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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (336 w, 10 h)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity
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Sun, May 5

jwb committed R11:94ae98221aa5: biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir (authored by jwb).
biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir
Sun, May 5, 3:00 PM
jwb committed R11:5d736fc85e42: biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dir (authored by jwb).
biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dir
Sun, May 5, 2:47 PM

Wed, May 1

jwb committed R11:410ef5f336a5: sysutils/auto-admin: Update to 0.8.0.33 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.33
Wed, May 1, 1:55 PM
jwb committed R11:28e6daedef5c: sysutils/auto-admin: Update to 0.8.0.33 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.33
Wed, May 1, 1:54 PM
jwb committed R11:d43c48f14014: biology/vsearch: Update to 2.28.1 (authored by jwb).
biology/vsearch: Update to 2.28.1
Wed, May 1, 1:41 PM

Mon, Apr 22

jwb committed R11:1de14dfc3b4c: biology/wfa2-lib: Update to 2.3.5 (authored by jwb).
biology/wfa2-lib: Update to 2.3.5
Mon, Apr 22, 12:42 PM
jwb committed R11:86c8816c2c85: biology/vcflib: Update to 1.0.10 (authored by jwb).
biology/vcflib: Update to 1.0.10
Mon, Apr 22, 12:42 PM

Thu, Apr 18

jwb committed R11:6308879ec20d: biology/py-macs3: Mark not for i386 (authored by jwb).
biology/py-macs3: Mark not for i386
Thu, Apr 18, 11:04 PM

Wed, Apr 17

jwb committed R11:507fa8ab3709: biology/minimap2: Fix man prefix (authored by jwb).
biology/minimap2: Fix man prefix
Wed, Apr 17, 10:53 PM

Wed, Apr 10

jwb committed R11:fa60f361e810: biology/py-dnaio: Release to ports@ (authored by jwb).
biology/py-dnaio: Release to ports@
Wed, Apr 10, 11:43 PM
jwb committed R11:8efa6a228307: biology/minimap2: Update to 2.28 (authored by jwb).
biology/minimap2: Update to 2.28
Wed, Apr 10, 12:29 PM

Mon, Apr 8

jwb committed R11:3d100fcffcdb: biology/vsearch: Update to 2.27.1 (authored by jwb).
biology/vsearch: Update to 2.27.1
Mon, Apr 8, 9:45 PM

Apr 6 2024

jwb committed R11:7045d13e4cdf: biology/py-cutadapt: Release to ports@ (authored by jwb).
biology/py-cutadapt: Release to ports@
Apr 6 2024, 12:12 AM
jwb committed R11:f86a4bf87948: biology/p5-TrimGalore: Release to ports@ (authored by jwb).
biology/p5-TrimGalore: Release to ports@
Apr 6 2024, 12:12 AM
jwb committed R11:2bce91331ff3: biology/trimmomatic: Release to ports@ (authored by jwb).
biology/trimmomatic: Release to ports@
Apr 6 2024, 12:12 AM
jwb committed R11:204123b152c7: archivers/py-xopen: Release to ports@ (authored by jwb).
archivers/py-xopen: Release to ports@
Apr 6 2024, 12:12 AM

Apr 2 2024

jwb committed R11:7b4311b4ff25: sysutils/auto-admin: Update to 0.8.0.27 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.27
Apr 2 2024, 1:28 PM

Mar 28 2024

jwb committed R11:6f7103ecbd94: sysutils/desktop-installer: Update to 0.8.3.9 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.3.9
Mar 28 2024, 11:27 AM

Mar 18 2024

jwb committed R11:5fdc72c4df0b: UIDs, GIDs: Claim ID 464 for LPJS (Lightweight, Portable Job Scheduler) (authored by jwb).
UIDs, GIDs: Claim ID 464 for LPJS (Lightweight, Portable Job Scheduler)
Mar 18 2024, 3:36 PM
jwb committed R11:719334cd8529: biology/bifrost: Update to 1.3.5 (authored by jwb).
biology/bifrost: Update to 1.3.5
Mar 18 2024, 2:31 PM

Mar 16 2024

jwb committed R11:43e4ca8d053f: py-cutadapt: Update to 4.7 (authored by jwb).
py-cutadapt: Update to 4.7
Mar 16 2024, 1:31 PM

