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biology/cd-hit: update to bug-fix release 4.6.6
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Authored by jrm on Oct 7 2016, 7:48 PM.
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Details

Summary

biology/cd-hit: update to bug-fix release 4.6.6

Changes in version 4.6.6:
Bug fix for cd-hit-dup in variable length input when write out R1 reads

Changes in version 4.6.5:
Add filter for -aL option so that short sequences will be skipped if not satisfy
representative sequences' -aL requirement. This will make compute faster in
clustering settings where sequences in the same cluster are required to have
similar length using -aL -AL option (e.g. -aL 0.9).

Test Plan

portlint -AC: OK
testport: OK (poudriere: 9.3-RELEASE-p45, i386)
testport: OK (poudriere: 9.3-RELEASE-p45, amd64)
testport: OK (poudriere: 10.3-RELEASE-p7, i386)
testport: OK (poudriere: 10.3-RELEASE-p7, amd64
testport: OK (poudriere: 11.0-RC3, i386)
testport: OK (poudriere: 11.0-RC3, amd64)

Diff Detail

Repository
rP FreeBSD ports repository
Lint
No Lint Coverage
Unit
No Test Coverage
Build Status
Buildable 5567
Build 5811: arc lint + arc unit

Event Timeline

jrm retitled this revision from to biology/cd-hit: update to bug-fix release 4.6.6.
jrm updated this object.
jrm edited the test plan for this revision. (Show Details)
jrm added reviewers: swills, AMDmi3.
AMDmi3 edited edge metadata.

s/post-stage/post-install/, otherwise LGTM

This revision is now accepted and ready to land.Oct 9 2016, 10:50 PM
biology/cd-hit/Makefile
33

This should be post-install.

jrm edited edge metadata.

Use post-install instead of post-stage for stripping

This revision now requires review to proceed.Oct 12 2016, 7:47 PM
swills edited edge metadata.

Approved

This revision is now accepted and ready to land.Oct 12 2016, 9:13 PM
jrm edited edge metadata.
jrm marked an inline comment as done.

Update to chase mat's commit that made the same change to use post-install
instead of post-stage.

This revision now requires review to proceed.Dec 18 2016, 3:52 PM
biology/cd-hit/Makefile
19

This is not needed.

jrm edited edge metadata.

Remove PORTREVISION and WRKSRC definitions.

swills edited edge metadata.

Approved

This revision is now accepted and ready to land.Dec 20 2016, 4:34 PM
This revision was automatically updated to reflect the committed changes.
jrm marked an inline comment as done.