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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (261 w, 4 d)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity

Thu, Nov 24

jwb committed R11:4b987075629f: biology/megahit: Add cmake patch to respect ports build flags (authored by jwb).
biology/megahit: Add cmake patch to respect ports build flags
Thu, Nov 24, 2:12 PM

Wed, Nov 23

jwb committed R11:35dc7ffe64b4: games/solver: Math training game using C and SDL2 (authored by jwb).
games/solver: Math training game using C and SDL2
Wed, Nov 23, 1:49 PM

Tue, Nov 22

jwb committed R11:acb3a0de6468: biology/megahit: Ultra-fast single-node metagenomics assembly (authored by jwb).
biology/megahit: Ultra-fast single-node metagenomics assembly
Tue, Nov 22, 4:39 PM

Wed, Nov 16

jwb committed R11:9d387d6d8e68: science/vmd: Update to 1.9.4a57 (authored by jwb).
science/vmd: Update to 1.9.4a57
Wed, Nov 16, 12:36 AM

Fri, Nov 4

jwb committed R11:f2f8bd75c4ac: biology/bowtie2: Update to 2.5.0 (authored by jwb).
biology/bowtie2: Update to 2.5.0
Fri, Nov 4, 11:49 PM

Oct 16 2022

jwb committed R11:c3d5e5fb0e35: sysutils/parafly: Fix build on armv7 (authored by jwb).
sysutils/parafly: Fix build on armv7
Oct 16 2022, 1:33 PM

Oct 11 2022

jwb committed R11:b532c5dd966e: biology/hmmer: Update to 3.3.2 (authored by jwb).
biology/hmmer: Update to 3.3.2
Oct 11 2022, 8:13 PM

Oct 7 2022

jwb committed R11:10b449775837: sysutils/parafly: Fix build on armv7 (authored by jwb).
sysutils/parafly: Fix build on armv7
Oct 7 2022, 1:29 PM

Sep 29 2022

jwb committed R11:3a8a4ba203cb: sysutils/auto-admin: Update to 0.7.13.2 (authored by jwb).
sysutils/auto-admin: Update to 0.7.13.2
Sep 29 2022, 4:51 PM

Sep 21 2022

jwb committed R11:001947d3e51c: biology/vsearch: Update to 2.22.1 (authored by jwb).
biology/vsearch: Update to 2.22.1
Sep 21 2022, 4:24 PM

Sep 19 2022

jwb committed R11:1966544a8056: sysutils/auto-admin: Update to 0.7.13 (authored by jwb).
sysutils/auto-admin: Update to 0.7.13
Sep 19 2022, 1:06 PM

Sep 16 2022

jwb committed R11:de24c3efe81a: biology/vsearch: Update to 2.21.2 (authored by jwb).
biology/vsearch: Update to 2.21.2
Sep 16 2022, 4:20 PM

Sep 11 2022

jwb committed R11:bff790833d63: sysutils/desktop-installer: Update to 0.7.8-3 (authored by jwb).
sysutils/desktop-installer: Update to 0.7.8-3
Sep 11 2022, 6:28 PM
jwb committed R11:5a9a32c163d7: sysutils/auto-admin: Update to 0.7.12.13 (authored by jwb).
sysutils/auto-admin: Update to 0.7.12.13
Sep 11 2022, 6:23 PM

Aug 28 2022

jwb committed R11:f28b7352ef80: archivers/streamvbyte: Update to 0.5.1 (authored by jwb).
archivers/streamvbyte: Update to 0.5.1
Aug 28 2022, 7:57 PM

Aug 17 2022

jwb committed R11:88833e7cce1a: sysutils/desktop-installer: Drop bsdstats install option (authored by jwb).
sysutils/desktop-installer: Drop bsdstats install option
Aug 17 2022, 5:21 PM

Aug 10 2022

jwb committed R11:cd202ed1a278: sysutils/auto-admin: Update to 0.7.12.4 (authored by jwb).
sysutils/auto-admin: Update to 0.7.12.4
Aug 10 2022, 7:29 PM

Aug 4 2022

jwb committed R11:cff9e0032238: sysutils/spcm: Update to 0.5.7.6 (authored by jwb).
sysutils/spcm: Update to 0.5.7.6
Aug 4 2022, 1:00 PM
jwb committed R11:de866ca9d373: sysutils/desktop-installer: Update to 0.7.8 (authored by jwb).
sysutils/desktop-installer: Update to 0.7.8
Aug 4 2022, 1:00 PM
jwb committed R11:b27d623d7232: auto-admin: Update to 0.7.12 (authored by jwb).
auto-admin: Update to 0.7.12
Aug 4 2022, 1:00 PM

