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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (394 w, 22 h)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity
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Yesterday

jwb committed R11:027b959425c8: biology/minimap2: Update to 2.30 (authored by jwb).
biology/minimap2: Update to 2.30
Mon, Jun 16, 1:10 PM

Sat, Jun 14

jwb committed R11:ec7391b149b9: devel/isa-l: Enable build on aarch64 (authored by jwb).
devel/isa-l: Enable build on aarch64
Sat, Jun 14, 12:18 PM

Wed, Jun 11

jwb committed R11:e91e2f54bddb: biology/py-pydeseq2: Python reimplementation of the DESeq2 R package (authored by jwb).
biology/py-pydeseq2: Python reimplementation of the DESeq2 R package
Wed, Jun 11, 2:25 PM
jwb committed R11:cfe792f0ddf0: math/py-formulaic-contrasts: Build arbitrary contrasts formulaic models (authored by jwb).
math/py-formulaic-contrasts: Build arbitrary contrasts formulaic models
Wed, Jun 11, 2:21 PM
jwb committed R11:0b1ab7cf4c4d: devel/py-joblib: Unbreak build (authored by jwb).
devel/py-joblib: Unbreak build
Wed, Jun 11, 2:11 PM

Sat, Jun 7

jwb committed R11:b902f8f425a4: biology/fastp: Update to 0.26.0 (authored by jwb).
biology/fastp: Update to 0.26.0
Sat, Jun 7, 12:32 PM

Thu, Jun 5

jwb committed R11:45095055298e: sysutils/auto-admin: Update to 0.8.3.7 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3.7
Thu, Jun 5, 12:45 PM

Wed, Jun 4

jwb committed R11:cb80427150ce: biology/seqtk: Update to 1.5 (authored by jwb).
biology/seqtk: Update to 1.5
Wed, Jun 4, 2:21 PM
jwb committed R11:3a7978fed606: biology/bcftools: Update to 1.22 (authored by jwb).
biology/bcftools: Update to 1.22
Wed, Jun 4, 1:26 PM
jwb committed R11:3c62a6836854: biology/samtools: Update to 1.22 (authored by jwb).
biology/samtools: Update to 1.22
Wed, Jun 4, 1:26 PM
jwb committed R11:c8a79b9a3b12: biology/htslib: Update to 1.22 (authored by jwb).
biology/htslib: Update to 1.22
Wed, Jun 4, 1:26 PM

Sun, Jun 1

jwb committed R11:78e546084e93: biology/fastp: Update to 0.25.0 (authored by jwb).
biology/fastp: Update to 0.25.0
Sun, Jun 1, 1:28 PM

Fri, May 30

jwb committed R11:b3918a5e6eea: biology/fastp: Update to 0.24.3 (authored by jwb).
biology/fastp: Update to 0.24.3
Fri, May 30, 1:07 PM

Tue, May 27

jwb committed R11:b15df322b48c: biology/kallisto: Remove USE_GCC, fix build with clang19 (authored by jwb).
biology/kallisto: Remove USE_GCC, fix build with clang19
Tue, May 27, 2:20 PM
jwb committed R11:bba37490f132: biology/bifrost: Remove USE_GCC, fix build with clang19 (authored by jwb).
biology/bifrost: Remove USE_GCC, fix build with clang19
Tue, May 27, 2:09 PM

Sun, May 25

jwb committed R11:7611c373bf8f: biology/fasda: Update to 0.2.0.1 (authored by jwb).
biology/fasda: Update to 0.2.0.1
Sun, May 25, 2:27 PM

Fri, May 23

jwb committed R11:b3b1a391c149: biology/megahit: Update to 1.2.9.20 (authored by jwb).
biology/megahit: Update to 1.2.9.20
Fri, May 23, 12:34 PM

Tue, May 20

jwb committed R11:51c1f17ce70a: biology/haplohseq: Update to 0.1.2.3 (authored by jwb).
biology/haplohseq: Update to 0.1.2.3
Tue, May 20, 11:33 PM
jwb committed R11:bd2f753fe114: biology/lamarc: New maintainer hayzam@alchemilla.io (authored by jwb).
biology/lamarc: New maintainer hayzam@alchemilla.io
Tue, May 20, 11:17 PM
jwb committed R11:ba0d68b692fc: biology/lamarc: Unbreak build on 14.x (authored by jwb).
biology/lamarc: Unbreak build on 14.x
Tue, May 20, 11:32 AM

