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biology/bedtools: Upgrade to 2.27.1

Authored by jwb on Apr 19 2018, 3:51 PM.



biology/bedtools: Upgrade to 2.27.1
Approved by jrm (mentor) or wen (mentor)
Differential to be added to commit message

Test Plan

portlint -AC: looks fine
Passed poudriere on {10.3,11.1}-{amd64,i386}
Tested in production

Diff Detail

rP FreeBSD ports repository
Automatic diff as part of commit; lint not applicable.
Automatic diff as part of commit; unit tests not applicable.

Event Timeline

jwb created this revision.Apr 19 2018, 3:51 PM
jrm added a comment.Apr 19 2018, 4:18 PM

Lgtm. The only possible warning flag for me is the removal of MAKE_JOBS_UNSAFE=yes. Issues related to parallel building can crop up randomly. Do you know why it was originally added and are you confident that it is no longer an issue?

jwb updated this revision to Diff 41658.Apr 19 2018, 4:22 PM

I don't know why it was added originally, but I've built the new version
at least a dozen times without it and run it through poudriere testport
twice on all platforms, so I'm pretty confident.

jrm accepted this revision.Apr 19 2018, 4:29 PM

Sounds good. It's on the record here, so you will have a first guess if you get build error emails from clusteradm. When the package is built under heavier load on the cluster, these parallel build issues seem to occur more often.

This revision is now accepted and ready to land.Apr 19 2018, 4:29 PM
This revision was automatically updated to reflect the committed changes.