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jwb (jwb@freebsd.org)
Scientific computing instructor, bioinformatics consultant

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User Details

User Since
Nov 27 2017, 4:37 PM (358 w, 1 d)

Instructor for Research Computing, etc. at the University of Wisconsin -- Milwaukee

Recent Activity
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Thu, Sep 19

jwb committed R11:c449c3e4774f: biology/kallisto: Update to 0.51.1,1 (authored by jwb).
biology/kallisto: Update to 0.51.1,1
Thu, Sep 19, 10:48 PM

Sat, Sep 14

jwb committed R11:fbb86e94a87c: biology/py-macs3: Update to 3.0.2 (authored by jwb).
biology/py-macs3: Update to 3.0.2
Sat, Sep 14, 1:24 PM
jwb committed R11:71b1f8dd1923: math/py-hmmlearn: Update to 0.3.2 (authored by jwb).
math/py-hmmlearn: Update to 0.3.2
Sat, Sep 14, 1:07 PM

Aug 7 2024

jwb committed R11:e57dda5999ac: sysutils/desktop-installer: Update to 1.0.0 (authored by jwb).
sysutils/desktop-installer: Update to 1.0.0
Aug 7 2024, 1:51 PM

Jul 27 2024

jwb committed R11:771236eb8e1a: biology/kallisto: Update to 0.51.0,1 (authored by jwb).
biology/kallisto: Update to 0.51.0,1
Jul 27 2024, 12:04 PM

Jul 25 2024

jwb committed R11:19eb57fb905e: biology/minimap2: Add NOT_FOR_ARCHS for most 32-bit processors (authored by jwb).
biology/minimap2: Add NOT_FOR_ARCHS for most 32-bit processors
Jul 25 2024, 1:09 PM

Jul 20 2024

jwb committed R11:f84c63104e8c: biology/minimap2: Add NOT_FOR_ARCHS for most 32-bit processors (authored by jwb).
biology/minimap2: Add NOT_FOR_ARCHS for most 32-bit processors
Jul 20 2024, 7:57 PM

Jul 14 2024

jwb committed R11:df8deb76eab2: x11/lumina-coreutils: More targeted WWW (authored by jwb).
x11/lumina-coreutils: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:74df0bf1f83e: x11/lumina: More targeted WWW (authored by jwb).
x11/lumina: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:e14463bc49db: x11/lumina-core: More targeted WWW (authored by jwb).
x11/lumina-core: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:9b29e4885b0f: deskutils/lumina-photo: More targeted WWW (authored by jwb).
deskutils/lumina-photo: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:3b1e379e62f1: deskutils/lumina-screenshot: More targeted WWW (authored by jwb).
deskutils/lumina-screenshot: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:b28e7f3818d5: deskutils/lumina-textedit: More targeted WWW (authored by jwb).
deskutils/lumina-textedit: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:d6b3c0a3b965: deskutils/lumina-mediaplayer: More targeted WWW (authored by jwb).
deskutils/lumina-mediaplayer: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:dbe68a5ffc58: deskutils/lumina-pdf: More targeted WWW (authored by jwb).
deskutils/lumina-pdf: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:31c068d1f320: deskutils/lumina-fileinfo: More targeted WWW (authored by jwb).
deskutils/lumina-fileinfo: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:1ae45003027e: deskutils/lumina-fm: More targeted WWW (authored by jwb).
deskutils/lumina-fm: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:b76f279e4759: deskutils/lumina-calculator: More targeted WWW (authored by jwb).
deskutils/lumina-calculator: More targeted WWW
Jul 14 2024, 8:38 PM
jwb committed R11:65df9e8360f7: deskutils/lumina-archiver: More targeted WWW (authored by jwb).
deskutils/lumina-archiver: More targeted WWW
Jul 14 2024, 8:38 PM

Jul 8 2024

jwb committed R11:be013acedc7d: biology/gcta: Unbreak fetch (authored by jwb).
biology/gcta: Unbreak fetch
Jul 8 2024, 11:58 PM
jwb committed R11:84a6e7ec36ea: biology/gcta: Unbreak fetch (authored by jwb).
biology/gcta: Unbreak fetch
Jul 8 2024, 10:05 PM

