Diffusion FreeBSD ports repository 0f2f80ca3833

biology/sra-tools: Update to 3.0.6
0f2f80ca3833
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Description

biology/sra-tools: Update to 3.0.6

Major code and build system rework since 2.11
Now supports aarch64, unblocking rna-seq and atac-seq metaports
Changes: https://github.com/ncbi/sra-tools/commits/master

biology/sra-tools: Update to 3.0.60f2f80ca3833Actions

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Changes (69)

R11:0f2f80ca3833

biology/sra-tools/Makefile

biology/sra-tools/distinfo

biology/sra-tools/files/Makefile.bsd

biology/sra-tools/files/byteswap.h

biology/sra-tools/files/endian.h

biology/sra-tools/files/ld.bsd.clang.sh

biology/sra-tools/files/ld.bsd.cmn.sh

biology/sra-tools/files/ld.bsd.dlib.sh

biology/sra-tools/files/ld.bsd.exe.sh

biology/sra-tools/files/ld.bsd.gcc.sh

biology/sra-tools/files/ld.bsd.ln.sh

biology/sra-tools/files/ld.bsd.slib.sh

biology/sra-tools/files/os-native.h

biology/sra-tools/files/patch-CMakeLists.txt

biology/sra-tools/files/patch-build_env.cmake

biology/sra-tools/files/patch-build_ld.linux.exe.sh

biology/sra-tools/files/patch-hdf5

biology/sra-tools/files/patch-libs_ascp_CMakeLists.txt

biology/sra-tools/files/patch-libs_general-writer_general-writer.cpp

biology/sra-tools/files/patch-ncbi-vdb_build_Makefile.clang

biology/sra-tools/files/patch-ncbi-vdb_build_Makefile.env

biology/sra-tools/files/patch-ncbi-vdb_build_Makefile.gcc

biology/sra-tools/files/patch-ncbi-vdb_build_Makefile.install

biology/sra-tools/files/patch-ncbi-vdb_build_Makefile.shell

biology/sra-tools/files/patch-ncbi-vdb_build_env.cmake

biology/sra-tools/files/patch-ncbi-vdb_interfaces_os_sun_atomic32.h

biology/sra-tools/files/patch-ncbi-vdb_libs_align_samextract-lib.cpp

biology/sra-tools/files/patch-ncbi-vdb_libs_ext_Makefile

biology/sra-tools/files/patch-ncbi-vdb_libs_kapp_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_kapp_mac_ram.c

biology/sra-tools/files/patch-ncbi-vdb_libs_kfc_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_kfg_config.c

biology/sra-tools/files/patch-ncbi-vdb_libs_kfs_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_kfs_unix_sysdir.c

biology/sra-tools/files/patch-ncbi-vdb_libs_klib_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_klib_hashfile.c

biology/sra-tools/files/patch-ncbi-vdb_libs_klib_unix_systime.c

biology/sra-tools/files/patch-ncbi-vdb_libs_kns_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_kns_manager.c

biology/sra-tools/files/patch-ncbi-vdb_libs_kns_unix_syssock.c

biology/sra-tools/files/patch-ncbi-vdb_libs_kproc_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_ktst_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_libs_ncbi-vdb_Makefile

biology/sra-tools/files/patch-ncbi-vdb_libs_search_Makefile

biology/sra-tools/files/patch-ncbi-vdb_libs_vfs_CMakeLists.txt

biology/sra-tools/files/patch-ncbi-vdb_setup_konfigure.perl

biology/sra-tools/files/patch-ncbi-vdb_setup_os-arch.prl

biology/sra-tools/files/patch-ncbi-vdb_test_kfg_kfgtest.cpp

biology/sra-tools/files/patch-ncbi-vdb_test_klib_printf-test.c

biology/sra-tools/files/patch-ncbi-vdb_test_kns_Makefile

biology/sra-tools/files/patch-ncbi-vdb_test_vdb_test-dependencies.cpp

biology/sra-tools/files/patch-ncbi-vdb_test_vdb_test-dependencies__dflt.cpp

biology/sra-tools/files/patch-ncbi-vdb_test_vfs_redirect-rejected-names-cgi-http-to-https.cpp

biology/sra-tools/files/patch-setup_install.perl

biology/sra-tools/files/patch-setup_konfigure.perl

biology/sra-tools/files/patch-tools_bam-loader_loader-imp.c

biology/sra-tools/files/patch-tools_copycat_Makefile

biology/sra-tools/files/patch-tools_driver-tool_Makefile

biology/sra-tools/files/patch-tools_driver-tool_cmdline.cpp

biology/sra-tools/files/patch-tools_driver-tool_utf8proc_Makefile

biology/sra-tools/files/patch-tools_external_driver-tool_file-path.posix.cpp

biology/sra-tools/files/patch-tools_external_driver-tool_sratools.cpp

biology/sra-tools/files/patch-tools_external_vdb-config_tui_CMakeLists.txt

biology/sra-tools/files/patch-tools_fastq-loader_spot-assembler.c

biology/sra-tools/files/patch-tools_loaders_fastq-loader_spot-assembler.c

biology/sra-tools/files/patch-tools_sra-sort_Makefile

biology/sra-tools/files/patch-tools_util_validate-names4.c

biology/sra-tools/pkg-descr

biology/sra-tools/pkg-plist

biology/sra-tools: Update to 3.0.6
0f2f80ca3833
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