Systems manager and facilitator for Research Computing at the University of Wisconsin -- Milwaukee
User Details
User Details
- User Since
- Nov 27 2017, 4:37 PM (177 w, 3 d)
Wed, Apr 21
Wed, Apr 21
biology/py-crossmap: Update to 0.5.4
Mon, Apr 19
Mon, Apr 19
jwb committed R11:3bc87a0f1a1b: biology/snpeff: Improvements to Makefile and patches (authored by jwb).
biology/snpeff: Improvements to Makefile and patches
Sun, Apr 18
Sun, Apr 18
jwb committed R11:5164d38ee538: biology/snpeff: Genetic variant annotation and effect prediction toolbox (authored by jwb).
biology/snpeff: Genetic variant annotation and effect prediction toolbox
jwb committed R11:15458dfbacb8: biology/bbmap: BBMap short read aligner, and other bioinformatic tools (authored by jwb).
biology/bbmap: BBMap short read aligner, and other bioinformatic tools
biology/bowtie2: Add support for powerpc64le
jwb committed R11:1b6e8568ce41: biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint (authored by jwb).
biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint
jwb committed R11:49a1ada63293: biology/readseq: Read and reformat biosequences, Java command-line version (authored by jwb).
biology/readseq: Read and reformat biosequences, Java command-line version
Fri, Apr 16
Fri, Apr 16
jwb committed R11:ed41b3295ccf: sysutils/linux-miniconda-installer: Aid for installing and using miniconda (authored by jwb).
sysutils/linux-miniconda-installer: Aid for installing and using miniconda
jwb committed R11:def843401834: sysutils/desktop-installer: Fix accidentally silenced user prompt (authored by jwb).
sysutils/desktop-installer: Fix accidentally silenced user prompt
jwb committed R11:0e084ddc8634: sysutils/desktop-installer: Fix accidentally silenced user prompt (authored by jwb).
sysutils/desktop-installer: Fix accidentally silenced user prompt
Tue, Apr 13
Tue, Apr 13
biology/mothur: Update to 1.45.2
Mon, Apr 12
Mon, Apr 12
jwb committed R11:912872756265: biology/py-crossmap: Lift over genomics coordinates between assemblies (authored by jwb).
biology/py-crossmap: Lift over genomics coordinates between assemblies
jwb committed R11:dfcece22a2cb: biology/py-bigwig: Python access to bigWig files using libBigWig (authored by jwb).
biology/py-bigwig: Python access to bigWig files using libBigWig
Tue, Mar 30
Tue, Mar 30
jwb committed rP569561: biology/subread: Update to 2.0.2.
biology/subread: Update to 2.0.2
Fri, Mar 26
Fri, Mar 26
sysutils/auto-admin: Update to 0.7.1.2
Wed, Mar 24
Wed, Mar 24
jwb committed rP569151: biology/vsearch: Update to 2.16.0.
biology/vsearch: Update to 2.16.0
Mar 23 2021
Mar 23 2021
biology/vcf2hap: Generate .hap file from VCF for haplohseq
biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF file
Mar 21 2021
Mar 21 2021
biology/vcf-split: Split a multi-sample VCF into single-sample VCFs
biology/biolibc: Low-level high-performance bioinformatics library
Mar 20 2021
Mar 20 2021
jwb committed rP568874: biology/htslib: Update to 1.12.
biology/htslib: Update to 1.12
jwb committed rP568867: biology/generand: Update to 0.1.2.
biology/generand: Update to 0.1.2
jwb committed rP568866: biology/py-multiqc: Update to 1.10.
biology/py-multiqc: Update to 1.10
Mar 15 2021
Mar 15 2021
jwb committed rP568501: biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format.
biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format
jwb committed rP568497: sysutils/spcm: Update to 0.5.4.
sysutils/spcm: Update to 0.5.4
sysutils/desktop-installer: Update to 0.7.1
sysutils/auto-admin: Update to 0.7.1
Mar 6 2021
Mar 6 2021
Mar 3 2021
Mar 3 2021
sysutils/slurm-wlm: More precise hdf5 dependency
Feb 25 2021
Feb 25 2021
jwb committed rP566566: auto-admin: Update to 0.7.0.9.
auto-admin: Update to 0.7.0.9
Feb 14 2021
Feb 14 2021
lang/pocl: Reverse broken RUN_DEPENDS change from last commit
sysutils/auto-admin: Update to 0.7.0.3
lang/pocl: Update hwloc dependency to hwloc2
Feb 7 2021
Feb 7 2021
jwb committed rP564637: sysutils/spcm: Update to 0.5.3.
sysutils/spcm: Update to 0.5.3
sysutils/desktop-installer: Update to 0.7.0
sysutils/auto-admin: Update to 0.7.0
Feb 5 2021
Feb 5 2021
jwb committed rP564072: biology/py-multiqc: Update to 1.9.
biology/py-multiqc: Update to 1.9
Feb 4 2021
Feb 4 2021
jwb committed rP564040: biology/fastqc: Update to 0.11.9.
biology/fastqc: Update to 0.11.9
Feb 2 2021
Feb 2 2021
jwb committed rP563844: biology/py-cutadapt: Update to 3.2.
biology/py-cutadapt: Update to 3.2
Jan 30 2021
Jan 30 2021
biology/bowtie2: Reverse switch to devel/onetbb
biology/bowtie2: Switch to devel/onetbb
jwb committed rP563418: biology/vsearch: Update to 2.15.2.
biology/vsearch: Update to 2.15.2
Jan 29 2021
Jan 29 2021
jwb committed rP563261: sysutils/spcm: Update to 0.5.2.
