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biology/diamond: Update to version 0.8.31
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Authored by jrm on Jan 11 2017, 1:12 PM.
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Details

Summary

biology/diamond: Update to version 0.8.31.

Upstream changes:

  • Added compositional score adjustments (option --comp-based-stats (0,1)). This is a useful feature for filtering false positive hits and is enabled by default.
  • Removed --single-domain option and replaced by --max-hsps, to set the maximum number of Hsps per query/subject pair, to be consistent with BLAST. This option is set to 1 by default as getting more than 1 Hsp per subject seems to be confusing users.
  • Added option --no-self-hits to filter identical self-hits.
Test Plan

portlint -C: OK
testport: OK (poudriere: 10.3-RELEASE-p10, amd64)
testport: OK (poudriere: 11.0-RELEASE-p1, amd64)

Diff Detail

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Event Timeline

jrm retitled this revision from to biology/diamond: Update to version 0.8.31.
jrm updated this object.
jrm edited the test plan for this revision. (Show Details)
jrm added reviewers: swills, AMDmi3.
AMDmi3 edited edge metadata.
This revision is now accepted and ready to land.Jan 12 2017, 11:20 AM
This revision was automatically updated to reflect the committed changes.