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Index: GIDs
===================================================================
--- GIDs
+++ GIDs
@@ -186,7 +186,7 @@
ot-recorder:*:243:
mastodon:*:244:
routinator:*:245:
-# free: 246
+fahclient:*:246:fahclient
fcron:*:247:
# free: 248
# free: 249
Index: MOVED
===================================================================
--- MOVED
+++ MOVED
@@ -13089,7 +13089,6 @@
audio/xmms2-scrobbler||2019-10-16|Has expired: Unfetchable, unmaintained
benchmarks/filebench||2019-10-16|Has expired: Unfetchable, unmaintained
biology/chemeq||2019-10-16|Has expired: Unfetchable, unmaintained
-biology/linux-foldingathome||2019-10-16|Has expired: Unfetchable, unmaintained
cad/dxf2fig||2019-10-16|Has expired: Unfetchable, unmaintained
comms/gsmlib||2019-10-16|Has expired: Unfetchable, unmaintained
comms/nokryptia||2019-10-16|Has expired: Unfetchable, unmaintained
Index: UIDs
===================================================================
--- UIDs
+++ UIDs
@@ -191,7 +191,7 @@
ot-recorder:*:243:243::0:0:OwnTracks Recorder:/nonexistent:/usr/sbin/nologin
mastodon:*:244:244::0:0:Mastodon User:/usr/local/www/mastodon:/bin/sh
routinator:*:245:245::0:0:Routinator 3000 Pseudo User:/nonexistent:/usr/sbin/nologin
-# free: 246
+fahclient:*:246:246::0:0:Folding@home Desktop Client:/var/db/fahclient:/usr/sbin/nologin
fcron:*:247:247::0:0:fcron pseudo-user:/nonexistent:/usr/sbin/nologin
# free: 248
# free: 249
Index: biology/Makefile
===================================================================
--- biology/Makefile
+++ biology/Makefile
@@ -68,6 +68,7 @@
SUBDIR += libbigwig
SUBDIR += libgtextutils
SUBDIR += libsbml
+ SUBDIR += linux-foldingathome
SUBDIR += mafft
SUBDIR += mapm3
SUBDIR += migrate
Index: biology/linux-foldingathome/Makefile
===================================================================
--- biology/linux-foldingathome/Makefile
+++ biology/linux-foldingathome/Makefile
@@ -2,41 +2,61 @@
# $FreeBSD$
PORTNAME= foldingathome
-PORTVERSION= 5.04
-CATEGORIES= biology
-MASTER_SITES= http://www.stanford.edu/group/pandegroup/release/
+DISTVERSION= 7.5.1-1
+CATEGORIES= biology linux
+MASTER_SITES= https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v${DISTVERSION:R}/
+EXTRACT_SUFX= .x86_64.rpm
+DISTNAME= fahclient-${DISTVERSION}
PKGNAMEPREFIX= linux-
-DISTNAME= FAH${PORTVERSION:S/.//}-Linux
-EXTRACT_SUFX= .exe
-MAINTAINER= ports@FreeBSD.org
-COMMENT= Distributed client for Protein Folding
+MAINTAINER= 0mp@FreeBSD.org
+COMMENT= Folding@home Desktop Client
-BROKEN= unfetchable
-DEPRECATED= Unfetchable, unmaintained
-EXPIRATION_DATE= 2019-10-16
+LICENSE= FAHSL
+LICENSE_NAME= Folding@home Software License
+LICENSE_FILE= ${WRKSRC}/usr/share/doc/fahclient/copyright
+LICENSE_PERMS= auto-accept no-dist-mirror no-dist-sell no-pkg-mirror no-pkg-sell
-USES= linux
-ONLY_FOR_ARCHS= i386 amd64
-REINPLACE_ARGS=
-PLIST_FILES= share/${PORTNAME}/${DISTNAME}${EXTRACT_SUFX} \
- bin/FoldingAtHome
+ONLY_FOR_ARCHS= amd64
+ONLY_FOR_ARCHS_REASON= The i386 client has not been ported
-do-extract:
- ${MKDIR} ${WRKSRC}
- ${CP} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} ${WRKSRC}
+USES= dos2unix linux
+DOS2UNIX_FILES= usr/share/doc/fahclient/sample-config.xml
+USE_RC_SUBR= fahclient
-do-build:
- ${BRANDELF} -t Linux ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX}
- ${CHMOD} 755 ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX}
+NO_BUILD= yes
+SUB_FILES= pkg-message
+SUB_LIST= FAHCLIENT_CONFIG_XML=${_FAHCLIENT_CONFIG_XML} \
+ FAHCLIENT_HOME=${_FAHCLIENT_HOME} \
+ FAHCLIENT_PROGRAM=${_FAHCLIENT_PROGRAM}
+NO_WRKSUBDIR= yes
+
+USERS= fahclient
+GROUPS= fahclient
+
+PLIST_SUB= FAHCLIENT_HOME=${_FAHCLIENT_HOME}
+
+# Keep in sync with the UIDs and GIDs files.
