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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (450 w, 3 h)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity
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Sat, Jul 11

jwb committed R11:b44b3ccb00d6: biology/htslib: Update to 1.24 (authored by jwb).
biology/htslib: Update to 1.24
Sat, Jul 11, 7:34 PM
jwb committed R11:1ef610474aab: biology/samtools: Update to 1.24 (authored by jwb).
biology/samtools: Update to 1.24
Sat, Jul 11, 7:33 PM
jwb committed R11:c688db2d7658: biology/bcftools: Update to 1.24 (authored by jwb).
biology/bcftools: Update to 1.24
Sat, Jul 11, 7:33 PM

Sat, Jul 4

jwb committed R11:4503d4fcebc4: biology/chip-seq: Update to 0.3.1 (authored by jwb).
biology/chip-seq: Update to 0.3.1
Sat, Jul 4, 12:43 AM
jwb committed R11:117cd80d6d50: biology/atac-seq: Update to 0.3.1 (authored by jwb).
biology/atac-seq: Update to 0.3.1
Sat, Jul 4, 12:42 AM
jwb committed R11:1f8de6517b90: biology/py-goatools: Fix build with python 3.12 (authored by jwb).
biology/py-goatools: Fix build with python 3.12
Sat, Jul 4, 12:37 AM

Tue, Jun 30

jwb committed R11:3c4e84e29e47: science/orthanc-postgresql: Update to 10.2 (authored by jwb).
science/orthanc-postgresql: Update to 10.2
Tue, Jun 30, 12:16 PM

Sun, Jun 21

jwb committed R11:66f2bf448dd3: science/csvtk: Update to 0.37.0 (authored by jwb).
science/csvtk: Update to 0.37.0
Sun, Jun 21, 12:39 PM

Jun 2 2026

jwb committed R11:3f253a0d77dd: sysutils/desktop-installer: Update to 1.2.0.1 (authored by jwb).
sysutils/desktop-installer: Update to 1.2.0.1
Jun 2 2026, 12:37 AM

Jun 1 2026

jwb committed R11:153493637da7: sysutils/desktop-installer: Update to 1.2.0 (authored by jwb).
sysutils/desktop-installer: Update to 1.2.0
Jun 1 2026, 11:34 AM
jwb committed R11:b59855e4a25d: sysutils/auto-admin: Update to 0.8.5 (authored by jwb).
sysutils/auto-admin: Update to 0.8.5
Jun 1 2026, 11:32 AM

May 29 2026

jwb committed R11:b1346a408014: biology/sra-tools: lib64 -> lib (authored by jwb).
biology/sra-tools: lib64 -> lib
May 29 2026, 9:54 PM

May 20 2026

jwb committed R11:fb032e31573e: biology/minimap2: Update to 2.31 (authored by jwb).
biology/minimap2: Update to 2.31
May 20 2026, 12:17 PM

May 13 2026

jwb committed R11:7bb1b42592d5: biology/sra-tools: Patch out extraneous scripts (authored by jwb).
biology/sra-tools: Patch out extraneous scripts
May 13 2026, 12:00 AM

May 10 2026

jwb committed R11:633db178d7cb: archivers/streamvbyte: Add patch to repo (authored by jwb).
archivers/streamvbyte: Add patch to repo
May 10 2026, 11:47 AM

May 9 2026

jwb committed R11:a33cabba24be: archivers/streamvbyte: Update to 3.0.0 (authored by jwb).
archivers/streamvbyte: Update to 3.0.0
May 9 2026, 9:36 PM

May 3 2026

jwb committed R11:c866de255242: biology/vsearch: Update to 2.31.0 (authored by jwb).
biology/vsearch: Update to 2.31.0
May 3 2026, 4:25 PM

Apr 27 2026

jwb committed R11:6a27a4d51a75: biology/py-deeptools: Update to 3.5.6 (authored by jwb).
biology/py-deeptools: Update to 3.5.6
Apr 27 2026, 3:39 PM
jwb committed R11:793012e57cb4: biology/py-py2bit: Update to 1.0.1 (authored by jwb).
biology/py-py2bit: Update to 1.0.1
Apr 27 2026, 11:33 AM

Apr 25 2026

jwb committed R11:13a2adc4e943: devel/R-cran-optparse: Update to 1.8.2 (authored by jwb).
devel/R-cran-optparse: Update to 1.8.2
Apr 25 2026, 6:09 PM