Mon, May 19

jwb committed R11:101f13edbc07: biology/bamtools: Update to 2.5.3 (authored by jwb).
biology/bamtools: Update to 2.5.3
Mon, May 19, 9:23 PM

May 15 2025

jwb committed R11:3ae8b09ca041: biology/vcftools: Update to 0.1.17 (authored by jwb).
biology/vcftools: Update to 0.1.17
May 15 2025, 12:29 PM
jwb committed R11:18cabe581ff1: biology/kallisto: Unbreak build on 15-CURRENT (authored by jwb).
biology/kallisto: Unbreak build on 15-CURRENT
May 15 2025, 11:46 AM
jwb committed R11:40478d7acd2a: biology/bifrost: Unbreak build on 15-CURRENT (authored by jwb).
biology/bifrost: Unbreak build on 15-CURRENT
May 15 2025, 11:39 AM

May 8 2025

jwb committed R11:c3626a7f1664: sysutils/desktop-installer: Update to 1.1.1 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.1
May 8 2025, 9:44 PM
jwb committed R11:a654249b48c6: sysutils/auto-admin: Update to 0.8.3 (authored by jwb).
sysutils/auto-admin: Update to 0.8.3
May 8 2025, 9:43 PM

May 5 2025

jwb committed R11:9a23beadaa33: biology/fasda-utils: Update to 0.1.0.2 (authored by jwb).
biology/fasda-utils: Update to 0.1.0.2
May 5 2025, 9:46 PM

May 4 2025

jwb committed R11:1a7bd4d40277: sysutils/linux-miniconda-installer: Update to 0.1.0.6 (authored by jwb).
sysutils/linux-miniconda-installer: Update to 0.1.0.6
May 4 2025, 12:35 PM
jwb committed R11:3a58d96ad5ab: sysutils/linux-miniconda-installer: Update to 0.1.0.4 (authored by jwb).
sysutils/linux-miniconda-installer: Update to 0.1.0.4
May 4 2025, 12:27 PM

Apr 30 2025

jwb committed R11:f34a8493a4c4: sysutils/auto-admin: Update to 0.8.2 (authored by jwb).
sysutils/auto-admin: Update to 0.8.2
Apr 30 2025, 11:15 AM
jwb committed R11:b5fed385507c: biology/fastq-trim: Update to 0.1.4 (authored by jwb).
biology/fastq-trim: Update to 0.1.4
Apr 30 2025, 11:12 AM

Apr 28 2025

jwb committed R11:6034a63dcea9: biology/fasda-utils: Update to 0.1.0.1 (authored by jwb).
biology/fasda-utils: Update to 0.1.0.1
Apr 28 2025, 3:43 PM
jwb committed R11:39b2e62d29fa: biology/vcflib: Update to 1.0.13 (authored by jwb).
biology/vcflib: Update to 1.0.13
Apr 28 2025, 11:43 AM

Apr 26 2025

jwb committed R11:0bef7dda8ca9: biology/biolibc-tools: Update to 0.1.5 (authored by jwb).
biology/biolibc-tools: Update to 0.1.5
Apr 26 2025, 8:41 PM
jwb committed R11:aa9df88f1c31: biology/fasda: Update to 0.2.0 (authored by jwb).
biology/fasda: Update to 0.2.0
Apr 26 2025, 8:39 PM
jwb committed R11:f680350d5ef9: biology/biolibc: Update to 0.2.7 (authored by jwb).
biology/biolibc: Update to 0.2.7
Apr 26 2025, 8:37 PM
jwb committed R11:cff47c67ef95: devel/libxtend: Update to 0.2.1 (authored by jwb).
devel/libxtend: Update to 0.2.1
Apr 26 2025, 8:35 PM

Apr 20 2025

jwb committed R11:cdd5a51ea04a: biology/minimap2: Update to 2.29 (authored by jwb).
biology/minimap2: Update to 2.29
Apr 20 2025, 1:19 PM

Apr 17 2025

jwb committed R11:b3f6f8596df4: biology/fastp: Update to 0.24.1 (authored by jwb).
biology/fastp: Update to 0.24.1
Apr 17 2025, 12:52 PM

Apr 16 2025

jwb committed R11:6d74c851a644: sysutils/diskimage-tools: Unbreak build (authored by jwb).
sysutils/diskimage-tools: Unbreak build
Apr 16 2025, 4:42 PM