Jul 12 2022

jwb committed R11:bcc206f2be0c: biology/pooler: Update to 1.85 (authored by jwb).
biology/pooler: Update to 1.85
Jul 12 2022, 12:47 PM

Jul 10 2022

jwb committed R11:fad26871bd54: x11/coreterminal: Update to latest commit (authored by jwb).
x11/coreterminal: Update to latest commit
Jul 10 2022, 1:25 PM
jwb committed R11:afabc1026c31: deskutils/coregarage: Update to latest commit (authored by jwb).
deskutils/coregarage: Update to latest commit
Jul 10 2022, 1:25 PM
jwb committed R11:0879877de4a6: deskutils/libcprime: Update to latest commit (authored by jwb).
deskutils/libcprime: Update to latest commit
Jul 10 2022, 1:25 PM

Jun 12 2022

jwb committed R11:8051f5e8e8f0: math/basic-stats: Update to 0.1.2 (authored by jwb).
math/basic-stats: Update to 0.1.2
Jun 12 2022, 2:55 PM

Jun 11 2022

jwb committed R11:7d736c93c291: math/basic-stats: Command-line tool for statistics on tabular data (authored by jwb).
math/basic-stats: Command-line tool for statistics on tabular data
Jun 11 2022, 2:31 PM
jwb committed R11:a32ba8bb15a2: biology/vcf2hap: Update to 0.1.6 (authored by jwb).
biology/vcf2hap: Update to 0.1.6
Jun 11 2022, 2:27 PM
jwb committed R11:620c716685c4: biology/peak-classifier: Update to 0.1.4 (authored by jwb).
biology/peak-classifier: Update to 0.1.4
Jun 11 2022, 2:27 PM
jwb committed R11:5e31c875e135: biology/ad2vcf: Update to 0.1.6 (authored by jwb).
biology/ad2vcf: Update to 0.1.6
Jun 11 2022, 2:27 PM
jwb committed R11:ef8583e1d5f3: biology/vcf-split: Update to 0.1.5 (authored by jwb).
biology/vcf-split: Update to 0.1.5
Jun 11 2022, 2:27 PM
jwb committed R11:f869d6b41205: biology/biolibc-tools: Update to 0.1.3 (authored by jwb).
biology/biolibc-tools: Update to 0.1.3
Jun 11 2022, 2:27 PM
jwb committed R11:603571cd3226: biology/biolibc: Update to 0.2.3 (authored by jwb).
biology/biolibc: Update to 0.2.3
Jun 11 2022, 2:27 PM
jwb committed R11:c26e64f5c9cc: devel/libxtend: Update to 0.1.6 (authored by jwb).
devel/libxtend: Update to 0.1.6
Jun 11 2022, 2:27 PM

Jun 10 2022

jwb committed R11:f3b9375eb209: security/globalprotect-openconnect: Update to 1.4.7 (authored by jwb).
security/globalprotect-openconnect: Update to 1.4.7
Jun 10 2022, 10:46 PM

Jun 8 2022

jwb committed R11:0fe015c69f4d: sysutils/spcm: Update to 0.5.7 (authored by jwb).
sysutils/spcm: Update to 0.5.7
Jun 8 2022, 12:44 AM
jwb committed R11:24597a7d91f1: sysutils/desktop-installer: Update to 0.7.7.4 (authored by jwb).
sysutils/desktop-installer: Update to 0.7.7.4
Jun 8 2022, 12:33 AM
jwb committed R11:a8fe7a17d8c3: sysutils/auto-admin: Update to 0.7.11 (authored by jwb).
sysutils/auto-admin: Update to 0.7.11
Jun 8 2022, 12:33 AM

Jun 7 2022

jwb committed R11:c35d6bc602dd: x11/coreterminal: Update to latest commit (authored by jwb).
x11/coreterminal: Update to latest commit
Jun 7 2022, 3:59 PM
jwb committed R11:23941c954fd7: deskutils/coregarage: Update to latest commit (authored by jwb).
deskutils/coregarage: Update to latest commit
Jun 7 2022, 3:59 PM
jwb committed R11:03e3e727378e: deskutils/libcprime: Update to 4.3.0 (authored by jwb).
deskutils/libcprime: Update to 4.3.0
Jun 7 2022, 3:59 PM

Jun 3 2022

jwb committed R11:06b803fa9843: security/globalprotect-openconnect: Update to 1.4.6 (authored by jwb).
security/globalprotect-openconnect: Update to 1.4.6
Jun 3 2022, 2:12 PM

May 30 2022

jwb committed R11:14d57822ed4c: security/globalprotect/openconnect: Update to 1.4.5 (authored by jwb).
security/globalprotect/openconnect: Update to 1.4.5
May 30 2022, 3:33 PM
jwb accepted D35346: Introduce versioned Go ports.

biology/ncbi-entrez-direct looks fine.