Jun 20 2024

jwb committed R11:1c73998d3240: deskutils/freebsd-update-notify: Update to 0.1.1.6 (authored by jwb).
deskutils/freebsd-update-notify: Update to 0.1.1.6
Jun 20 2024, 8:28 PM

Jun 3 2024

jwb committed R11:155267db532b: biology/py-pywgsim: Limit to python 3.10 (authored by jwb).
biology/py-pywgsim: Limit to python 3.10
Jun 3 2024, 11:43 AM
jwb committed R11:b8732315154d: biology/biostar-tools: Update to 1.11 (authored by jwb).
biology/biostar-tools: Update to 1.11
Jun 3 2024, 11:39 AM

May 28 2024

jwb committed R11:3bf602d2a7d0: biology/gcta: Unbreak build on 14.x aarch64 (authored by jwb).
biology/gcta: Unbreak build on 14.x aarch64
May 28 2024, 9:27 PM
jwb committed R11:b1e94269b6b8: biology/stacks: Unbreak build on aarch64 (authored by jwb).
biology/stacks: Unbreak build on aarch64
May 28 2024, 9:18 PM
jwb committed R11:859980f9d8c3: biology/minimap2: Unbreak build on aarch64 (authored by jwb).
biology/minimap2: Unbreak build on aarch64
May 28 2024, 9:07 PM

May 24 2024

jwb committed R11:4503f388135a: biology/bowtie2: Update to 2.5.4 (authored by jwb).
biology/bowtie2: Update to 2.5.4
May 24 2024, 11:34 AM

May 19 2024

jwb committed R11:f0bca8e2ac6a: biology/ad2vcf: Update to 0.1.6.19 (authored by jwb).
biology/ad2vcf: Update to 0.1.6.19
May 19 2024, 1:42 PM
jwb committed R11:93db8fd309bc: biology/biolibc: Update to 0.2.6.4 (authored by jwb).
biology/biolibc: Update to 0.2.6.4
May 19 2024, 1:40 PM
jwb committed R11:83ca8e890206: x11/lumina-core: Update to 1.6.2_10 (authored by jwb).
x11/lumina-core: Update to 1.6.2_10
May 19 2024, 1:39 PM

May 5 2024

jwb committed R11:94ae98221aa5: biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir (authored by jwb).
biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir
May 5 2024, 3:00 PM
jwb committed R11:5d736fc85e42: biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dir (authored by jwb).
biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dir
May 5 2024, 2:47 PM

May 1 2024

jwb committed R11:410ef5f336a5: sysutils/auto-admin: Update to 0.8.0.33 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.33
May 1 2024, 1:55 PM
jwb committed R11:28e6daedef5c: sysutils/auto-admin: Update to 0.8.0.33 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.33
May 1 2024, 1:54 PM
jwb committed R11:d43c48f14014: biology/vsearch: Update to 2.28.1 (authored by jwb).
biology/vsearch: Update to 2.28.1
May 1 2024, 1:41 PM

Apr 22 2024

jwb committed R11:1de14dfc3b4c: biology/wfa2-lib: Update to 2.3.5 (authored by jwb).
biology/wfa2-lib: Update to 2.3.5
Apr 22 2024, 12:42 PM
jwb committed R11:86c8816c2c85: biology/vcflib: Update to 1.0.10 (authored by jwb).
biology/vcflib: Update to 1.0.10
Apr 22 2024, 12:42 PM

Apr 18 2024

jwb committed R11:6308879ec20d: biology/py-macs3: Mark not for i386 (authored by jwb).
biology/py-macs3: Mark not for i386
Apr 18 2024, 11:04 PM

Apr 17 2024

jwb committed R11:507fa8ab3709: biology/minimap2: Fix man prefix (authored by jwb).
biology/minimap2: Fix man prefix
Apr 17 2024, 10:53 PM

Apr 10 2024

jwb committed R11:fa60f361e810: biology/py-dnaio: Release to ports@ (authored by jwb).
biology/py-dnaio: Release to ports@
Apr 10 2024, 11:43 PM
jwb committed R11:8efa6a228307: biology/minimap2: Update to 2.28 (authored by jwb).
biology/minimap2: Update to 2.28
Apr 10 2024, 12:29 PM