Apr 6 2025

jwb committed R11:cc15cab2da4c: biology/fasda-utils: Fast and simple differential analysis extras (authored by jwb).
biology/fasda-utils: Fast and simple differential analysis extras
Apr 6 2025, 11:28 AM

Mar 27 2025

jwb committed R11:888c0b0e32d3: biology/subread: Update to 2.1.0 (authored by jwb).
biology/subread: Update to 2.1.0
Mar 27 2025, 10:06 PM

Mar 21 2025

jwb committed R11:a57f4b8deadd: biology/sra-tools: Update to 3.2.1 (authored by jwb).
biology/sra-tools: Update to 3.2.1
Mar 21 2025, 11:29 AM

Mar 19 2025

jwb committed R11:da25ff8f31cd: biology/py-macs3: Unbreak package build (authored by jwb).
biology/py-macs3: Unbreak package build
Mar 19 2025, 1:46 PM

Mar 13 2025

jwb committed R11:2e67831b3ea0: sysutils/desktop-installer: Update to 1.1.0.6 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.0.6
Mar 13 2025, 4:36 PM
jwb committed R11:655c50cfc53d: science/csvtk: Update to 0.33.0 (authored by jwb).
science/csvtk: Update to 0.33.0
Mar 13 2025, 12:37 PM

Mar 11 2025

jwb committed R11:a7c9cc2b093f: math/py-hmmlearn: Unbreak poudriere build (authored by jwb).
math/py-hmmlearn: Unbreak poudriere build
Mar 11 2025, 2:56 PM

Mar 7 2025

jwb committed R11:c2d10be9f215: biology/py-macs3: Update to 3.0.3 (authored by jwb).
biology/py-macs3: Update to 3.0.3
Mar 7 2025, 2:30 PM

Mar 6 2025

jwb committed R11:8de761e7d400: biology/ncbi-blast+: Update to 2.16.0_3 (authored by jwb).
biology/ncbi-blast+: Update to 2.16.0_3
Mar 6 2025, 12:44 PM

Mar 4 2025

jwb committed R11:886844b5ecf8: biology/py-crossmap: Update to 0.7.3 (authored by jwb).
biology/py-crossmap: Update to 0.7.3
Mar 4 2025, 1:15 PM

Mar 2 2025

jwb committed R11:84399cefee34: biology/vsearch: Update to 2.30.0 (authored by jwb).
biology/vsearch: Update to 2.30.0
Mar 2 2025, 12:38 PM

Feb 21 2025

jwb committed R11:d758b1caa19e: Multiple biology ports: Replace pypi homepage with github (authored by jwb).
Multiple biology ports: Replace pypi homepage with github
Feb 21 2025, 1:05 PM

Feb 18 2025

jwb committed R11:bac90e855c13: biology/freebayes: Update to 1.3.9 (authored by jwb).
biology/freebayes: Update to 1.3.9
Feb 18 2025, 8:47 PM
jwb committed R11:813f71aa155a: biology/tabixpp: Undeprecate and update to 1.1.2 (authored by jwb).
biology/tabixpp: Undeprecate and update to 1.1.2
Feb 18 2025, 3:40 PM
jwb committed R11:38e86db59cdc: biology/tabixpp: Update to 1.1.2 (authored by jwb).
biology/tabixpp: Update to 1.1.2
Feb 18 2025, 3:40 PM
jwb committed R11:03b4820d4c5b: devel/intervaltree: Minimal C++ interval tree implementation (authored by jwb).
devel/intervaltree: Minimal C++ interval tree implementation
Feb 18 2025, 2:57 PM

Feb 16 2025

jwb committed R11:4bbc35807790: biology/vsearch: Update to 2.29.4 (authored by jwb).
biology/vsearch: Update to 2.29.4
Feb 16 2025, 2:21 PM
jwb committed R11:ef08ef1262c3: archivers/vbz-compression: Update to 1.0.13 (authored by jwb).
archivers/vbz-compression: Update to 1.0.13
Feb 16 2025, 1:18 PM

Feb 12 2025

jwb committed R11:ac235c50dc8f: sysutils/desktop-installer: Update to 1.1.0.5 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.0.5
Feb 12 2025, 7:24 PM