May 30 2022, 12:51 PM
jwb updated jwb.
May 30 2022, 12:35 PM

May 26 2022

jwb committed R11:a98b1edcc998: security/globalprotect-openconnect: Update to 1.4.4 (authored by jwb).
security/globalprotect-openconnect: Update to 1.4.4
May 26 2022, 12:56 PM

May 22 2022

jwb committed R11:844f16b96455: math/intervaltree: Deprecate (authored by jwb).
math/intervaltree: Deprecate
May 22 2022, 6:00 PM
jwb added a comment to D35280: cleanup: remove expired versions of OpenJDK (12 through 16).

The SnpEff site clearly states a Java 12 requirement: http://pcingola.github.io/SnpEff/

May 22 2022, 12:57 PM

May 8 2022

jwb committed R11:dda5e525082d: biology/py-dna-features-viewer: Update to 3.1.1 (authored by jwb).
biology/py-dna-features-viewer: Update to 3.1.1
May 8 2022, 12:51 PM

Apr 29 2022

jwb committed R11:4452c178c27a: archivers/vbz-compression: Update to 1.0.2 (authored by jwb).
archivers/vbz-compression: Update to 1.0.2
Apr 29 2022, 12:42 PM

Mar 25 2022

jwb committed R11:fad5d1754c6c: biology/py-ont-fast5-api: Update to 4.0.2 (authored by jwb).
biology/py-ont-fast5-api: Update to 4.0.2
Mar 25 2022, 4:40 PM

Mar 21 2022

jwb committed R11:19264c9fb146: biology/fastq-trim: Update to 0.1.1.4 (authored by jwb).
biology/fastq-trim: Update to 0.1.1.4
Mar 21 2022, 9:20 PM
jwb committed R11:950fb7be37a0: biology/fastq-trim: Update to 0.1.1.2 (authored by jwb).
biology/fastq-trim: Update to 0.1.1.2
Mar 21 2022, 8:40 PM

Mar 20 2022

jwb committed R11:0297052e221a: biology/bolt-lmm: Update to 2.3.6 (authored by jwb).
biology/bolt-lmm: Update to 2.3.6
Mar 20 2022, 3:29 PM

Mar 19 2022

jwb committed R11:a47115b9cad4: biology/fastq-trim: Lightening fast sequence read trimmer (authored by jwb).
biology/fastq-trim: Lightening fast sequence read trimmer
Mar 19 2022, 12:26 PM

Mar 15 2022

jwb committed R11:52adc1acee68: biology/vcf2hap: Update to 0.1.5 (authored by jwb).
biology/vcf2hap: Update to 0.1.5
Mar 15 2022, 9:45 PM
jwb committed R11:58a9101d2b9c: biology/vcf-split: Update to 0.1.4 (authored by jwb).
biology/vcf-split: Update to 0.1.4
Mar 15 2022, 9:45 PM
jwb committed R11:aa7ea85d2bf2: biology/peak-classifier: Update to 0.1.3 (authored by jwb).
biology/peak-classifier: Update to 0.1.3
Mar 15 2022, 9:45 PM
jwb committed R11:eab790a0c7c3: biology/ad2vcf: Update to 0.1.5 (authored by jwb).
biology/ad2vcf: Update to 0.1.5
Mar 15 2022, 9:45 PM
jwb committed R11:b8604e856abf: biology/biolibc-tools: Update to 0.1.2 (authored by jwb).
biology/biolibc-tools: Update to 0.1.2
Mar 15 2022, 9:45 PM
jwb committed R11:258dc9d15d7c: biology/biolibc: Update to 0.2.2 (authored by jwb).
biology/biolibc: Update to 0.2.2
Mar 15 2022, 9:45 PM
jwb committed R11:1f51bfb76061: devel/libxtend: Update to 0.1.5 (authored by jwb).
devel/libxtend: Update to 0.1.5
Mar 15 2022, 9:45 PM

Mar 14 2022

jwb committed R11:3b861fa65fe8: biology/pooler: Update to 1.84 (authored by jwb).
biology/pooler: Update to 1.84
Mar 14 2022, 2:45 PM