+_FAHCLIENT_CONFIG_XML= ${ETCDIR}/config.xml
+_FAHCLIENT_HOME= /var/db/fahclient
+_FAHCLIENT_PROGRAM= ${PREFIX}/bin/FAHClient
+
do-install:
- ${MKDIR} ${STAGEDIR}${PREFIX}/bin
- ${REINPLACE_CMD} -e "s|DATADIR|${DATADIR}|" ${SCRIPTDIR}/FoldingAtHome \
- | ${REINPLACE_CMD} -e "s|BINNAME|${DISTNAME}${EXTRACT_SUFX}|" \
- > ${STAGEDIR}${PREFIX}/bin/FoldingAtHome
- ${CHMOD} 755 ${STAGEDIR}${PREFIX}/bin/FoldingAtHome
- ${MKDIR} ${STAGEDIR}${DATADIR}
- ${CP} ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX} ${STAGEDIR}${DATADIR}/
+ ${INSTALL_PROGRAM} ${WRKSRC}/usr/bin/FAHClient \
+ ${STAGEDIR}${_FAHCLIENT_PROGRAM}
+ ${INSTALL_PROGRAM} ${WRKSRC}/usr/bin/FAHCoreWrapper \
+ ${STAGEDIR}${PREFIX}/bin/
+ ${INSTALL_DATA} ${WRKSRC}/usr/share/pixmaps/* \
+ ${STAGEDIR}${PREFIX}/share/pixmaps/
+ ${INSTALL_DATA} ${WRKSRC}/usr/share/applications/FAHWebControl.desktop \
+ ${STAGEDIR}${DESKTOPDIR}
+ @${MKDIR} ${STAGEDIR}${DOCSDIR}
+ (cd ${WRKSRC}/usr/share/doc/fahclient && \
+ ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
+ @${MKDIR} ${STAGEDIR}${ETCDIR}
+ ${INSTALL_DATA} ${STAGEDIR}${DOCSDIR}/sample-config.xml \
+ ${STAGEDIR}${_FAHCLIENT_CONFIG_XML}.sample
+ @${MKDIR} ${STAGEDIR}/var/db/fahclient
.include <bsd.port.mk>
Index: biology/linux-foldingathome/distinfo
===================================================================
--- biology/linux-foldingathome/distinfo
+++ biology/linux-foldingathome/distinfo
@@ -1,2 +1,3 @@
-SHA256 (FAH504-Linux.exe) = c491b23af1edee41db474545c0a084f3f4cf4ccf50bceb56da499df63eb38464
-SIZE (FAH504-Linux.exe) = 250964
+TIMESTAMP = 1584708946
+SHA256 (fahclient-7.5.1-1.x86_64.rpm) = da579fa02df66fc6fb48dc2bc81c4b6f46fe4f6696afe20d70b9bd5e5941837f
+SIZE (fahclient-7.5.1-1.x86_64.rpm) = 3025708
Index: biology/linux-foldingathome/files/fahclient.in
===================================================================
--- /dev/null
+++ biology/linux-foldingathome/files/fahclient.in
@@ -0,0 +1,61 @@
+#! /bin/sh -
+#
+# $FreeBSD$
+#
+# SPDX-License-Identifier: BSD-2-Clause
+#
+# Copyright (c) 2020 Mateusz Piotrowski <0mp@FreeBSD.org>
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+# 1. Redistributions of source code must retain the above copyright notice,
+# this list of conditions and the following disclaimer.