Apr 23 2026

jwb committed R11:f50ffed429f0: science/orthanc-postgresql: Update to 10.1 (authored by jwb).
science/orthanc-postgresql: Update to 10.1
Apr 23 2026, 1:09 PM
jwb committed R11:4a6c7c329579: science/orthanc-dicomweb: Update to 1.23 (authored by jwb).
science/orthanc-dicomweb: Update to 1.23
Apr 23 2026, 1:09 PM
jwb committed R11:4ec8a8710655: science/orthanc-mysql: Update to allow build alongside orthanc 1.12.11 (authored by jwb).
science/orthanc-mysql: Update to allow build alongside orthanc 1.12.11
Apr 23 2026, 1:08 PM
jwb committed R11:48e5e15f79ad: science/orthanc: Update to 1.12.11 (authored by jwb).
science/orthanc: Update to 1.12.11
Apr 23 2026, 1:08 PM

Apr 15 2026

jwb committed R11:b72964999543: x11/lumina-core: Patch to reduce screensaver glare (authored by jwb).
x11/lumina-core: Patch to reduce screensaver glare
Apr 15 2026, 12:27 PM

Apr 13 2026

jwb committed R11:945218c4828c: biology/gffread: Update to 0.12.9 (authored by jwb).
biology/gffread: Update to 0.12.9
Apr 13 2026, 1:22 PM

Mar 29 2026

jwb committed R11:0d69b76f0fd1: biology/samtools: Update to 1.23.1 (authored by jwb).
biology/samtools: Update to 1.23.1
Mar 29 2026, 1:25 PM
jwb committed R11:e2110f368446: biology/bcftools: Update to 1.23.1 (authored by jwb).
biology/bcftools: Update to 1.23.1
Mar 29 2026, 1:25 PM
jwb committed R11:726185a559aa: biology/htslib: Update to 1.23.1 (authored by jwb).
biology/htslib: Update to 1.23.1
Mar 29 2026, 1:25 PM

Mar 28 2026

jwb committed R11:32b965a00ecb: science/orthanc: Use unversioned dcmtk DATADIR (authored by jwb).
science/orthanc: Use unversioned dcmtk DATADIR
Mar 28 2026, 10:36 PM
jwb committed R11:08eb51d89e26: biology/vsearch: Update to 2.30.6 (authored by jwb).
biology/vsearch: Update to 2.30.6
Mar 28 2026, 12:13 PM
jwb committed R11:6df3d90f95a7: graphics/dcmtk: Add unversioned link to DATADIR (authored by jwb).
graphics/dcmtk: Add unversioned link to DATADIR
Mar 28 2026, 11:35 AM

Mar 26 2026

jwb committed R11:3a1985c6eda0: biology/sra-tools: Unbreak distfile (authored by jwb).
biology/sra-tools: Unbreak distfile
Mar 26 2026, 3:16 AM
jwb committed R11:1dbce6f79e25: biology/sra-tools: Update to 3.4.1 (authored by jwb).
biology/sra-tools: Update to 3.4.1
Mar 26 2026, 12:09 AM

Mar 23 2026

jwb committed R11:a2a73aef8223: biology/wfa2-lib: Update to 2.3.6 (authored by jwb).
biology/wfa2-lib: Update to 2.3.6
Mar 23 2026, 9:44 PM

Mar 22 2026

jwb committed R11:f3a8e8b50e62: biology/fastp: Update to 1.2.0 (authored by jwb).
biology/fastp: Update to 1.2.0
Mar 22 2026, 1:00 PM

Mar 11 2026

jwb committed R11:5c3d5d7070f2: biology/vsearch: Update to 2.30.5 (authored by jwb).
biology/vsearch: Update to 2.30.5
Mar 11 2026, 1:42 PM

Mar 10 2026

jwb committed R11:faadb5898d64: biology/salmon: Unbreak: Relax libgff version requirement (authored by jwb).
biology/salmon: Unbreak: Relax libgff version requirement
Mar 10 2026, 11:05 PM

Mar 7 2026

jwb committed R11:2f2d487a9f96: biology/libgff: Update to 2.0.1 (authored by jwb).
biology/libgff: Update to 2.0.1
Mar 7 2026, 7:07 PM