sysutils/spcm: Update to 0.5.2
sysutils/auto-admin: Update to 0.6.12
Jan 26 2021
Jan 26 2021
sysutils/slurm-wlm: Patch to work with hdf5 1.12
biology/kallisto: Add -lz for pending hdf5 upgrade
Jan 24 2021
Jan 24 2021
jwb committed rP562501: biology/bedtools: Upgrade to 2.30.0.
biology/bedtools: Upgrade to 2.30.0
Jan 23 2021
Jan 23 2021
biology/haplohseq: Fix example scripts for python 3
Jan 22 2021
Jan 22 2021
biology/bedtools: License changed upstream
Jan 15 2021
Jan 15 2021
biology/haplohseq: Restrict to python3
Jan 14 2021
Jan 14 2021
biology/haplohseq: Resurrect and fix python2 dependency
Jan 13 2021
Jan 13 2021
jwb committed rP561514: sysutils/spcm: Update to 0.5.1.1.
sysutils/spcm: Update to 0.5.1.1
sysutils/desktop-installer: Update to 0.6.20.3
sysutils/auto-admin: Update to 0.6.11.4
jwb committed rP561488: sysutils/spcm: Update to 0.5.1.
sysutils/spcm: Update to 0.5.1
Jan 11 2021
Jan 11 2021
math/mprime: Switch from hwloc to hwloc2
biology/star: Drop dependency on gcc
sysutils/parafly: Upgrade to 0.1.0 from Github, drop gcc dependency
biology/ncbi-blast+: Drop dependency on gcc
biology/stacks: Drop dependency on gcc
biology/gcta: Drop dependency on gcc
biology/fasttree: Drop dependency on gcc
biology/cd-hit: Drop dependency on gcc
biology/canu: Drop dependency on gcc
Jan 8 2021
Jan 8 2021
jwb committed rP560817: biology/pooler: Upgrade to 1.76.
biology/pooler: Upgrade to 1.76
net/aluminum: Upgrade hwloc dep to hwloc2
science/gromacs: Upgrade hwloc dep to hwloc2
devel/hpx: Upgrade hwloc dep to hwloc2
Jan 7 2021
Jan 7 2021
sysutils/slurm-wlm: Switch from hwloc to hwloc2
Jan 6 2021
Jan 6 2021
sysutils/desktop-installer: Update to 0.6.20
sysutils/spcm: Tools for building and managing HPC clusters
sysutils/auto-admin: Update to 0.6.11
Jan 2 2021
Jan 2 2021
jwb committed rP559975: biology/gemma: Upgrade to 0.98.3.
biology/gemma: Upgrade to 0.98.3
Dec 27 2020
Dec 27 2020
sysutils/desktop-installer: Update to 0.6.19
sysutils/auto-admin: Update to 0.6.10
Dec 17 2020
Dec 17 2020
sysutils/auto-admin: Upgrade to 0.6.9
Dec 9 2020
Dec 9 2020
Dec 8 2020
Dec 8 2020
sysutils/slurm-wlm: Back out -fno-common patches, add -fcommon flag
Dec 1 2020
Dec 1 2020
sysutils/slurm-wlm: Patch in lua 5.4 support
Nov 16 2020
Nov 16 2020
biology/ncbi-blast+: Upgrade to 2.11.0
Nov 15 2020
Nov 15 2020
biology/pooler: Optimise DNA sequencing primer-set combinations
Nov 9 2020
Nov 9 2020
biology/vt: Fix build with htslib 1.11
Nov 8 2020
Nov 8 2020
biology/gcta: Switch eigen3 dep to USES framework
Nov 7 2020
Nov 7 2020
jwb committed rP554390: biology/bowtie2: Upgrade to 2.4.2.
biology/bowtie2: Upgrade to 2.4.2
Nov 5 2020
Nov 5 2020
jwb committed rP554157: biology/bcftools: Upgrade to 1.11.
biology/bcftools: Upgrade to 1.11
jwb committed rP554156: biology/samtools: Upgrade to 1.11.
biology/samtools: Upgrade to 1.11
jwb committed rP554155: biology/htslib: Upgrade to 1.11.0.
biology/htslib: Upgrade to 1.11.0
Nov 3 2020
Nov 3 2020
jwb committed rP554012: devel/py-srsly: Upgrade to 2.3.1.
devel/py-srsly: Upgrade to 2.3.1
Oct 30 2020
Oct 30 2020
sysutils/desktop-installer: Upgrade to 0.6.18
sysutils/auto-admin: Upgrade to 0.6.8
Oct 16 2020
Oct 16 2020
biology/py-biopython: Upgrade to 1.78
Oct 1 2020
Oct 1 2020
sysutils/ganglia-monitor-core: Upgrade to 3.7.2, disable python modules
Sep 22 2020
Sep 22 2020
jwb committed rP549546: biology/gmap: Upgrade to 2020.09.12.
biology/gmap: Upgrade to 2020.09.12
Sep 18 2020
Sep 18 2020
biology/subread: Add -fcommon for clang 11
Sep 14 2020
Sep 14 2020
jwb committed rP548685: biology/canu: Upgrade to 2.1.
biology/canu: Upgrade to 2.1
Aug 30 2020
Aug 30 2020
biology/picard-tools: Remove extraneous file
Aug 11 2020
Aug 11 2020
sysutils/auto-admin: Upgrade to 0.6.7 bugfix release
Aug 3 2020
Aug 3 2020
jwb committed rP544098: biology/samtools: Upgrade to 1.10.
biology/samtools: Upgrade to 1.10
jwb committed rP544096: biology/bcftools: Upgrade to 1.10.2.
biology/bcftools: Upgrade to 1.10.2