Differential D15172 Diff 41799 head/biology/unanimity/files/patch-include_pacbio_genomicconsensus_Output.h
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head/biology/unanimity/files/patch-include_pacbio_genomicconsensus_Output.h
| Property | Old Value | New Value |
|---|---|---|
| fbsd:nokeywords | null | yes \ No newline at end of property |
| svn:eol-style | null | native \ No newline at end of property |
| svn:mime-type | null | text/plain \ No newline at end of property |
| --- include/pacbio/genomicconsensus/Output.h.orig 2018-03-07 23:10:34 UTC | |||||
| +++ include/pacbio/genomicconsensus/Output.h | |||||
| @@ -80,8 +80,15 @@ inline void PrintVcfLite(const Variant& | |||||
| << "\tPASS\n"; | |||||
| } | |||||
| -inline Output::Output(const Settings& settings) : settings_{settings} | |||||
| +// Original | |||||
| +//inline Output::Output(const Settings& settings) : settings_{settings} | |||||
| +// Probably OK patch | |||||
| +//inline Output::Output(const Settings& settings) | |||||
| +// https://forums.freebsd.org/threads/compile-error-with-clang-3-4.65595/#post-385293 | |||||
| +inline Output::Output(const Settings& settings) : settings_(settings) | |||||
| { | |||||
| + // Probably OK patch | |||||
| + //settings_ = settings; | |||||
| // initialize maps | |||||
| PacBio::BAM::FastaSequenceQuery fasta{settings_.referenceFilename}; | |||||
| for (const auto& seq : fasta) { | |||||