Mar 5 2026

jwb committed R11:9c59e8acfec3: biology/py-macs3: Update to 3.0.4 (authored by jwb).
biology/py-macs3: Update to 3.0.4
Mar 5 2026, 1:32 PM
jwb committed R11:746a50b935da: biology/atac-seq: Update to 0.3.0 (authored by jwb).
biology/atac-seq: Update to 0.3.0
Mar 5 2026, 12:44 PM
jwb committed R11:cde38c495ee7: biology/bowtie2: Update to 2.5.5 (authored by jwb).
biology/bowtie2: Update to 2.5.5
Mar 5 2026, 12:43 AM

Mar 4 2026

jwb committed R11:c05bc1293c21: biology/rna-seq: Update to 0.2.0 (authored by jwb).
biology/rna-seq: Update to 0.2.0
Mar 4 2026, 11:39 PM
jwb committed R11:64ae45e8c91f: biology/kallisto: Update to 0.52.0,1 (authored by jwb).
biology/kallisto: Update to 0.52.0,1
Mar 4 2026, 11:32 PM
jwb committed R11:81d745d79908: sysutils/auto-admin: Update to 0.8.4.24 (authored by jwb).
sysutils/auto-admin: Update to 0.8.4.24
Mar 4 2026, 2:26 PM

Feb 4 2026

jwb committed R11:6cef9ba6ad8f: sysutils/desktop-installer: Update to 1.1.1.31 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.1.31
Feb 4 2026, 4:56 PM
jwb committed R11:1a92885dedaa: sysutils/auto-admin: Update to 0.8.4.22 (authored by jwb).
sysutils/auto-admin: Update to 0.8.4.22
Feb 4 2026, 4:52 PM

Feb 1 2026

jwb committed R11:b4381c792276: biology/hisat2: Update to 2.2.2 (authored by jwb).
biology/hisat2: Update to 2.2.2
Feb 1 2026, 5:22 PM
jwb committed R11:b52b3f078fe9: devel/py-rich-click: Update to 1.9.7 (authored by jwb).
devel/py-rich-click: Update to 1.9.7
Feb 1 2026, 3:44 PM

Jan 31 2026

jwb committed R11:b03d74dfecbc: sysutils/auto-admin: Update to 0.8.4.14 (authored by jwb).
sysutils/auto-admin: Update to 0.8.4.14
Jan 31 2026, 6:27 PM

Jan 30 2026

jwb committed R11:e826eb2ffb70: devel/py-rich-click: Update to 1.9.6 (authored by jwb).
devel/py-rich-click: Update to 1.9.6
Jan 30 2026, 5:50 PM

Jan 21 2026

jwb committed R11:e14df5e88aa2: biology/vsearch: Update to 2.30.4 (authored by jwb).
biology/vsearch: Update to 2.30.4
Jan 21 2026, 6:18 PM

Jan 14 2026

jwb committed R11:07cd81ad096d: biology/vsearch: Update to 2.30.3 (authored by jwb).
biology/vsearch: Update to 2.30.3
Jan 14 2026, 12:53 AM

Jan 11 2026

jwb committed R11:aff412a94985: biology/sra-tools: Unbreak with extra JDK present (authored by jwb).
biology/sra-tools: Unbreak with extra JDK present
Jan 11 2026, 8:40 PM

Dec 21 2025

jwb committed R11:e8c5f0d0bdcf: sysutils/desktop-installer: Update to 1.1.1.13 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.1.13
Dec 21 2025, 3:39 PM
jwb committed R11:9220277b3245: sysutils/auto-admin: Update to 0.8.4.6 (authored by jwb).
sysutils/auto-admin: Update to 0.8.4.6
Dec 21 2025, 3:33 PM

Dec 20 2025

jwb committed R11:060b82b8c6a7: biology/vsearch: Add patch for FreeBSD 16 (authored by jwb).
biology/vsearch: Add patch for FreeBSD 16
Dec 20 2025, 4:30 PM

Dec 18 2025

jwb committed R11:be3bc42e2e6d: biology/vsearch: Update to 2.30.2 (authored by jwb).
biology/vsearch: Update to 2.30.2
Dec 18 2025, 7:14 PM
jwb committed R11:ab2ef91341ba: science/csvtk: Update to 0.36.0 (authored by jwb).
science/csvtk: Update to 0.36.0
Dec 18 2025, 3:58 PM
jwb committed R11:6a98f17c690d: biology/biostar-tools: Update to 2.1 (authored by jwb).
biology/biostar-tools: Update to 2.1
Dec 18 2025, 2:40 PM
jwb committed R11:9b9deea48332: biology/R-cran-BiocManager: Update to 1.30.27 (authored by jwb).
biology/R-cran-BiocManager: Update to 1.30.27
Dec 18 2025, 12:25 PM

