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[new port] biology/canu: Single molecule sequence assembler
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Authored by jwb on Dec 21 2017, 4:53 PM.

Details

Summary

[new port] biology/canu: Single molecule sequence assembler
Approved by: jrm (mentor) or wen (mentor)
Differential to be added to log

Upstream has already patched head to conform to filesystem hierarchy standards, so the post-build hacks will go away in 1.7.

Test Plan

portlint -C and stage-qa clean
Poudriere tested on {10.3,11.1}-{amd64,i386}

User-tested by researchers

Diff Detail

Repository
rP FreeBSD ports repository
Lint
Automatic diff as part of commit; lint not applicable.
Unit
Automatic diff as part of commit; unit tests not applicable.

Event Timeline

jrm added inline comments.
biology/canu/Makefile
4 ↗(On Diff #36868)

missing tab?

This revision is now accepted and ready to land.Dec 22 2017, 12:13 AM

Added that to my checklist

This revision now requires review to proceed.Dec 22 2017, 1:27 AM
This revision is now accepted and ready to land.Dec 22 2017, 1:29 AM
This revision was automatically updated to reflect the committed changes.
head/biology/canu/Makefile
14–15

Why += ?

head/biology/canu/pkg-plist
54–55 ↗(On Diff #36898)

installing only static libraries seems like a bad idea.

Good catch on the +=, that was an oversight.

The upstream build system does not support shared libs and it's a nightmare
to patch. The developers are receptive to suggestion, though. I plan to
open an issue asking for shared libs in a future release.

This revision is now accepted and ready to land.Dec 22 2017, 1:47 PM
This revision was automatically updated to reflect the committed changes.