Page MenuHomeFreeBSD
Files F159689590

D41393.diff
No OneTemporary
Actions

D41393.diff
View Options

diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile
--- a/biology/hyphy/Makefile
+++ b/biology/hyphy/Makefile
@@ -1,5 +1,5 @@
PORTNAME= hyphy
-DISTVERSION= 2.5.51hf
+DISTVERSION= 2.5.52
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
@@ -9,7 +9,7 @@
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
-ONLY_FOR_ARCHS= aarch64 amd64 armv7 i386 powerpc powerpc64 powerpc64le
+ONLY_FOR_ARCHS= aarch64 amd64 i386 powerpc powerpc64 powerpc64le
LIB_DEPENDS= libcurl.so:ftp/curl
TEST_DEPENDS= bash:shells/bash
@@ -24,6 +24,4 @@
AVX_CMAKE_OFF= -DNOAVX:BOOL=ON
-# FEL test is failing. See https://github.com/veg/hyphy/issues/1585
-
.include <bsd.port.mk>
diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo
--- a/biology/hyphy/distinfo
+++ b/biology/hyphy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1685303680
-SHA256 (veg-hyphy-2.5.51hf_GH0.tar.gz) = 403a5d07a4e7e67d3d8136fa83649713ad28223a2519e5fba3aa82697a03375f
-SIZE (veg-hyphy-2.5.51hf_GH0.tar.gz) = 5620954
+TIMESTAMP = 1691588992
+SHA256 (veg-hyphy-2.5.52_GH0.tar.gz) = 9e57d7af4a2bb765c48e4eccd025f22a64b692e8951f258e7b9134f7bd8bffed
+SIZE (veg-hyphy-2.5.52_GH0.tar.gz) = 5633837
diff --git a/biology/hyphy/files/patch-src_core_include_likefunc.h b/biology/hyphy/files/patch-src_core_include_likefunc.h
deleted file mode 100644
--- a/biology/hyphy/files/patch-src_core_include_likefunc.h
+++ /dev/null
@@ -1,12 +0,0 @@
---- src/core/include/likefunc.h.orig 2023-06-27 12:50:39 UTC
-+++ src/core/include/likefunc.h
-@@ -282,9 +282,6 @@ class _LikelihoodFunction: public BaseObj { (public)
- long GetThreadCount (void) {
- return 1L;
- }
-- void SetThreadCount (long) {
--
-- }
- #endif
- #endif
-
diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist
--- a/biology/hyphy/pkg-plist
+++ b/biology/hyphy/pkg-plist
@@ -190,6 +190,7 @@
%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf
%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
+%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf
%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf

File Metadata

Mime Type
text/plain
Expires
Thu, Jun 18, 2:46 AM (4 h, 48 m)
Storage Engine
blob
Storage Format
Raw Data
Storage Handle
34042028
Default Alt Text
D41393.diff (2 KB)

Event Timeline