Mar 13 2024

jwb committed R11:59bdd5ade746: biology/minimap2: Update to 2.27 (authored by jwb).
biology/minimap2: Update to 2.27
Mar 13 2024, 1:46 PM

Feb 28 2024

jwb committed R11:ddb11fbe9778: biology/py-macs3: Update to 3.0.1 (authored by jwb).
biology/py-macs3: Update to 3.0.1
Feb 28 2024, 1:29 PM

Feb 22 2024

jwb committed R11:b647ebf06211: sysutils/auto-admin: Update to 0.8.0.25 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.25
Feb 22 2024, 1:21 AM

Feb 16 2024

jwb committed R11:306ace396259: biology/biostar-tools: Update to 1.10.1_3 (authored by jwb).
biology/biostar-tools: Update to 1.10.1_3
Feb 16 2024, 1:44 PM

Feb 7 2024

jwb committed R11:8b4861e65a3c: archivers/py-xopen: Update to 1.9.0_1 (authored by jwb).
archivers/py-xopen: Update to 1.9.0_1
Feb 7 2024, 2:01 PM

Feb 6 2024

jwb committed R11:6047d7c3fa34: security/globalprotect-openconnect: Release to ports@ (authored by jwb).
security/globalprotect-openconnect: Release to ports@
Feb 6 2024, 1:10 PM
jwb committed R11:7c280eb4247d: biology/py-cutadapt: Update to 4.6 (authored by jwb).
biology/py-cutadapt: Update to 4.6
Feb 6 2024, 12:57 PM
jwb committed R11:e35d3c95a0bd: biology/py-dnaio: Update to 1.2.0 (authored by jwb).
biology/py-dnaio: Update to 1.2.0
Feb 6 2024, 12:54 PM
jwb committed R11:4da9d2944b81: archivers/py-xopen: Update to 1.9.0 (authored by jwb).
archivers/py-xopen: Update to 1.9.0
Feb 6 2024, 12:51 PM

Jan 23 2024

jwb committed R11:c1fecdcb5649: biology/vsearch: Update to 2.27.0 (authored by jwb).
biology/vsearch: Update to 2.27.0
Jan 23 2024, 1:17 PM

Jan 18 2024

jwb committed R11:6bb47afdcc76: biology/bowtie2: Update to 2.5.3 (authored by jwb).
biology/bowtie2: Update to 2.5.3
Jan 18 2024, 11:21 PM

Jan 10 2024

jwb committed R11:999c86b25114: biology/atac-seq: Update to 0.2.0 (authored by jwb).
biology/atac-seq: Update to 0.2.0
Jan 10 2024, 4:06 PM
jwb committed R11:fabf2f6b2fbf: biology/py-macs3: Peak caller for TF binding sites (authored by jwb).
biology/py-macs3: Peak caller for TF binding sites
Jan 10 2024, 3:21 PM

Jan 5 2024

jwb committed R11:74265132881f: devel/py-joblib: Update to 1.3.2_1 (authored by jwb).
devel/py-joblib: Update to 1.3.2_1
Jan 5 2024, 4:52 PM

Dec 29 2023

jwb committed R11:bfb9d85323b9: math/py-hmmlearn: Unsupervised learning of Hidden Markov Models (authored by jwb).
math/py-hmmlearn: Unsupervised learning of Hidden Markov Models
Dec 29 2023, 4:19 PM

Dec 28 2023

jwb committed R11:c7abe68bc5bd: libxtend: Update function list man page (authored by jwb).
libxtend: Update function list man page
Dec 28 2023, 2:58 PM

Dec 16 2023

jwb committed R11:0f12812f16d4: biology/py-pybigwig: Update to 0.3.22 (authored by jwb).
biology/py-pybigwig: Update to 0.3.22
Dec 16 2023, 2:01 PM

Nov 26 2023

jwb committed R11:92927bbeb674: biology/vsearch: Update to 2.26.1 (authored by jwb).
biology/vsearch: Update to 2.26.1
Nov 26 2023, 12:33 PM

Nov 21 2023

jwb committed R11:d1bf49e31406: biology/bifrost: Update to 1.3.1 (authored by jwb).
biology/bifrost: Update to 1.3.1
Nov 21 2023, 12:58 PM

Nov 12 2023

jwb committed R11:aafea13ec8ab: biology/vsearch: Update to 2.25.0 (authored by jwb).
biology/vsearch: Update to 2.25.0
Nov 12 2023, 3:20 PM