Feb 8 2025

jwb committed R11:f0a998aad6e9: sysutils/desktop-installer: Update to 1.1.0.2 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.0.2
Feb 8 2025, 5:59 PM

Feb 4 2025

jwb committed R11:222db315a10a: sysutils/desktop-installer: Update to 1.1.0 (authored by jwb).
sysutils/desktop-installer: Update to 1.1.0
Feb 4 2025, 4:05 PM
jwb committed R11:fa1e2038c23b: sysutils/auto-admin: Update to 0.8.1 (authored by jwb).
sysutils/auto-admin: Update to 0.8.1
Feb 4 2025, 4:05 PM
jwb committed R11:be795d728897: textproc/xml-format: Add missing dep (authored by jwb).
textproc/xml-format: Add missing dep
Feb 4 2025, 12:49 PM

Feb 3 2025

jwb committed R11:d426cea9b31c: textproc/xml-format: Update to 0.2.0.3 (authored by jwb).
textproc/xml-format: Update to 0.2.0.3
Feb 3 2025, 11:17 PM
jwb committed R11:aa76d692b293: sysutils/mcweject: Deprecate (authored by jwb).
sysutils/mcweject: Deprecate
Feb 3 2025, 11:10 PM
jwb committed R11:4c7ab59d2705: sysutils/endian: Update to 1.1.6 (authored by jwb).
sysutils/endian: Update to 1.1.6
Feb 3 2025, 11:08 PM
jwb committed R11:97b7e676be66: sysutils/diskimage-tools: Update to 0.3.1.1 (authored by jwb).
sysutils/diskimage-tools: Update to 0.3.1.1
Feb 3 2025, 10:26 PM
jwb committed R11:10a5ec03125f: math/matlab-installer: Deprecate (authored by jwb).
math/matlab-installer: Deprecate
Feb 3 2025, 10:08 PM
jwb committed R11:4a351aa5583d: math/matlab-installer: Deprecate (authored by jwb).
math/matlab-installer: Deprecate
Feb 3 2025, 9:27 PM
jwb committed R11:379a571b580c: devel/roboctl: Update to 0.3.9.4 (authored by jwb).
devel/roboctl: Update to 0.3.9.4
Feb 3 2025, 4:45 PM
jwb committed R11:d6270774dbd2: www/webbrowser: Update to 0.4.0 (authored by jwb).
www/webbrowser: Update to 0.4.0
Feb 3 2025, 3:48 PM
jwb committed R11:4f5877361b25: devel/libgamepad: Update to 0.1.2.4 (authored by jwb).
devel/libgamepad: Update to 0.1.2.4
Feb 3 2025, 3:39 PM

Jan 29 2025

jwb committed R11:bb5aff4439a5: biology/sra-tools: Update to 3.2.0 (authored by jwb).
biology/sra-tools: Update to 3.2.0
Jan 29 2025, 8:20 PM

Jan 25 2025

jwb committed R11:2889989be020: biology/mmseqs2: Update to 17.b804.f (authored by jwb).
biology/mmseqs2: Update to 17.b804.f
Jan 25 2025, 1:24 PM

Jan 21 2025

jwb committed R11:88365ea6e44a: science/packmol: Update to 20.15.3 (authored by jwb).
science/packmol: Update to 20.15.3
Jan 21 2025, 3:19 PM

Jan 20 2025

jwb committed R11:e241945e9d86: devel/R-cran-optparse: Update to 1.7.5 (authored by jwb).
devel/R-cran-optparse: Update to 1.7.5
Jan 20 2025, 7:35 PM

Jan 19 2025

jwb committed R11:cad392241a59: biology/subread: Update to 2.0.8 (authored by jwb).
biology/subread: Update to 2.0.8
Jan 19 2025, 12:50 PM

Jan 17 2025

jwb committed R11:e3e3bee19927: biology/stacks: Update to 2.68 (authored by jwb).
biology/stacks: Update to 2.68
Jan 17 2025, 10:40 PM

Jan 16 2025

jwb committed R11:695d1ac4d136: biology/py-bcbio-gff: Update to 0.7.1 (authored by jwb).
biology/py-bcbio-gff: Update to 0.7.1
Jan 16 2025, 1:00 PM
jwb committed R11:25e2eac767b4: biology/bbmap: Update to 39.15 (authored by jwb).
biology/bbmap: Update to 39.15
Jan 16 2025, 12:42 PM

