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Index: head/biology/bwa/Makefile
===================================================================
--- head/biology/bwa/Makefile
+++ head/biology/bwa/Makefile
@@ -2,24 +2,28 @@
# $FreeBSD$
PORTNAME= bwa
-PORTVERSION= 0.7.9a
+PORTVERSION= 0.7.17
+DISTVERSIONPREFIX=v
CATEGORIES= biology
-MASTER_SITES= SF/bio-bwa/
MAINTAINER= bacon4000@gmail.com
COMMENT= Burrows-Wheeler sequence aligner
LICENSE= GPLv3
+# From 0.7.9a: Recheck for 0.7.17.
BROKEN_aarch64= fails to compile: invalid conversion between vector type and integer type
BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type
BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2"
BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2"
BROKEN_powerpc64= fails to compile: ksw.c: emmintrin.h: No such file or directory
-USES= perl5 shebangfix tar:bzip2
+USES= gmake perl5 shebangfix tar:bzip2
SHEBANG_FILES= qualfa2fq.pl xa2multi.pl
USE_PERL5= run
+
+USE_GITHUB= yes
+GH_ACCOUNT= lh3
PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
Index: head/biology/bwa/distinfo
===================================================================
--- head/biology/bwa/distinfo
+++ head/biology/bwa/distinfo
@@ -1,2 +1,3 @@
-SHA256 (bwa-0.7.9a.tar.bz2) = f5ad30e4e5ea86a8dcd6febcb6f620a75c82b03024f64a572017c295a962eadc
-SIZE (bwa-0.7.9a.tar.bz2) = 166193
+TIMESTAMP = 1511844744
+SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
+SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593

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