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biology/bedtools/pkg-descr
The bedtools utilities are a suite of tools for performing a wide range of | The bedtools utilities are a suite of tools for performing a wide range of | ||||
genomics analysis tasks. The most widely-used of these tools enable genome | genomics analysis tasks. The most widely-used of these tools enable genome | ||||
arithmetic, i.e., set theory on the genome. For example, with bedtools one | arithmetic, i.e., set theory on the genome. For example, with bedtools one can | ||||
can intersect, merge, count, complement, and shuffle genomic intervals from | intersect, merge, count, complement, and shuffle genomic intervals from | ||||
multiple files in common genomic formats such as BAM, BED, GFF/GTF, and VCF. | multiple files in common genomic formats such as BAM, BED, GFF/GTF, and VCF. | ||||
Although each individual utility is designed to do a relatively simple task, | Although each individual utility is designed to do a relatively simple task, | ||||
e.g., intersect two interval files, more sophisticated analyses can be | e.g., intersect two interval files, more sophisticated analyses can be | ||||
conducted by stringing together multiple bedtools operations on the command | conducted by stringing together multiple bedtools operations on the command | ||||
line or in shell scripts. | line or in shell scripts. | ||||
WWW: http://bedtools.readthedocs.org/ | WWW: http://bedtools.readthedocs.org/ |