Systems manager and facilitator for Research Computing at the University of Wisconsin -- Milwaukee
User Details
User Details
- User Since
- Nov 27 2017, 4:37 PM (112 w, 6 d)
Thu, Jan 23
Thu, Jan 23
sysutils/slurm-wlm: Upgrade to 19.05.5
sysutils/desktop-installer: Upgrade to 0.6.11
sysutils/auto-admin: Upgrade to 0.5.1
Thu, Jan 16
Thu, Jan 16
sysutils/desktop-installer: Upgrade to 0.6.10
sysutils/autoadmin: Upgrade to 0.5.0
Tue, Jan 14
Tue, Jan 14
jwb committed rP523074: biology/gemma: Unbreak build.
biology/gemma: Unbreak build
Sat, Jan 11
Sat, Jan 11
jwb committed rP522687: biology/py-macs2: Upgrade to 2.2.6.
biology/py-macs2: Upgrade to 2.2.6
Sun, Dec 29
Sun, Dec 29
Update WiFi failover example in advanced-networking.
Sat, Dec 28
Sat, Dec 28
jwb added a comment to D22708: Fix the Ethernet+WiFi example.
I actually put the note right after the statement it's clarifying:
jwb added a comment to D22708: Fix the Ethernet+WiFi example.
Only the PDF output is screwy and I can verify using the HTML, so I'll go ahead with the commit shortly. I made one small change, adding a note to inform the reader why we should change the Ethernet MAC rather than the WiFi:
jwb added a comment to D22708: Fix the Ethernet+WiFi example.
In the resulting text:
jwb added a comment to D22708: Fix the Ethernet+WiFi example.
I'm trying to build-test per https://www.freebsd.org/doc/en_US.ISO8859-1/books/fdp-primer/overview.html and I'm getting nothing but '#' symbols for the text. Anybody seen this issue before?
Dec 26 2019
Dec 26 2019
biology/ncbi-blast+: Upgrade to 2.10.0
Dec 19 2019
Dec 19 2019
jwb committed rP520414: biology/bedtools: Upgrade to 2.29.2.
biology/bedtools: Upgrade to 2.29.2
Dec 17 2019
Dec 17 2019
jwb added a comment to D22708: Fix the Ethernet+WiFi example.
Didn't know that was possible. I'm going to be swamped for the next week or two, but I'll look into it ASAP after that.
Dec 15 2019
Dec 15 2019
jwb added a comment to D22708: Fix the Ethernet+WiFi example.
I'm currently only a ports committer, so this will have to fall on someone else.
jwb accepted D22708: Fix the Ethernet+WiFi example.
Barring any typos that escaped my notice, looks fine to me. Thanks for your work on this!
Dec 11 2019
Dec 11 2019
jwb committed rP519810: biology/bedtools: Upgrade to 2.29.1.
biology/bedtools: Upgrade to 2.29.1
Nov 28 2019
Nov 28 2019
biology/unanimity: Remove erroneous BROKEN
Nov 27 2019
Nov 27 2019
sysutils/desktop-installer: Upgrade to 0.6.9
Nov 26 2019
Nov 26 2019
jwb committed rP518470: biology/py-multiqc: Upgrade to 1.8.
biology/py-multiqc: Upgrade to 1.8
biology/p5-TrimGalore: Upgrade to 0.6.5
Nov 24 2019
Nov 24 2019
biology/unanimity and dependencies: Flag as no longer open source
Nov 23 2019
Nov 23 2019
sysutils/desktop-installer: Upgrade to 0.6.8
sysutils/auto-admin: Upgrade to 0.4.9
jwb committed rP518242: biology/py-cutadapt: Upgrade to 2.7.
biology/py-cutadapt: Upgrade to 2.7
archivers/py-xopen: Upgrade to 0.8.4
jwb committed rP518240: biology/py-dnaio: Upgrade to 0.4.1.