Nov 8 2023

jwb committed R11:1e46f94e3f92: biology/bedtools: Update to 2.31.1 (authored by jwb).
biology/bedtools: Update to 2.31.1
Nov 8 2023, 4:43 PM

Nov 4 2023

jwb committed R11:ff7ea94e423a: biology/py-dna-features-viewer: Update to 3.1.3 (authored by jwb).
biology/py-dna-features-viewer: Update to 3.1.3
Nov 4 2023, 10:13 PM
jwb committed R11:8a2deaeb09da: biology/kallisto: Update to 0.50.1,1 (authored by jwb).
biology/kallisto: Update to 0.50.1,1
Nov 4 2023, 1:15 PM

Oct 29 2023

jwb committed R11:91d1591465a6: biology/biolibc-tools: Update to 0.1.4.13 (authored by jwb).
biology/biolibc-tools: Update to 0.1.4.13
Oct 29 2023, 10:42 PM
jwb committed R11:19a5683913a5: sysutils/runas: Update to 0.2.0 (authored by jwb).
sysutils/runas: Update to 0.2.0
Oct 29 2023, 11:44 AM

Oct 28 2023

jwb committed R11:de9aab9eed6c: math/basic-stats: Update to 0.1.2.8 (authored by jwb).
math/basic-stats: Update to 0.1.2.8
Oct 28 2023, 11:53 AM
jwb committed R11:3650db790aab: sysutils/npmount: Update to 0.1.1.3 (authored by jwb).
sysutils/npmount: Update to 0.1.1.3
Oct 28 2023, 11:53 AM
jwb committed R11:87c04c6960c1: biology/vcf2hap: Update to 0.1.6.7 (authored by jwb).
biology/vcf2hap: Update to 0.1.6.7
Oct 28 2023, 11:53 AM
jwb committed R11:3d57604a3c69: deskutils/qmediamanager: Update to 0.1.1.2 (authored by jwb).
deskutils/qmediamanager: Update to 0.1.1.2
Oct 28 2023, 11:53 AM
jwb committed R11:1d29500ebc10: biology/vcf-split: Update to 0.1.5.10 (authored by jwb).
biology/vcf-split: Update to 0.1.5.10
Oct 28 2023, 11:53 AM
jwb committed R11:d6b521a45588: biology/peak-classifier: Update to 0.1.4.13 (authored by jwb).
biology/peak-classifier: Update to 0.1.4.13
Oct 28 2023, 11:53 AM
jwb committed R11:b95124399e62: biology/fastq-trim: Update to 0.1.3 (authored by jwb).
biology/fastq-trim: Update to 0.1.3
Oct 28 2023, 11:53 AM
jwb committed R11:f20fa89b2c52: biology/fasda: Update to 0.1.5 (authored by jwb).
biology/fasda: Update to 0.1.5
Oct 28 2023, 11:53 AM
jwb committed R11:560a0d850d4d: biology/biolibc: Update to 0.2.6 (authored by jwb).
biology/biolibc: Update to 0.2.6
Oct 28 2023, 11:53 AM
jwb committed R11:5f2cbc8acfbc: devel/libxtend: Update to 0.2.0 (authored by jwb).
devel/libxtend: Update to 0.2.0
Oct 28 2023, 11:53 AM

Oct 27 2023

jwb committed R11:f71a4e840eae: biology/vsearch: Update to 2.24.0 (authored by jwb).
biology/vsearch: Update to 2.24.0
Oct 27 2023, 2:12 PM

Oct 23 2023

jwb committed R11:0d01cb8f261c: sysutils/linux-miniconda-installer: Add ONLY_FOR_ARCHS_REASON (authored by jwb).
sysutils/linux-miniconda-installer: Add ONLY_FOR_ARCHS_REASON
Oct 23 2023, 11:29 AM
jwb committed R11:238caeecc21b: sysutils/spcm: Update to 0.5.8 (authored by jwb).
sysutils/spcm: Update to 0.5.8
Oct 23 2023, 11:22 AM
jwb committed R11:071f3a16c9d6: sysutils/desktop-installer: Update to 0.8.3 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.3
Oct 23 2023, 11:21 AM
jwb committed R11:01c8e583c927: deskutils/freebsd-update-notify: Bump auto-admin dep version (authored by jwb).
deskutils/freebsd-update-notify: Bump auto-admin dep version
Oct 23 2023, 11:21 AM
jwb committed R11:a953b4d94414: sysutils/auto-admin: Update to 0.8.0 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0
Oct 23 2023, 11:21 AM

