Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee
User Details
User Details
- User Since
- Nov 27 2017, 4:37 PM (304 w, 3 d)
Mon, Sep 11
Mon, Sep 11
sysutils/runas: Run a command as another user
sysutils/desktop-installer: Update to 0.8.2.2
Sun, Sep 10
Sun, Sep 10
biology/pooler: Update to 1.88
Thu, Aug 31
Thu, Aug 31
jwb committed R11:d276cdd564ab: deskutils/freebsd-update-notify: Update to 0.1.1.2 (authored by jwb).
deskutils/freebsd-update-notify: Update to 0.1.1.2
sysutils/auto-admin: Update to 0.7.18.7
Aug 26 2023
Aug 26 2023
biology/ncbi-blast+: Update to 2.14.1
Aug 21 2023
Aug 21 2023
biology/star: Fix SIMD issue on non-amd64
Aug 17 2023
Aug 17 2023
biology/star: Update to 2.7.11a
Aug 12 2023
Aug 12 2023
jwb committed R11:f38473fec0a8: biology/bifrost: Control -march via CPUTYPE make variable (authored by jwb).
biology/bifrost: Control -march via CPUTYPE make variable
Aug 11 2023
Aug 11 2023
biology/peak-classifier: Update to 0.1.4.11
biology/fasda: Update to 0.1.4
biology/biolibc-tools: Update to 0.1.4.9
devel/libxtend: Update to 0.1.9
biology/biolibc: Update to 0.2.5
Aug 10 2023
Aug 10 2023
biology/sra-tools: Update to 3.0.6
Aug 9 2023
Aug 9 2023
sysutils/desktop-installer: Update to 0.8.2
deskutils/freebsd-update-notify: Update to 0.1.1
sysutils/auto-admin: Update to 0.7.18.3
Aug 7 2023
Aug 7 2023
sysutils/devd-mount: Update to 0.1.0.7
Aug 6 2023
Aug 6 2023
x11-themes/lumina-themes: Adopt port
jwb committed R11:fb487e6a5610: x11/lumina-core: Expand battery icon notification (authored by jwb).
x11/lumina-core: Expand battery icon notification
devel/yaggo: Update to 1.5.11
biology/py-macs2: Update to 2.2.9.1
devel/py-cykhash: CHEESESHOP -> PYPI
devel/Makefile: Add py-cykhash
jwb committed R11:21e0240b8fe6: devel/py-cykhash: Cython equivalent to khash-sets/maps (authored by jwb).
devel/py-cykhash: Cython equivalent to khash-sets/maps
Aug 5 2023
Aug 5 2023
p5-transdecoder: Update to 5.7.1
biology/py-htseq: Update to 2.0.4
biology/py-multiqc: Update to 1.15
Jul 31 2023
Jul 31 2023
jwb committed R11:abf65f917805: deskutils/freebsd-update-notify: Desktop notification for av. updates (authored by jwb).
deskutils/freebsd-update-notify: Desktop notification for av. updates
jwb committed R11:3a654ece10c9: biology/rna-seq: Add biology/star dep to metaport (authored by jwb).
biology/rna-seq: Add biology/star dep to metaport
Jul 28 2023
Jul 28 2023
jwb committed R11:505bb0df2b00: biology/py-htseq: Python library for sequence analysis (authored by jwb).
biology/py-htseq: Python library for sequence analysis
biology/atac-seq: Add curl to metaport deps
biology/rna-seq: Add curl to metaport deps
Jul 24 2023
Jul 24 2023
biology/kallisto: Clean up build
jwb committed R11:24377618fdcc: biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processors (authored by jwb).
biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processors
jwb committed R11:546ae89fe34b: biology/star: Set NOT_FOR_ARCHS to all 32-bit processors (authored by jwb).
biology/star: Set NOT_FOR_ARCHS to all 32-bit processors
Jul 21 2023
Jul 21 2023
jwb committed R11:64a6421c248a: biology/salmon: Transcript-level quantification of RNA-seq (authored by jwb).
biology/salmon: Transcript-level quantification of RNA-seq
biology/star: Update to 2.7.10b
Jul 20 2023
Jul 20 2023
biology/canu: Fix build under clang 16
Jul 16 2023
Jul 16 2023
biology/bifrost: Portability fixes
biology/bcf-score: Unbreak build with clang 16
biology/vcftools: Unbreak build with clang 16
Jul 15 2023
Jul 15 2023
biology/clustalw: Unbreak build for clang 16
Jul 14 2023
Jul 14 2023
jwb committed R11:2b96a02432ae: biology/kallisto: Tag only for 64-bit architectures (authored by jwb).
biology/kallisto: Tag only for 64-bit architectures
Jul 11 2023
Jul 11 2023
jwb committed R11:af7443143cee: Mk/bsd.local.mk: Remove accidental addition from previous commit (authored by jwb).
