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diff --git a/usr.sbin/freebsd-update/freebsd-update.sh b/usr.sbin/freebsd-update/freebsd-update.sh
--- a/usr.sbin/freebsd-update/freebsd-update.sh
+++ b/usr.sbin/freebsd-update/freebsd-update.sh
@@ -2958,7 +2958,8 @@
if [ ! -d ${BASEDIR}/$D ]; then
continue
fi
- if [ -z "$(find ${BASEDIR}/$D -type f -newer ${BASEDIR}/$D/mandoc.db)" ]; then
+ if [ -f ${BASEDIR}/$D/mandoc.db ] && \
+ [ -z "$(find ${BASEDIR}/$D -type f -newer ${BASEDIR}/$D/mandoc.db)" ]; then
continue;
fi
makewhatis ${BASEDIR}/$D

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