Apr 8 2024

jwb committed R11:3d100fcffcdb: biology/vsearch: Update to 2.27.1 (authored by jwb).
biology/vsearch: Update to 2.27.1
Apr 8 2024, 9:45 PM

Apr 6 2024

jwb committed R11:7045d13e4cdf: biology/py-cutadapt: Release to ports@ (authored by jwb).
biology/py-cutadapt: Release to ports@
Apr 6 2024, 12:12 AM
jwb committed R11:f86a4bf87948: biology/p5-TrimGalore: Release to ports@ (authored by jwb).
biology/p5-TrimGalore: Release to ports@
Apr 6 2024, 12:12 AM
jwb committed R11:2bce91331ff3: biology/trimmomatic: Release to ports@ (authored by jwb).
biology/trimmomatic: Release to ports@
Apr 6 2024, 12:12 AM
jwb committed R11:204123b152c7: archivers/py-xopen: Release to ports@ (authored by jwb).
archivers/py-xopen: Release to ports@
Apr 6 2024, 12:12 AM

Apr 2 2024

jwb committed R11:7b4311b4ff25: sysutils/auto-admin: Update to 0.8.0.27 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.27
Apr 2 2024, 1:28 PM

Mar 28 2024

jwb committed R11:6f7103ecbd94: sysutils/desktop-installer: Update to 0.8.3.9 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.3.9
Mar 28 2024, 11:27 AM

Mar 18 2024

jwb committed R11:5fdc72c4df0b: UIDs, GIDs: Claim ID 464 for LPJS (Lightweight, Portable Job Scheduler) (authored by jwb).
UIDs, GIDs: Claim ID 464 for LPJS (Lightweight, Portable Job Scheduler)
Mar 18 2024, 3:36 PM
jwb committed R11:719334cd8529: biology/bifrost: Update to 1.3.5 (authored by jwb).
biology/bifrost: Update to 1.3.5
Mar 18 2024, 2:31 PM

Mar 16 2024

jwb committed R11:43e4ca8d053f: py-cutadapt: Update to 4.7 (authored by jwb).
py-cutadapt: Update to 4.7
Mar 16 2024, 1:31 PM

Mar 13 2024

jwb committed R11:59bdd5ade746: biology/minimap2: Update to 2.27 (authored by jwb).
biology/minimap2: Update to 2.27
Mar 13 2024, 1:46 PM

Feb 28 2024

jwb committed R11:ddb11fbe9778: biology/py-macs3: Update to 3.0.1 (authored by jwb).
biology/py-macs3: Update to 3.0.1
Feb 28 2024, 1:29 PM

Feb 22 2024

jwb committed R11:b647ebf06211: sysutils/auto-admin: Update to 0.8.0.25 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0.25
Feb 22 2024, 1:21 AM

Feb 16 2024

jwb committed R11:306ace396259: biology/biostar-tools: Update to 1.10.1_3 (authored by jwb).
biology/biostar-tools: Update to 1.10.1_3
Feb 16 2024, 1:44 PM

Feb 7 2024

jwb committed R11:8b4861e65a3c: archivers/py-xopen: Update to 1.9.0_1 (authored by jwb).
archivers/py-xopen: Update to 1.9.0_1
Feb 7 2024, 2:01 PM

Feb 6 2024

jwb committed R11:6047d7c3fa34: security/globalprotect-openconnect: Release to ports@ (authored by jwb).
security/globalprotect-openconnect: Release to ports@
Feb 6 2024, 1:10 PM
jwb committed R11:7c280eb4247d: biology/py-cutadapt: Update to 4.6 (authored by jwb).
biology/py-cutadapt: Update to 4.6
Feb 6 2024, 12:57 PM
jwb committed R11:e35d3c95a0bd: biology/py-dnaio: Update to 1.2.0 (authored by jwb).
biology/py-dnaio: Update to 1.2.0
Feb 6 2024, 12:54 PM
jwb committed R11:4da9d2944b81: archivers/py-xopen: Update to 1.9.0 (authored by jwb).
archivers/py-xopen: Update to 1.9.0
Feb 6 2024, 12:51 PM

Jan 23 2024

jwb committed R11:c1fecdcb5649: biology/vsearch: Update to 2.27.0 (authored by jwb).
biology/vsearch: Update to 2.27.0
Jan 23 2024, 1:17 PM

