r460809 started installing .pyi with the %%PYTHON3%% substituion in the plists. Support for .pyi files was added in Python 3.5, and PyQt's configure.py only installs the files on Python >= 3.5.
This patch removes the version checks from configure.py (the files are just unused in earlier Python versions), as it is easier than checking Python 3's version in each PyQt port's Makefile (or to add the logic to Mk/Uses/pyqt.mk).
See also: bug 225773.