Dec 17 2025

jwb committed R11:0b9fcf87c4ad: science/orthanc-postgresql: Update to 10.0 (authored by jwb).
science/orthanc-postgresql: Update to 10.0
Dec 17 2025, 8:28 PM
jwb committed R11:0c9f38b3b81f: biology/sra-tools: Update to 3.3.0 (authored by jwb).
biology/sra-tools: Update to 3.3.0
Dec 17 2025, 4:19 PM

Dec 16 2025

jwb committed R11:67021eded363: devel/libxtend: Update to 0.2.1.10 (authored by jwb).
devel/libxtend: Update to 0.2.1.10
Dec 16 2025, 12:08 PM

Dec 11 2025

jwb committed R11:23fef9d1fd65: sysutils/auto-admin: Update to 0.8.4.2 (authored by jwb).
sysutils/auto-admin: Update to 0.8.4.2
Dec 11 2025, 7:20 PM

Dec 7 2025

jwb committed R11:cf682fa21f29: sysutils/auto-admin: Update to 0.8.4 (authored by jwb).
sysutils/auto-admin: Update to 0.8.4
Dec 7 2025, 5:07 PM

Nov 28 2025

jwb committed R11:65a3f08310c6: science/orthanc-mysql: Bump orthanc version to 1.12.10 (authored by jwb).
science/orthanc-mysql: Bump orthanc version to 1.12.10
Nov 28 2025, 2:26 PM
jwb committed R11:4559017c3eeb: science/orthanc-postgresql: Bump orthanc version to 1.12.10 (authored by jwb).
science/orthanc-postgresql: Bump orthanc version to 1.12.10
Nov 28 2025, 2:26 PM
jwb committed R11:f83215f2a1d5: science/orthanc-dicomweb: Bump orthanc version to 1.12.10 (authored by jwb).
science/orthanc-dicomweb: Bump orthanc version to 1.12.10
Nov 28 2025, 2:26 PM
jwb committed R11:d9a91947b3c2: science/orthanc: Update to 1.12.10 (authored by jwb).
science/orthanc: Update to 1.12.10
Nov 28 2025, 2:26 PM

Nov 26 2025

jwb committed R11:836e360c06bc: sysutils/diskimage-tools: Update to 0.3.1.5 (authored by jwb).
sysutils/diskimage-tools: Update to 0.3.1.5
Nov 26 2025, 7:10 PM

Nov 13 2025

jwb committed R11:753fe08b6b51: math/rapid: DEPRECATED -> BROKEN (authored by jwb).
math/rapid: DEPRECATED -> BROKEN
Nov 13 2025, 12:47 PM

Oct 30 2025

jwb committed R11:c123af95436a: net/py-google-cloud-pubsub: Update to 2.32.0 (authored by jwb).
net/py-google-cloud-pubsub: Update to 2.32.0
Oct 30 2025, 12:43 AM

Oct 29 2025

jwb committed R11:7448f577d89a: science/csvtk: Update to 0.35.0 (authored by jwb).
science/csvtk: Update to 0.35.0
Oct 29 2025, 1:51 PM

Oct 27 2025

jwb committed R11:0bbd21d1998d: science/orthanc-postgresql: Update to 9.0 (authored by jwb).
science/orthanc-postgresql: Update to 9.0
Oct 27 2025, 5:12 PM
jwb committed R11:1e51eaa38294: science/orthanc-mysql: Update to 5.2 (authored by jwb).
science/orthanc-mysql: Update to 5.2
Oct 27 2025, 5:07 PM
jwb committed R11:a61fa75a176d: science/orthanc-dicomweb: Update to 1.21 (authored by jwb).
science/orthanc-dicomweb: Update to 1.21
Oct 27 2025, 4:58 PM
jwb committed R11:36875cd4c2bd: science/orthanc-webviewer: Update to 2.10 (authored by jwb).
science/orthanc-webviewer: Update to 2.10
Oct 27 2025, 4:47 PM
jwb committed R11:4b787786f9f1: science/orthanc: Take maintainership (authored by jwb).
science/orthanc: Take maintainership
Oct 27 2025, 1:36 PM