Jan 18 2024

jwb committed R11:6bb47afdcc76: biology/bowtie2: Update to 2.5.3 (authored by jwb).
biology/bowtie2: Update to 2.5.3
Jan 18 2024, 11:21 PM

Jan 10 2024

jwb committed R11:999c86b25114: biology/atac-seq: Update to 0.2.0 (authored by jwb).
biology/atac-seq: Update to 0.2.0
Jan 10 2024, 4:06 PM
jwb committed R11:fabf2f6b2fbf: biology/py-macs3: Peak caller for TF binding sites (authored by jwb).
biology/py-macs3: Peak caller for TF binding sites
Jan 10 2024, 3:21 PM

Jan 5 2024

jwb committed R11:74265132881f: devel/py-joblib: Update to 1.3.2_1 (authored by jwb).
devel/py-joblib: Update to 1.3.2_1
Jan 5 2024, 4:52 PM

Dec 29 2023

jwb committed R11:bfb9d85323b9: math/py-hmmlearn: Unsupervised learning of Hidden Markov Models (authored by jwb).
math/py-hmmlearn: Unsupervised learning of Hidden Markov Models
Dec 29 2023, 4:19 PM

Dec 28 2023

jwb committed R11:c7abe68bc5bd: libxtend: Update function list man page (authored by jwb).
libxtend: Update function list man page
Dec 28 2023, 2:58 PM

Dec 16 2023

jwb committed R11:0f12812f16d4: biology/py-pybigwig: Update to 0.3.22 (authored by jwb).
biology/py-pybigwig: Update to 0.3.22
Dec 16 2023, 2:01 PM

Nov 26 2023

jwb committed R11:92927bbeb674: biology/vsearch: Update to 2.26.1 (authored by jwb).
biology/vsearch: Update to 2.26.1
Nov 26 2023, 12:33 PM

Nov 21 2023

jwb committed R11:d1bf49e31406: biology/bifrost: Update to 1.3.1 (authored by jwb).
biology/bifrost: Update to 1.3.1
Nov 21 2023, 12:58 PM

Nov 12 2023

jwb committed R11:aafea13ec8ab: biology/vsearch: Update to 2.25.0 (authored by jwb).
biology/vsearch: Update to 2.25.0
Nov 12 2023, 3:20 PM

Nov 8 2023

jwb committed R11:1e46f94e3f92: biology/bedtools: Update to 2.31.1 (authored by jwb).
biology/bedtools: Update to 2.31.1
Nov 8 2023, 4:43 PM

Nov 4 2023

jwb committed R11:ff7ea94e423a: biology/py-dna-features-viewer: Update to 3.1.3 (authored by jwb).
biology/py-dna-features-viewer: Update to 3.1.3
Nov 4 2023, 10:13 PM
jwb committed R11:8a2deaeb09da: biology/kallisto: Update to 0.50.1,1 (authored by jwb).
biology/kallisto: Update to 0.50.1,1
Nov 4 2023, 1:15 PM

Oct 29 2023

jwb committed R11:91d1591465a6: biology/biolibc-tools: Update to 0.1.4.13 (authored by jwb).
biology/biolibc-tools: Update to 0.1.4.13
Oct 29 2023, 10:42 PM
jwb committed R11:19a5683913a5: sysutils/runas: Update to 0.2.0 (authored by jwb).
sysutils/runas: Update to 0.2.0
Oct 29 2023, 11:44 AM