Oct 19 2023

jwb committed R11:afd17c07b8b2: x11/lumina-core: Fix new window resize issue (authored by jwb).
x11/lumina-core: Fix new window resize issue
Oct 19 2023, 12:50 PM

Oct 18 2023

jwb committed R11:fee1d76936f6: biology/bowtie2: Update to 2.5.2 (authored by jwb).
biology/bowtie2: Update to 2.5.2
Oct 18 2023, 12:27 PM

Oct 15 2023

jwb committed R11:f95880107ae1: biology/gcta: Add temporary hack for building on aarch64 (authored by jwb).
biology/gcta: Add temporary hack for building on aarch64
Oct 15 2023, 11:49 AM

Oct 14 2023

jwb committed R11:9d8c5cb3ebf2: biology/gcta: Update to 1.94.1 (authored by jwb).
biology/gcta: Update to 1.94.1
Oct 14 2023, 12:59 PM

Oct 11 2023

jwb committed R11:2650106a619a: biology/bifrost: Update to 1.3.0 (authored by jwb).
biology/bifrost: Update to 1.3.0
Oct 11 2023, 12:32 PM

Oct 7 2023

jwb committed R11:726aa668267c: devel/R-cran-getopt: Update to 1.20.4 (authored by jwb).
devel/R-cran-getopt: Update to 1.20.4
Oct 7 2023, 1:33 PM

Sep 29 2023

jwb committed R11:f3576d9ad821: biology/wfa2-lib: Update to 2.3.4 (authored by jwb).
biology/wfa2-lib: Update to 2.3.4
Sep 29 2023, 6:26 PM

Sep 11 2023

jwb committed R11:c8c772b79247: sysutils/runas: Run a command as another user (authored by jwb).
sysutils/runas: Run a command as another user
Sep 11 2023, 1:53 PM
jwb committed R11:eb34a410cdcf: sysutils/desktop-installer: Update to 0.8.2.2 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.2.2
Sep 11 2023, 1:21 PM

Sep 10 2023

jwb committed R11:8abd028788bc: biology/pooler: Update to 1.88 (authored by jwb).
biology/pooler: Update to 1.88
Sep 10 2023, 1:10 PM

Aug 31 2023

jwb committed R11:d276cdd564ab: deskutils/freebsd-update-notify: Update to 0.1.1.2 (authored by jwb).
deskutils/freebsd-update-notify: Update to 0.1.1.2
Aug 31 2023, 3:35 AM
jwb committed R11:8740fd954503: sysutils/auto-admin: Update to 0.7.18.7 (authored by jwb).
sysutils/auto-admin: Update to 0.7.18.7
Aug 31 2023, 3:35 AM

Aug 26 2023

jwb committed R11:6a0747976346: biology/ncbi-blast+: Update to 2.14.1 (authored by jwb).
biology/ncbi-blast+: Update to 2.14.1
Aug 26 2023, 12:57 PM

Aug 21 2023

jwb committed R11:0e8f22496e31: biology/star: Fix SIMD issue on non-amd64 (authored by jwb).
biology/star: Fix SIMD issue on non-amd64
Aug 21 2023, 2:35 PM

Aug 17 2023

jwb committed R11:a382bcefaf86: biology/star: Update to 2.7.11a (authored by jwb).
biology/star: Update to 2.7.11a
Aug 17 2023, 4:05 PM

Aug 12 2023

jwb committed R11:f38473fec0a8: biology/bifrost: Control -march via CPUTYPE make variable (authored by jwb).
biology/bifrost: Control -march via CPUTYPE make variable
Aug 12 2023, 2:42 PM