Mar 13 2022

jwb committed R11:2ec5df7d39db: sysutils/desktop-installer: Update to 0.7.7 (authored by jwb).
sysutils/desktop-installer: Update to 0.7.7
Mar 13 2022, 3:34 PM
jwb committed R11:7718909b5d76: sysutils/autoadmin: Update to 0.7.10 (authored by jwb).
sysutils/autoadmin: Update to 0.7.10
Mar 13 2022, 3:24 PM

Mar 7 2022

jwb committed R11:e48763c72d43: security/globalprotect-openconnect: Update to 1.4.1 (authored by jwb).
security/globalprotect-openconnect: Update to 1.4.1
Mar 7 2022, 1:57 PM

Mar 4 2022

jwb committed R11:f096655c794b: x11/lumina-core: Fix LScreensaver password check (authored by jwb).
x11/lumina-core: Fix LScreensaver password check
Mar 4 2022, 1:03 AM

Mar 1 2022

jwb committed R11:41b6a246b075: security/globalprotect-openconnect: OpenConnect GUI for GlobalProtect (authored by jwb).
security/globalprotect-openconnect: OpenConnect GUI for GlobalProtect
Mar 1 2022, 9:18 PM

Feb 26 2022

jwb committed R11:f46ddab3d69f: biology/bio-mocha: Update bcftools submodule to 1.15 (authored by jwb).
biology/bio-mocha: Update bcftools submodule to 1.15
Feb 26 2022, 3:04 PM
jwb committed R11:734d2c4df0a5: biology/bcftools: Update to 1.15 (authored by jwb).
biology/bcftools: Update to 1.15
Feb 26 2022, 3:04 PM
jwb committed R11:822ec7476b36: biology/samtools: Update to 1.15 (authored by jwb).
biology/samtools: Update to 1.15
Feb 26 2022, 3:04 PM
jwb committed R11:b3b13f54dcec: biology/htslib: Update to 1.15 (authored by jwb).
biology/htslib: Update to 1.15
Feb 26 2022, 3:04 PM

Feb 23 2022

jwb committed R11:f7972afbeec5: x11/lumina-core: Replace apm battery monitoring with sysctls() (authored by jwb).
x11/lumina-core: Replace apm battery monitoring with sysctls()
Feb 23 2022, 2:46 PM

Feb 22 2022

jwb committed R11:9f318b638b3b: x11/lumina-core: Add fluxbox-tenr-styles-pack to RUN_DEPENDS (authored by jwb).
x11/lumina-core: Add fluxbox-tenr-styles-pack to RUN_DEPENDS
Feb 22 2022, 1:56 PM

Feb 15 2022

jwb committed R11:542425b796e6: sysutils/desktop-installer: Update to 0.7.6.6 (authored by jwb).
sysutils/desktop-installer: Update to 0.7.6.6
Feb 15 2022, 11:11 PM

Feb 12 2022

jwb committed R11:72923f58ba52: biology/py-dna-features-viewer: Add missing dependency (authored by jwb).
biology/py-dna-features-viewer: Add missing dependency
Feb 12 2022, 3:13 PM
jwb committed R11:d1277d3af207: sysutils/auto-admin: Update to 0.7.9.12 (authored by jwb).
sysutils/auto-admin: Update to 0.7.9.12
Feb 12 2022, 2:56 PM

Feb 11 2022

jwb committed R11:21daf02816df: sysutils/linux-miniconda-installer: Bump python dep to 3.9 (authored by jwb).
sysutils/linux-miniconda-installer: Bump python dep to 3.9
Feb 11 2022, 3:55 PM

Feb 9 2022

jwb committed R11:c6c68478db53: benchmarks/mst-bench: Update to 0.2.1-18 (authored by jwb).
benchmarks/mst-bench: Update to 0.2.1-18
Feb 9 2022, 3:25 PM

Feb 6 2022

jwb committed R11:09167ae22b66: biology/freebayes: Update to 1.3.6 (authored by jwb).
biology/freebayes: Update to 1.3.6
Feb 6 2022, 8:26 PM

Feb 3 2022

jwb committed R11:0939abbdf631: biology/py-dna-features-viewer: Add py-bcbio-gff dep (authored by jwb).
biology/py-dna-features-viewer: Add py-bcbio-gff dep
Feb 3 2022, 8:12 PM
jwb committed R11:d936c94c64a8: biology/py-bcbio-gff: Read and write Generic Feature Format (GFF) (authored by jwb).
biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)
Feb 3 2022, 7:38 PM
jwb committed R11:2b1ef5b34e0e: biology/py-dna-features-viewer: Python lib to visualize DNA features (authored by jwb).
biology/py-dna-features-viewer: Python lib to visualize DNA features
Feb 3 2022, 12:39 PM

