed R11:68c12d4ad402: biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics (authored by jwb).
biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics
Feb 25 2023, 2:28 PM

Feb 24 2023

jwb committed R11:1993bfc7cf7d: biology/samtools: Update to 1.17 (authored by jwb).
biology/samtools: Update to 1.17
Feb 24 2023, 11:32 PM
jwb committed R11:65b8ab93497d: biology/bcftools: Update to 1.17 (authored by jwb).
biology/bcftools: Update to 1.17
Feb 24 2023, 11:32 PM
jwb committed R11:5ce41514802c: biology/htslib: Update to 1.17 (authored by jwb).
biology/htslib: Update to 1.17
Feb 24 2023, 11:31 PM