Mk/bsd.local.mk: Remove accidental addition from previous commit
lumina*: Adopt from ports@
biology/cdbfasta: Update to 2023.07.10
Jul 10 2023
Jul 10 2023
biology/cdbfasta: Update to 2018.10.05
Jul 9 2023
Jul 9 2023
biology/haplohseq: Fix build on FreeBSD 14
Jul 8 2023
Jul 8 2023
biology/vsearch: Update to 2.23.0
Jul 7 2023
Jul 7 2023
sysutils/devd-mount: Update to 0.1.0.3
biology/kallisto: Update to 0.50.0
deskutils/qmediamanager: Update to 0.1.1
sysutils/auto-admin: Update to 0.7.18
jwb committed R11:9ab320195bfa: sysutils/devd-mount: Create install conflict with sysutils/automount (authored by jwb).
sysutils/devd-mount: Create install conflict with sysutils/automount
jwb committed R11:67d311c3b701: sysutils/devd-mount: Automount tool utilizing devd notifications (authored by jwb).
sysutils/devd-mount: Automount tool utilizing devd notifications
jwb committed R11:964411795080: biology/bifrost: Parallel tool for de Bruijn graphs (authored by jwb).
biology/bifrost: Parallel tool for de Bruijn graphs
Jun 27 2023
Jun 27 2023
jwb committed R11:86d2df343114: math/py-matplotlib: Sync run depends with setup.py (authored by jwb).
math/py-matplotlib: Sync run depends with setup.py
Jun 19 2023
Jun 19 2023
biology/py-deeptools: Update to 3.5.2
Jun 17 2023
Jun 17 2023
devel/libxtend: Update to 0.1.8.2
Jun 14 2023
Jun 14 2023
biology/chip-seq: Metaport for ChIP-Seq analysis
Jun 10 2023
Jun 10 2023
biology/biolibc: Update to 0.2.4.3
sysutils/desktop-installer: Update to 0.8.0.6
jwb committed R11:8311edc1814f: deskutils/qmediamanager: GUI tool for managing removable media (authored by jwb).
deskutils/qmediamanager: GUI tool for managing removable media
jwb committed R11:31e744b50536: sysutils/npmount: Command line tool for non-privileged [un]mount (authored by jwb).
sysutils/npmount: Command line tool for non-privileged [un]mount
sysutils/auto-admin: Update to 0.7.16.1
biology/peak-classifier: Update to 0.1.4.8
biology/fasda: Update to 0.1.3
biology/biolibc-tools: Update to 0.1.4.6
devel/libxtend: Update to 0.1.8
May 31 2023
May 31 2023
biology/fastp: Update to 0.23.4
May 29 2023
May 29 2023
jwb committed R11:06ceea3d01df: biology/ncbi-blast+: Tag only for 64-bit architectures (authored by jwb).
biology/ncbi-blast+: Tag only for 64-bit architectures
May 27 2023
May 27 2023
biology/ncbi-blast+: Update to 2.14.0
May 25 2023
May 25 2023
archivers/vbz-compression: Update to 1.0.3
archivers/streamvbyte: Update to 1.0.0
May 23 2023
May 23 2023
biology/seqtk: Update to 1.4
May 22 2023
May 22 2023
biology/py-macs2: Update to 2.2.8
May 14 2023
May 14 2023
biology/fastp: Update to 0.23.3
May 12 2023
May 12 2023
biology/py-multiqc: Update to 1.14
jwb committed R11:472806ae8c27: devel/py-rich-click: Format click help output nicely with rich (authored by jwb).
devel/py-rich-click: Format click help output nicely with rich
Apr 29 2023
Apr 29 2023
biology/minimap2: Update to 2.25
biology/bedtools: Update to 2.31.0
Apr 16 2023
Apr 16 2023
sysutils/desktop-installer: Update to 0.8.0.3
Apr 1 2023
Apr 1 2023
biology/py-pybigwig: Update to 0.3.21
Mar 30 2023
Mar 30 2023
benchmarks/mst-bench: Update to 0.2.2
Mar 17 2023
Mar 17 2023
biology/py-dna-features-viewer: Update to 3.1.2
Mar 16 2023
Mar 16 2023
biology/py-bcbio-gff: Update to 0.7.0
Mar 11 2023
Mar 11 2023
jwb added a comment to D38996: biology/ncbi-entrez-direct: fix build on riscv64.
Did someone do run testing on these updates before committing?
Mar 9 2023
Mar 9 2023
jwb added a comment to D38996: biology/ncbi-entrez-direct: fix build on riscv64.
Testing...
Mar 8 2023
Mar 8 2023
biology/py-pybigwig: Update to 0.3.20
Mar 7 2023
Mar 7 2023
jwb committed R11:d89248272808: biology/fastx-toolkit: Unbreak build on 14-CURRENT (authored by jwb).
biology/fastx-toolkit: Unbreak build on 14-CURRENT
Mar 5 2023
Mar 5 2023
biology/fastqc: Update to 0.12.1
Mar 4 2023
Mar 4 2023
sysutils/auto-admin: Update to 0.7.15-1
Feb 25 2023
Feb 25 2023
sysutils/desktop-installer: Update to 0.8.0
sysutils/auto-admin: Update to 0.7.15
jwb committed R11:68c12d4ad402: biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics (authored by jwb).
biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics
Feb 24 2023
Feb 24 2023
biology/samtools: Update to 1.17
biology/bcftools: Update to 1.17
biology/htslib: Update to 1.17