+# 2. Redistributions in binary form must reproduce the above copyright
+# notice, this list of conditions and the following disclaimer in the
+# documentation and/or other materials provided with the distribution.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
+
+# PROVIDE: fahclient
+# REQUIRE: DAEMON LOGIN NETWORKING linux
+
+. /etc/rc.subr
+
+name='fahclient'
+rcvar='fahclient_enable'
+
+load_rc_config 'fahclient'
+
+# Default settings.
+: "${fahclient_enable:=no}"
+: "${fahclient_chdir:=%%FAHCLIENT_HOME%%}"
+: "${fahclient_user:=fahclient}"
+: "${fahclient_pidfile:=/var/run/fahclient.pid}"
+: "${fahclient_config:=%%ETCDIR%%/config.xml}"
+
+pidfile="${fahclient_pidfile}"
+
+procname='%%FAHCLIENT_PROGRAM%%'
+command="/usr/sbin/daemon"
+command_args="-T ${name} -p ${pidfile} ${procname} ${fahclient_config}"
+
+start_precmd="fahclient_prestart"
+
+required_modules='linprocfs linsysfs linuxcommon'
+
+fahclient_prestart() {
+ touch "${pidfile}" && chown "${fahclient_user}" "${pidfile}"
+}
+
+run_rc_command "$1"
Index: biology/linux-foldingathome/files/pkg-message.in
===================================================================
--- /dev/null
+++ biology/linux-foldingathome/files/pkg-message.in
@@ -0,0 +1,16 @@
+[
+{ type: install
+ message: <<EOM
+In order to run the Folding@home Desktop Client daemon it is necessary to:
+- Mount linprocfs in /compat/linux/proc.
+- Mount linsysfs in /compat/linux/sys.
+- Modify user information in %%FAHCLIENT_CONFIG_XML%%.
+
+Afterwards, the fahclient daemon can be started with service(8).
+
+The logs can be accessed by inspecting the following files:
+- /var/log/messages
+- %%FAHCLIENT_HOME%%/log.txt
+EOM
+}
+]
Index: biology/linux-foldingathome/pkg-descr
===================================================================
--- biology/linux-foldingathome/pkg-descr
+++ biology/linux-foldingathome/pkg-descr
@@ -14,4 +14,4 @@
Mad Cow (BSE), CJD, ALS, Huntington's, Parkinson's disease, and many
cancers and cancer-related syndromes.
-WWW: http://folding.stanford.edu/
+WWW: https://foldingathome.org/
Index: biology/linux-foldingathome/pkg-plist
===================================================================
--- /dev/null
+++ biology/linux-foldingathome/pkg-plist
@@ -0,0 +1,12 @@
+bin/FAHClient
+bin/FAHCoreWrapper
+@dir(fahclient,fahclient,) %%ETCDIR%%
+@sample(fahclient,fahclient,) %%ETCDIR%%/config.xml.sample
+share/applications/FAHWebControl.desktop
+%%DOCSDIR%%/CHANGELOG.md
+%%DOCSDIR%%/README.md
+%%DOCSDIR%%/copyright
+%%DOCSDIR%%/sample-config.xml
+share/pixmaps/FAHClient.icns
+share/pixmaps/FAHClient.png
+@dir(fahclient,fahclient,) %%FAHCLIENT_HOME%%

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