biology/py-dnaio: Upgrade to 0.4.1
Nov 17 2019
Nov 17 2019
biology/haplohseq: Switch to distfile with example data
Nov 16 2019
Nov 16 2019
jwb committed rP517777: devel/R-cran-optparse: Command line flag parser inspired by Python's optparse.
devel/R-cran-optparse: Command line flag parser inspired by Python's optparse
devel/R-cran-getopt: Accept short and long flags in Rscript
Nov 8 2019
Nov 8 2019
jwb committed rP517066: biology/canu: Upgrade to 1.9.
biology/canu: Upgrade to 1.9
Nov 6 2019
Nov 6 2019
jwb committed rP516853: biology/kallisto: Upgrade to 0.46.1.
biology/kallisto: Upgrade to 0.46.1
Oct 6 2019
Oct 6 2019
jwb committed rP513915: biology/star: Upgrade to 2.7.2d.
biology/star: Upgrade to 2.7.2d
jwb committed rP513910: biology/fastahack: Upgrade to 1.0.0.
biology/fastahack: Upgrade to 1.0.0
Sep 27 2019
Sep 27 2019
biology/tophat: Fast splice junction mapper for RNA-Seq reads
Sep 23 2019
Sep 23 2019
biology/py-multiqc: Aggregate bioinformatics analysis reports
Sep 22 2019
Sep 22 2019
science/packmol: Pack molecules in defined regions of space
archivers/py-lzstring: LZ-based in-memory string compression
jwb committed rP512590: graphics/py-spectra: Color scales and color conversion made easy for Python.
graphics/py-spectra: Color scales and color conversion made easy for Python
Sep 21 2019
Sep 21 2019
biology/p5-TrimGalore: Upgrade to 0.6.4
jwb committed rP512461: biology/fastqc: Upgrade to 0.11.8.
biology/fastqc: Upgrade to 0.11.8
Sep 16 2019
Sep 16 2019
biology/haplohseq: Identify regions of allelic imbalance
Sep 14 2019
Sep 14 2019
sysutils/slurm-wlm: Temporary patch to silence job accounting errors
biology/trimmomatic: Upgrade to 0.39
Sep 13 2019
Sep 13 2019
jwb committed rP511958: biology/bedtools: Upgrade to 2.29.0.
biology/bedtools: Upgrade to 2.29.0
jwb committed rP511957: biology/py-cutadapt: Upgrade to 2.5.
biology/py-cutadapt: Upgrade to 2.5
Aug 17 2019
Aug 17 2019
sysutils/desktop-installer: Upgrade to 0.6.7
Aug 13 2019
Aug 13 2019
jwb committed rP508832: biology/bolt-lmm: Upgrade to 2.3.4.
biology/bolt-lmm: Upgrade to 2.3.4
Aug 4 2019
Aug 4 2019
Jul 25 2019
Jul 25 2019
sysutils/desktop-installer: Upgrade to 0.6.6
sysutils/auto-admin: Upgrade to 0.4.8
Jul 21 2019
Jul 21 2019
sysutils/slurm-wlm: Upgrade to 19.05.1-2
Jul 12 2019
Jul 12 2019
ncbi-blast+: Unbreak build with gcc8 following gcc9 patch
Jul 11 2019
Jul 11 2019
jwb committed rP506409: ncbi-blast+: Fix build with gcc9.
ncbi-blast+: Fix build with gcc9
Jun 18 2019
Jun 18 2019
jwb committed rP504496: science/afni: Upgrade to 19.1.20.
science/afni: Upgrade to 19.1.20
Jun 14 2019
Jun 14 2019
jwb committed rP504153: biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.pl.
biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.pl
jwb committed rP504151: sysutils/slurm-wlm: Revert previous change enabling Linux option by default.
sysutils/slurm-wlm: Revert previous change enabling Linux option by default
Jun 13 2019
Jun 13 2019
sysutils/slurm-wlm: Enable jobacct_gather/linux by default
Jun 12 2019
Jun 12 2019
biology/ncbi-blast+: Upgrade to 2.9.0
jwb committed rP504011: biology/kallisto: Upgrade to 0.46.0.
