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Index: biology/fasttree/Makefile
===================================================================
--- biology/fasttree/Makefile
+++ biology/fasttree/Makefile
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= FastTree
-PORTVERSION= 2.1.8
-PORTREVISION= 3
+PORTVERSION= 2.1.10
CATEGORIES= biology
MASTER_SITES= http://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c
@@ -11,18 +10,18 @@
MAINTAINER= bacon4000@gmail.com
COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments
-# LICENSE= unspecified open source
+LICENSE= GPLv2+
USES= compiler:openmp
-CFLAGS+= -DOPENMP -fopenmp -O3 -finline-functions -funroll-loops
+CFLAGS+= -DOPENMP -fopenmp -finline-functions -funroll-loops
LDFLAGS+= -lm
+NO_WRKSUBDIR= yes
PLIST_FILES= bin/FastTree
do-extract:
- ${MKDIR} ${WRKSRC}
- ${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC}
+ @${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC}
do-build:
cd ${WRKSRC} && ${CC} ${CFLAGS} -o FastTree ${DISTFILES} ${LDFLAGS}
Index: biology/fasttree/distinfo
===================================================================
--- biology/fasttree/distinfo
+++ biology/fasttree/distinfo
@@ -1,2 +1,3 @@
-SHA256 (FastTree-2.1.8.c) = b172d160f1b12b764d21a6937c3ce01ba42fa8743d95e083e031c6947762f837
-SIZE (FastTree-2.1.8.c) = 385231
+TIMESTAMP = 1512317739
+SHA256 (FastTree-2.1.10.c) = 54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d
+SIZE (FastTree-2.1.10.c) = 390916
Index: biology/fasttree/files/patch-FastTree-2.1.10.c
===================================================================
--- /dev/null
+++ biology/fasttree/files/patch-FastTree-2.1.10.c
@@ -0,0 +1,11 @@
+--- FastTree-2.1.10.c.orig 2017-12-04 15:09:11 UTC
++++ FastTree-2.1.10.c
+@@ -8759,7 +8759,7 @@ double pnorm(double x)
+
+ void *mymalloc(size_t sz) {
+ if (sz == 0) return(NULL);
+- void *new = malloc(sz);
++ void *new = aligned_alloc(16, sz);
+ if (new == NULL) {
+ fprintf(stderr, "Out of memory\n");
+ exit(1);

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