biology/paml: update to version 4.9c and various improvements
rP422846
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Description

biology/paml: update to version 4.9c and various improvements

Update to version 4.9c
Set LICENSE=GPLv3
Use the variable PORTDOCS to automate the generation of the DOCS plist (as suggested by mat@).
Install dat/ examples/ and Technical/ directories as well as files in the root directory of the distribution tarball.
Fix broken permissions.
Delete Windows executables.
Build and install useful binaries not built by upstream's Makefile.
Update pkg-descr.

Reviewed by: swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8040