biology/kallisto: Upgrade to 0.46.0
Jun 8 2019
Jun 8 2019
jwb committed rP503747: science/afni: Upgrade to 19.1.18.
science/afni: Upgrade to 19.1.18
Jun 1 2019
Jun 1 2019
jwb committed rP503233: science/afni: Upgrade to 19.1.14.
science/afni: Upgrade to 19.1.14
May 26 2019
May 26 2019
biology/bolt-lmm: Mixed model association testing and variance component…
May 22 2019
May 22 2019
jwb committed rP502266: science/afni: Upgrade to 19.1.10.
science/afni: Upgrade to 19.1.10
May 20 2019
May 20 2019
sysutils/slurm-wlm: Remove redundant USE_GCC
biology/fastp: Remove redundant USE_GCC
jwb committed rP502158: science/afni: Upgrade to 19.1.08.
science/afni: Upgrade to 19.1.08
May 18 2019
May 18 2019
biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCC
May 17 2019
May 17 2019
biology/gemma: Genome-wide Efficient Mixed Model Association
May 15 2019
May 15 2019
sysutils/slurm-wlm: Upgrade to 18.08.7
May 13 2019
May 13 2019
biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64
May 11 2019
May 11 2019
jwb committed rP501259: biology/vsearch: Update to 2.13.4.
biology/vsearch: Update to 2.13.4
biology/trimadap: Mark only for amd64 and i386
May 10 2019
May 10 2019
biology/stacks: Remove obsolete pkg-message regarding web interface
jwb committed rP501199: biology/stacks: Upgrade to 2.4.
biology/stacks: Upgrade to 2.4
May 9 2019
May 9 2019
biology/vsearch: Remove powerpc64 support
biology/vsearch: Versatile open-source tool for metagenomics
May 5 2019
May 5 2019
jwb committed rP500860: biology/minimap2: Upgrade to 2.17.
biology/minimap2: Upgrade to 2.17
May 4 2019
May 4 2019
jwb committed rP500812: biology/ddocent: Upgrade to 2.7.8.
biology/ddocent: Upgrade to 2.7.8
biology/fastp: Respect WITH_DEBUG - do not strip binary
May 3 2019
May 3 2019
biology/fastp: Ultra-fast all-in-one FASTQ preprocessor
May 2 2019
May 2 2019
biology/star: Force newer GCC on platforms with GCC 4.2 base
Apr 27 2019
Apr 27 2019
jwb committed rP500187: biology/py-cutadapt: Upgrade to 2.3.
biology/py-cutadapt: Upgrade to 2.3
archivers/py-xopen: Upgrade to 0.5.1
Apr 24 2019
Apr 24 2019
jwb committed rP499895: biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequences.
biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequences
biology/bowtie2: Clarify CPU-specificity
Apr 23 2019
Apr 23 2019
biology/star: Modify PKGBASE to avoid conflict with archivers/star
Apr 21 2019
Apr 21 2019
biology/star: Spliced Transcripts Alignment to a Reference
jwb committed rP499544: biology/bowtie2: Upgrade to 2.3.5.1.
biology/bowtie2: Upgrade to 2.3.5.1
Apr 18 2019
Apr 18 2019
biology/canu: Fix build on powerpc64 and aarch64
Mar 24 2019
Mar 24 2019
biology/p5-TrimGalore: Upgrade to 0.6.1
jwb committed rP496783: biology/py-cutadapt: Upgrade to 2.1.
biology/py-cutadapt: Upgrade to 2.1
Answered my own question + received some feedback.
archivers/py-xopen: Upgrade to 0.5.0
biology/py-dnaio: Read and write FASTQ and FASTA
jwb updated the diff for D19693: biology/py-dnaio: Read and write FASTQ and FASTA.
Thanks, checksubdirs is not mentioned in the FAQ. It just says to make
sure you don't want a repocopy instead, and use Tools/scripts/addport.