Feb 2 2022

jwb committed R11:c2007f9e0ed9: auto-admin: Unbreak auto-install-base-components (authored by jwb).
auto-admin: Unbreak auto-install-base-components
Feb 2 2022, 4:23 PM

Jan 29 2022

jwb committed R11:f7a0202aae66: sysutils/spcm: Update to 0.5.6 (authored by jwb).
sysutils/spcm: Update to 0.5.6
Jan 29 2022, 11:38 PM
jwb committed R11:b9bff6513119: sysutils/ganglia-webfrontend: Flavorize to prevent build with PHP 8 (authored by jwb).
sysutils/ganglia-webfrontend: Flavorize to prevent build with PHP 8
Jan 29 2022, 11:01 PM
jwb committed R11:b829b65dc512: multimedia/kodi: Unbreak package, failing due to missing libdvdcss (authored by jwb).
multimedia/kodi: Unbreak package, failing due to missing libdvdcss
Jan 29 2022, 4:58 PM
jwb committed R11:94753e8d69e3: multimedia/kodi: Unbreak package, failing due to missing libdvdcss (authored by jwb).
multimedia/kodi: Unbreak package, failing due to missing libdvdcss
Jan 29 2022, 4:45 PM

Jan 28 2022

jwb committed R11:8859320e5667: biology/vcflib: Update to 1.0.3 (authored by jwb).
biology/vcflib: Update to 1.0.3
Jan 28 2022, 12:13 AM

Jan 23 2022

jwb committed R11:f67392e69b9c: biology/vsearch: Update to 2.21.1 (authored by jwb).
biology/vsearch: Update to 2.21.1
Jan 23 2022, 10:32 PM

Jan 21 2022

jwb committed R11:d7bf0bf32d60: sysutils/desktop-installer: Update to 0.7.6.2 (authored by jwb).
sysutils/desktop-installer: Update to 0.7.6.2
Jan 21 2022, 8:49 PM
jwb committed R11:6f88d32b29fc: sysutils/auto-admin: Update to 0.7.9 (authored by jwb).
sysutils/auto-admin: Update to 0.7.9
Jan 21 2022, 8:49 PM
jwb committed R11:265238ee6c37: biology/fastp: Add USE_GCC to hack around seg faults (authored by jwb).
biology/fastp: Add USE_GCC to hack around seg faults
Jan 21 2022, 4:16 PM
jwb committed R11:bfdda4387466: biology/bowtie2: Update to 2.4.5 (authored by jwb).
biology/bowtie2: Update to 2.4.5
Jan 21 2022, 2:35 PM

Jan 19 2022

jwb committed R11:c9bd01bdf4c1: biology/kallisto: Update to 0.48.0 (authored by jwb).
biology/kallisto: Update to 0.48.0
Jan 19 2022, 2:00 PM

Jan 13 2022

jwb committed R11:e33f72037a79: biology/bio-mocha: Update to 1.14-20220112 (authored by jwb).
biology/bio-mocha: Update to 1.14-20220112
Jan 13 2022, 7:00 PM

Jan 9 2022

jwb added a comment to D33733: Add a "bgnow" NFS mount option that causes the mount to go background immediately.

Only thing I would change is use a consistent format for the bit masks: E.g. 0x04, 0x08, 0x10.

Jan 9 2022, 5:01 PM

Jan 8 2022

jwb committed R11:231919fc1935: biology/vsearch: Update to 2.19.0 (authored by jwb).
biology/vsearch: Update to 2.19.0
Jan 8 2022, 12:05 AM

Dec 31 2021

jwb committed R11:2b4cfc8ff39b: biology/minimap2: Update to 2.24 (authored by jwb).
biology/minimap2: Update to 2.24
Dec 31 2021, 2:33 PM

Dec 30 2021

jwb committed R11:082c7a0de238: biology/fastp: Update to 0.23.2 (authored by jwb).
biology/fastp: Update to 0.23.2
Dec 30 2021, 4:32 PM

Dec 22 2021

jwb committed R11:357529fea6c0: sysutils/slurm-wlm: Release to ports@ (authored by jwb).
sysutils/slurm-wlm: Release to ports@
Dec 22 2021, 3:07 PM