Add support for 'make -s' silent builds

The cleanest way to do this is to set AM_LIBTOOLFLAGS = --silent. However,
AM_LIBTOOLFLAGS is not honored by automake-1.9.6-2.1 which is what I have
been using. To cleanly handle this I am updating to automake-1.11-3 which
is why it looks like there is a lot of churn in the Makefiles.