biology/fasttree: update to version 2.1.9
Changes in version 2.1.9:
Uses Le-Gascuel 2008 model instead of (default) Jones-Taylor-Thorton 1992 model
Differential D8187
biology/fasttree: update to version 2.1.9 jwb on Oct 7 2016, 8:02 PM. Authored by Tags None Referenced Files
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biology/fasttree: update to version 2.1.9 Changes in version 2.1.9: Uses Le-Gascuel 2008 model instead of (default) Jones-Taylor-Thorton 1992 model portlint -AC: Ok
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Comment Actions I am waiting before committing this because I am seeing frequent core dumps. The problem, however, is not new to this version. Comment Actions I don't think we have anyone using fasttree presently, but if you send me a test case that produces the core dump, I'll try and reproduce it. Comment Actions We are not using FastTree either, so maybe I'm doing something stupid.
Comment Actions Fix core dump issue. Code was assuming malloc() aligns to 16 byte boundaries. May be a Linuxism. Also removed the forced -O3 as I've never seen it make a measurable difference in performance.
Comment Actions Thanks, I hadn't given it a full review since commandeering... The Makefile itself is a dependency for FastTree (so a rebuild happens if Makefile is altered, useful outside ports during development), so it has to be in ${WRKSRC}, or I'd have to pass more args or env from the port Makefile. |