Recent changes have renovated the build system, update to reflect those
changes. The changes specifically noted are:
- dc7b79a328f (.ORDER for some parallel safety)
- 127d3f2965d (generate went away, run is no longer the default)
- 7da17aa0103 (top-level Makefile to drive both builds)
The Makefiles have been resynced, slight adjustments to text.