Oct 28 2023

jwb committed R11:de9aab9eed6c: math/basic-stats: Update to 0.1.2.8 (authored by jwb).
math/basic-stats: Update to 0.1.2.8
Oct 28 2023, 11:53 AM
jwb committed R11:3650db790aab: sysutils/npmount: Update to 0.1.1.3 (authored by jwb).
sysutils/npmount: Update to 0.1.1.3
Oct 28 2023, 11:53 AM
jwb committed R11:87c04c6960c1: biology/vcf2hap: Update to 0.1.6.7 (authored by jwb).
biology/vcf2hap: Update to 0.1.6.7
Oct 28 2023, 11:53 AM
jwb committed R11:3d57604a3c69: deskutils/qmediamanager: Update to 0.1.1.2 (authored by jwb).
deskutils/qmediamanager: Update to 0.1.1.2
Oct 28 2023, 11:53 AM
jwb committed R11:1d29500ebc10: biology/vcf-split: Update to 0.1.5.10 (authored by jwb).
biology/vcf-split: Update to 0.1.5.10
Oct 28 2023, 11:53 AM
jwb committed R11:d6b521a45588: biology/peak-classifier: Update to 0.1.4.13 (authored by jwb).
biology/peak-classifier: Update to 0.1.4.13
Oct 28 2023, 11:53 AM
jwb committed R11:b95124399e62: biology/fastq-trim: Update to 0.1.3 (authored by jwb).
biology/fastq-trim: Update to 0.1.3
Oct 28 2023, 11:53 AM
jwb committed R11:f20fa89b2c52: biology/fasda: Update to 0.1.5 (authored by jwb).
biology/fasda: Update to 0.1.5
Oct 28 2023, 11:53 AM
jwb committed R11:560a0d850d4d: biology/biolibc: Update to 0.2.6 (authored by jwb).
biology/biolibc: Update to 0.2.6
Oct 28 2023, 11:53 AM
jwb committed R11:5f2cbc8acfbc: devel/libxtend: Update to 0.2.0 (authored by jwb).
devel/libxtend: Update to 0.2.0
Oct 28 2023, 11:53 AM

Oct 27 2023

jwb committed R11:f71a4e840eae: biology/vsearch: Update to 2.24.0 (authored by jwb).
biology/vsearch: Update to 2.24.0
Oct 27 2023, 2:12 PM

Oct 23 2023

jwb committed R11:0d01cb8f261c: sysutils/linux-miniconda-installer: Add ONLY_FOR_ARCHS_REASON (authored by jwb).
sysutils/linux-miniconda-installer: Add ONLY_FOR_ARCHS_REASON
Oct 23 2023, 11:29 AM
jwb committed R11:238caeecc21b: sysutils/spcm: Update to 0.5.8 (authored by jwb).
sysutils/spcm: Update to 0.5.8
Oct 23 2023, 11:22 AM
jwb committed R11:071f3a16c9d6: sysutils/desktop-installer: Update to 0.8.3 (authored by jwb).
sysutils/desktop-installer: Update to 0.8.3
Oct 23 2023, 11:21 AM
jwb committed R11:01c8e583c927: deskutils/freebsd-update-notify: Bump auto-admin dep version (authored by jwb).
deskutils/freebsd-update-notify: Bump auto-admin dep version
Oct 23 2023, 11:21 AM
jwb committed R11:a953b4d94414: sysutils/auto-admin: Update to 0.8.0 (authored by jwb).
sysutils/auto-admin: Update to 0.8.0
Oct 23 2023, 11:21 AM

Oct 19 2023

jwb committed R11:afd17c07b8b2: x11/lumina-core: Fix new window resize issue (authored by jwb).
x11/lumina-core: Fix new window resize issue
Oct 19 2023, 12:50 PM

Oct 18 2023

jwb committed R11:fee1d76936f6: biology/bowtie2: Update to 2.5.2 (authored by jwb).
biology/bowtie2: Update to 2.5.2
Oct 18 2023, 12:27 PM

Oct 15 2023

jwb committed R11:f95880107ae1: biology/gcta: Add temporary hack for building on aarch64 (authored by jwb).
biology/gcta: Add temporary hack for building on aarch64
Oct 15 2023, 11:49 AM

Oct 14 2023

jwb committed R11:9d8c5cb3ebf2: biology/gcta: Update to 1.94.1 (authored by jwb).
biology/gcta: Update to 1.94.1
Oct 14 2023, 12:59 PM

Oct 11 2023

jwb committed R11:2650106a619a: biology/bifrost: Update to 1.3.0 (authored by jwb).
biology/bifrost: Update to 1.3.0
Oct 11 2023, 12:32 PM

Oct 7 2023

jwb committed R11:726aa668267c: devel/R-cran-getopt: Update to 1.20.4 (authored by jwb).
devel/R-cran-getopt: Update to 1.20.4
Oct 7 2023, 1:33 PM

Sep 29 2023

jwb committed R11:f3576d9ad821: biology/wfa2-lib: Update to 2.3.4 (authored by jwb).
biology/wfa2-lib: Update to 2.3.4
Sep 29 2023, 6:26 PM