Replace dot-dot relative pathing with SRCTOP-relative paths where possible

This reduces build output, need for recalculating paths, and makes it clearer
which paths are relative to what areas in the source tree. The change in
performance over a locally mounted UFS filesystem was negligible in my testing,
but this may more positively impact other filesystems like NFS.

LIBC_SRCTOP was left alone so Juniper (and other users) can continue to
manipulate lib/libc/Makefile (and other Makefile.inc's under lib/libc) as
include Makefiles with custom options.

Discussed with: marcel, sjg
MFC after: 1 week
Reviewed by: emaste
Sponsored by: Dell EMC Isilon
Differential Revision: https://reviews.freebsd.org/D9207