Jan 15 2025

jwb committed R11:4fd08b5074ce: biology/mmseqs2: Update to 16.747.c6 (authored by jwb).
biology/mmseqs2: Update to 16.747.c6
Jan 15 2025, 3:08 PM

Jan 14 2025

jwb committed R11:b324d354c77d: biology/ncbi-blast+: Update to 2.16.0 (authored by jwb).
biology/ncbi-blast+: Update to 2.16.0
Jan 14 2025, 5:47 PM
jwb committed R11:b79289d3706a: archivers/vbz-compression: Update to 1.0.12 (authored by jwb).
archivers/vbz-compression: Update to 1.0.12
Jan 14 2025, 2:22 PM
jwb committed R11:ddf239b5eee8: archivers/streamvbyte: Update to 2.0.0 (authored by jwb).
archivers/streamvbyte: Update to 2.0.0
Jan 14 2025, 1:13 PM

Jan 13 2025

jwb committed R11:1f224e0bb61a: biology/bbmap: Update to 39.14 (authored by jwb).
biology/bbmap: Update to 39.14
Jan 13 2025, 9:57 PM
jwb committed R11:3258874a89d6: science/csvtk: Update to 0.32.0 (authored by jwb).
science/csvtk: Update to 0.32.0
Jan 13 2025, 1:44 PM

Dec 29 2024

jwb committed R11:cafc58d02dee: biology/vsearch: Update to 2.29.2 (authored by jwb).
biology/vsearch: Update to 2.29.2
Dec 29 2024, 8:59 PM

Dec 12 2024

jwb committed R11:1f91b7d817f6: biology/py-multiqc: Add missing py-natsort RUN_DEPEND (authored by jwb).
biology/py-multiqc: Add missing py-natsort RUN_DEPEND
Dec 12 2024, 2:53 PM
jwb committed R11:7e69f83edba6: graphics/py-spectra: Add missing py-colormath RUN_DEPEND (authored by jwb).
graphics/py-spectra: Add missing py-colormath RUN_DEPEND
Dec 12 2024, 2:46 PM

Dec 6 2024

jwb committed R11:c543b2f67456: security/hidden-lake: F2F Anonymous network based on the QB-problem (authored by jwb).
security/hidden-lake: F2F Anonymous network based on the QB-problem
Dec 6 2024, 11:18 PM
jwb committed R11:0e30cf43051d: biology/gemma: Update to 0.98.5 (authored by jwb).
biology/gemma: Update to 0.98.5
Dec 6 2024, 2:39 PM

Dec 3 2024

jwb committed R11:12b5c3c8f16f: biology/fasttree: Update to 2.1.11 (authored by jwb).
biology/fasttree: Update to 2.1.11
Dec 3 2024, 2:55 PM

Nov 28 2024

jwb committed R11:9cb153ab3484: biology/ucsc-userapps: Update to v474 (authored by jwb).
biology/ucsc-userapps: Update to v474
Nov 28 2024, 3:59 PM
jwb committed R11:1c5c1f0c3a2e: py-htseq: New maintainer (authored by jwb).
py-htseq: New maintainer
Nov 28 2024, 12:23 PM

Nov 27 2024

jwb committed R11:b07c925f99cf: biology/py-htseq: Update to 2.0.9 (authored by jwb).
biology/py-htseq: Update to 2.0.9
Nov 27 2024, 1:46 PM

Nov 25 2024

jwb committed R11:3f6b18bb3857: biology/vcflib: Update to 1.0.12 (authored by jwb).
biology/vcflib: Update to 1.0.12
Nov 25 2024, 2:50 PM

Nov 24 2024

jwb committed R11:1c58b378342d: preseq: Not for 32-bit platforms (authored by jwb).
preseq: Not for 32-bit platforms
Nov 24 2024, 1:52 PM
jwb committed R11:482229547aae: bwa: New maintainer (authored by jwb).
bwa: New maintainer
Nov 24 2024, 1:38 PM
jwb committed R11:f488a27c4d56: biology/bwa: Update to 0.7.18 (authored by jwb).
biology/bwa: Update to 0.7.18
Nov 24 2024, 1:36 PM

Nov 22 2024

jwb committed R11:ea071869c7ee: graphics/py-plotly: Fix mangled pkg-descr (authored by jwb).
graphics/py-plotly: Fix mangled pkg-descr
Nov 22 2024, 8:58 PM