Oct 26 2025

jwb committed R11:97ce6f67477f: sysutils/auto-admin: Update to 0.8.3.30 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3.30
Oct 26 2025, 9:48 PM
jwb committed R11:a5ea34ce1342: sysutils/auto-admin: Update to 0.8.3.30 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3.30
Oct 26 2025, 9:46 PM

Oct 25 2025

jwb committed R11:d2dff4903648: science/orthanc: Update to 1.12.9 and unbreak (authored by jwb).
science/orthanc: Update to 1.12.9 and unbreak
Oct 25 2025, 1:02 AM

Oct 5 2025

jwb committed R11:f07bc6e23dc6: biology/vsearch: Update to 2.30.1 (authored by jwb).
biology/vsearch: Update to 2.30.1
Oct 5 2025, 6:28 PM

Oct 3 2025

jwb committed R11:e4b0269fe7a7: math/rapid: Deprecate (authored by jwb).
math/rapid: Deprecate
Oct 3 2025, 12:32 PM

Oct 1 2025

jwb committed R11:380ec0827846: net/py-google-cloud-pubsub: Python interface to Google pubsub (authored by jwb).
net/py-google-cloud-pubsub: Python interface to Google pubsub
Oct 1 2025, 2:25 AM

Sep 30 2025

jwb committed R11:b21bd86a1be5: sysutils/auto-admin: Update to 0.8.3.28 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3.28
Sep 30 2025, 8:29 PM

Sep 21 2025

jwb committed R11:ef680967ddb6: devel/mongo-c-driver: Enable SRV option by default (authored by jwb).
devel/mongo-c-driver: Enable SRV option by default
Sep 21 2025, 11:25 PM
jwb committed R11:613bcfe053d3: sysutils/desktop-installer: Update to 1.1.1.4 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.1.4
Sep 21 2025, 2:20 PM
jwb committed R11:39cc1c08f8a1: sysutils/auto-admin: Update to 0.8.3.27 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3.27
Sep 21 2025, 2:17 PM

Sep 19 2025

jwb committed R11:d94c7a1a9ee3: devel/cppcodec: Update to 0.2-11 (authored by jwb).
devel/cppcodec: Update to 0.2-11
Sep 19 2025, 3:14 PM

Sep 16 2025

jwb committed R11:4cbdaf82ef44: x11/coreterminal: Update to 5.0.0 (authored by jwb).
x11/coreterminal: Update to 5.0.0
Sep 16 2025, 1:44 PM
jwb committed R11:aca2d57f1b19: deskutils/coregarage: Update to 5.0.0 (authored by jwb).
deskutils/coregarage: Update to 5.0.0
Sep 16 2025, 1:44 PM
jwb committed R11:57f1bc675fa6: deskutils/libcprime: Update to 5.0.0 (authored by jwb).
deskutils/libcprime: Update to 5.0.0
Sep 16 2025, 1:35 PM
jwb committed R11:1c2ccb4be11c: archivers/libarchive-qt: Update to 2.0.8 (authored by jwb).
archivers/libarchive-qt: Update to 2.0.8
Sep 16 2025, 1:35 PM

Sep 14 2025

jwb committed R11:a706669299c2: comms/cutecom: Update to 0.60.0-RC1 (authored by jwb).
comms/cutecom: Update to 0.60.0-RC1
Sep 14 2025, 8:04 PM

Sep 10 2025

jwb committed R11:4ea563b952a6: sysutils/desktop-installer: Update to 1.1.1.3 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.1.3
Sep 10 2025, 4:06 PM

Sep 7 2025

jwb committed R11:3841f8ba550a: sysutils/auto-admin: Update to 0.8.3.25 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3.25
Sep 7 2025, 8:35 PM

Sep 6 2025

jwb committed R11:c209be0887f1: devel/Makefile: cpp-codec -> cppcodec (authored by jwb).
devel/Makefile: cpp-codec -> cppcodec
Sep 6 2025, 7:48 PM

Sep 5 2025

jwb committed R11:092acfc2ac18: devel/mongo-cxx-driver: MongoDB C++ driver (authored by jwb).
devel/mongo-cxx-driver: MongoDB C++ driver
Sep 5 2025, 11:52 PM
jwb committed R11:5679cabff6b1: devel/cppcodec: Library to encode/decode base64, base64url, etc. (authored by jwb).
devel/cppcodec: Library to encode/decode base64, base64url, etc.
Sep 5 2025, 11:30 PM