biology/unanimity: Pacific Biosciences consensus library and applications
Approved by jrm (mentor) or wen (mentor)
Differential to be added to commit message
Upstream does not appear to support shared libs at this point.
Details
Details
portlint -AC: looks fine
Passed poudriere on {10.4,11.1}-{amd64,i386}
Tested in production
Diff Detail
Diff Detail
- Repository
- rP FreeBSD ports repository
- Lint
Lint Not Applicable - Unit
Tests Not Applicable
Event Timeline
| biology/unanimity/Makefile | ||
|---|---|---|
| 14–16 ↗ | (On Diff #41771) | I wasn't aware that the comparison sign could be anything other than '>=' or '>'. Could you confirm this does what we expect? If this does work, it could be quite useful. |
Comment Actions
Yep, 'been using this for years, at least in my wip ports. Very handy for persnickety genomics ports.
<<<ROOT@cray.acadix>>> /usr/ports/wip/unanimity 1003 # make clean depends
> Cleaning for unanimity-g20180307
> unanimity-g20180307 depends on file: /usr/local/sbin/pkg - found
> unanimity-g20180307 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so)
> unanimity-g20180307 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so)
> unanimity-g20180307 depends on package: pbseqan==g20171002 - found
> unanimity-g20180307 depends on package: pbbam==g20180416 - found
> unanimity-g20180307 depends on package: pbcopper==g20180413 - found
> unanimity-g20180307 depends on file: /usr/local/bin/cmake - found
> unanimity-g20180307 depends on executable: ninja - found
> unanimity-g20180307 depends on package: pkgconf>=1.3.0_1 - found
> unanimity-g20180307 depends on file: /usr/local/bin/python2.7 - found
> unanimity-g20180307 depends on file: /usr/local/bin/python2.7 - found
[ change pbcopper version ]
<<<ROOT@cray.acadix>>> /usr/ports/wip/unanimity 1005 # make clean depends
> Cleaning for unanimity-g20180307
> unanimity-g20180307 depends on file: /usr/local/sbin/pkg - found
> unanimity-g20180307 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so)
> unanimity-g20180307 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so)
> unanimity-g20180307 depends on package: pbseqan==g20171002 - found
> unanimity-g20180307 depends on package: pbbam==g20180416 - found
> unanimity-g20180307 depends on package: pbcopper==g20180414 - not found
> License BSD3CLAUSE accepted by the user
> pbcopper-g20180413 depends on file: /usr/local/sbin/pkg - found
Same for g20180412.