Aug 11 2023

jwb committed R11:9b09bd902830: biology/peak-classifier: Update to 0.1.4.11 (authored by jwb).
biology/peak-classifier: Update to 0.1.4.11
Aug 11 2023, 8:45 PM
jwb committed R11:67773b0db360: biology/fasda: Update to 0.1.4 (authored by jwb).
biology/fasda: Update to 0.1.4
Aug 11 2023, 8:45 PM
jwb committed R11:e9b6ad4f597e: biology/biolibc-tools: Update to 0.1.4.9 (authored by jwb).
biology/biolibc-tools: Update to 0.1.4.9
Aug 11 2023, 8:45 PM
jwb committed R11:3f56c9a9dcdd: devel/libxtend: Update to 0.1.9 (authored by jwb).
devel/libxtend: Update to 0.1.9
Aug 11 2023, 8:45 PM
jwb committed R11:c978aad1b084: biology/biolibc: Update to 0.2.5 (authored by jwb).
biology/biolibc: Update to 0.2.5
Aug 11 2023, 8:45 PM

Aug 10 2023

jwb committed R11:0f2f80ca3833: biology/sra-tools: Update to 3.0.6 (authored by jwb).
biology/sra-tools: Update to 3.0.6
Aug 10 2023, 5:20 PM

Aug 9 2023

jwb committed R11:577a373656a6: sysutils/desktop-installer: Update to 0.8.2 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.2
Aug 9 2023, 1:58 PM
jwb committed R11:691d5857000a: deskutils/freebsd-update-notify: Update to 0.1.1 (authored by jwb).
deskutils/freebsd-update-notify: Update to 0.1.1
Aug 9 2023, 1:44 PM
jwb committed R11:8a990782456e: sysutils/auto-admin: Update to 0.7.18.3 (authored by jwb).
sysutils/auto-admin: Update to 0.7.18.3
Aug 9 2023, 1:37 PM

Aug 7 2023

jwb committed R11:a308d510eb14: sysutils/devd-mount: Update to 0.1.0.7 (authored by jwb).
sysutils/devd-mount: Update to 0.1.0.7
Aug 7 2023, 5:14 PM

Aug 6 2023

jwb committed R11:80b5ad227550: x11-themes/lumina-themes: Adopt port (authored by jwb).
x11-themes/lumina-themes: Adopt port
Aug 6 2023, 10:01 PM
jwb committed R11:fb487e6a5610: x11/lumina-core: Expand battery icon notification (authored by jwb).
x11/lumina-core: Expand battery icon notification
Aug 6 2023, 9:57 PM
jwb committed R11:d25fa2e8d52f: devel/yaggo: Update to 1.5.11 (authored by jwb).
devel/yaggo: Update to 1.5.11
Aug 6 2023, 7:42 PM
jwb committed R11:e97c3457489f: biology/py-macs2: Update to 2.2.9.1 (authored by jwb).
biology/py-macs2: Update to 2.2.9.1
Aug 6 2023, 6:18 PM
jwb committed R11:822fdafc3e69: devel/py-cykhash: CHEESESHOP -> PYPI (authored by jwb).
devel/py-cykhash: CHEESESHOP -> PYPI
Aug 6 2023, 5:58 PM
jwb committed R11:36f9e292e5d2: devel/Makefile: Add py-cykhash (authored by jwb).
devel/Makefile: Add py-cykhash
Aug 6 2023, 3:36 PM
jwb committed R11:21e0240b8fe6: devel/py-cykhash: Cython equivalent to khash-sets/maps (authored by jwb).
devel/py-cykhash: Cython equivalent to khash-sets/maps
Aug 6 2023, 3:36 PM

Aug 5 2023

jwb committed R11:322706681cac: p5-transdecoder: Update to 5.7.1 (authored by jwb).
p5-transdecoder: Update to 5.7.1
Aug 5 2023, 9:00 PM
jwb committed R11:fa7be670b40b: biology/py-htseq: Update to 2.0.4 (authored by jwb).
biology/py-htseq: Update to 2.0.4
Aug 5 2023, 4:41 PM
jwb committed R11:a084c0b08822: biology/py-multiqc: Update to 1.15 (authored by jwb).
biology/py-multiqc: Update to 1.15
Aug 5 2023, 4:20 PM

Jul 31 2023

jwb committed R11:abf65f917805: deskutils/freebsd-update-notify: Desktop notification for av. updates (authored by jwb).
deskutils/freebsd-update-notify: Desktop notification for av. updates
Jul 31 2023, 3:25 PM
jwb committed R11:3a654ece10c9: biology/rna-seq: Add biology/star dep to metaport (authored by jwb).
biology/rna-seq: Add biology/star dep to metaport
Jul 31 2023, 2:37 PM