Differential D15072

biology/smithwaterman: Smith-waterman-gotoh alignment algorithm
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Authored by jwb on Apr 15 2018, 5:25 AM.

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Reviewers

jrm
wen

Commits

rP467402: biology/smithwaterman: Smith-waterman-gotoh alignment algorithm

Summary

biology/smithwaterman: Smith-waterman-gotoh alignment algorithm
Approved by jrm (mentor) or wen (mentor)
Differential to be added to commit message

Test Plan

portlint -AC: looks fine
Passed poudriere on {10.3,11.1}-{amd64,i386}
Tested in production

Diff Detail

Repository

rP FreeBSD ports repository

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Unit

Tests Not Applicable

Event Timeline

jwb created this revision.Apr 15 2018, 5:25 AM

Herald added a subscriber: mat. · View Herald TranscriptApr 15 2018, 5:25 AM

Harbormaster completed remote builds in B16141: Diff 41477.Apr 15 2018, 5:25 AM

jrm added inline comments.Apr 15 2018, 6:17 AM

biology/smithwaterman/Makefile
4 ↗	(On Diff #41477)	Since this is not an upstream version, I think we want PORTVERSION here. Have a look at 'Example 5.9. Exotic Case 2' in the PH.
14 ↗	(On Diff #41477)	Single block 'USES and USE_x' block? USES= gmake USE_GITHUB= yes GH_ACCOUNT= ekg GH_TAGNAME= 2610e259611ae4cde8f03c72499d28f03f6d38a7 USE_LDCONFIG= yes

I was actually following Example 5.13 on the DISTVERSION.

Attribute the blank line to dain bramage.

Thanks.

Harbormaster completed remote builds in B16142: Diff 41480.Apr 15 2018, 11:43 AM

jrm accepted this revision.Apr 15 2018, 11:48 AM

This revision is now accepted and ready to land.Apr 15 2018, 11:48 AM

Closed by commit rP467402: biology/smithwaterman: Smith-waterman-gotoh alignment algorithm (authored by jwb). · Explain WhyApr 15 2018, 5:46 PM

This revision was automatically updated to reflect the committed changes.

Revision Contents
Changeset List

Path

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head/

biology/

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smithwaterman/

25 lines

3 lines

files/

100 lines

8 lines

12 lines

Diff 41490

head/biology/Makefile

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head/biology/smithwaterman/Makefile

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head/biology/smithwaterman/distinfo

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head/biology/smithwaterman/files/Makefile

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head/biology/smithwaterman/pkg-descr

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head/biology/smithwaterman/pkg-plist

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