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Index: math/sage/Makefile
===================================================================
--- math/sage/Makefile
+++ math/sage/Makefile
@@ -2,135 +2,522 @@
# $FreeBSD$
PORTNAME= sage
-PORTVERSION= 6.7
-PORTREVISION= 8
+PORTVERSION= 9.1
CATEGORIES= math
-MASTER_SITES= http://boxen.math.washington.edu/home/sagemath/sage-mirror/src/ \
- http://mirrors.xmission.com/sage/src/ \
- http://www-ftp.lip6.fr/pub/math/sagemath/src/ \
- http://mirrors.mit.edu/sage/src/ \
- http://www.sagemath.org/src-old/
+MASTER_SITES= https://mirrors.xmission.com/sage/src/ \
+ http://mirrors.xmission.com/sage/src/ \
+ https://www-ftp.lip6.fr/pub/math/sagemath/src/ \
+ https://mirrors.mit.edu/sage/src/ \
+ https://files.sagemath.org/src/ \
+ ftp://www-ftp.lip6.fr/pub/math/sagemath/src/
PKGNAMESUFFIX= -math
MAINTAINER= stephen@FreeBSD.org
COMMENT= Open source Mathematics software
-BROKEN= unfetchable
-DEPRECATED= Broken for more than 6 months
-EXPIRATION_DATE= 2020-06-05
-
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/COPYING.txt
-BUILD_DEPENDS= bash:shells/bash \
- convert:graphics/ImageMagick6 \
- ffmpeg:multimedia/ffmpeg \
- automake:devel/automake \
- autoconf:devel/autoconf
-LIB_DEPENDS= libatlas.so:math/atlas \
- liblapack.so:math/lapack
-RUN_DEPENDS= bash:shells/bash
+# See https://trac.sagemath.org/ticket/27330
+BUILD_DEPENDS= bash:shells/bash \
+ dash:shells/dash \
+ cmake:devel/cmake \
+ dreadnaut:math/nauty \
+ ${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}Babel>0:devel/py-babel@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}brial>0:math/py-brial@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}configparser>0:devel/py-configparser@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cvxopt>0:math/py-cvxopt@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cypari2>0:math/py-cypari2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}dateutil>0:devel/py-dateutil@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}defusedxml>0:devel/py-defusedxml@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}entrypoints>0:devel/py-entrypoints@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}fpylll>0:math/py-fpylll@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}gmpy2-devel>0:math/py-gmpy2-devel@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}imagesize>0:graphics/py-imagesize@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}ipython5>0:devel/ipython5@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}itsdangerous>0:security/py-itsdangerous@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}Jinja2>0i:devel/py-Jinja2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}jupyter_core>0:devel/py-jupyter_core@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}jupyter_client>0:devel/py-jupyter_client@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}kiwisolver>0:math/py-kiwisolver@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}MarkupSafe>0:textproc/py-MarkupSafe@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}mistune>0:textproc/py-mistune@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}nbconvert>0:devel/py-nbconvert@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR}\
+ ${PYNUMPY} \
+ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pandocfilters>0:textproc/py-pandocfilters@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pathlib2>0:devel/py-pathlib2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pexpect>0:misc/py-pexpect@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pickleshare>0:databases/py-pickleshare@${PY_FLAVOR}\
+ ${PY_PILLOW} \
+ ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pplpy>0:math/py-pplpy@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}prometheus-client>0:net-mgmt/py-prometheus-client@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}prompt_toolkit1>0:devel/py-prompt_toolkit1@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}ptyprocess>0:sysutils/py-ptyprocess@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pytz>0:devel/py-pytz@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pyzmq>0:net/py-pyzmq@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}rpy2>0:math/py-rpy2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}scandir>0:sysutils/py-scandir@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}send2trash>0:deskutils/py-send2trash@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}simplegeneric>0:devel/py-simplegeneric@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}snowballstemmer>0:textproc/py-snowballstemmer@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}terminado>0:net/py-terminado@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}testpath>0:devel/py-testpath@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}tornado>0:www/py-tornado@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}twisted>0:devel/py-twisted@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}vcversioner>0:devel/py-vcversioner@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}webencodings>0:converters/py-webencodings@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}werkzeug>0:www/py-werkzeug@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}zope.interface>0:devel/py-zope.interface@${PY_FLAVOR}\
+ fflas-ffpack-config:math/fflas-ffpack \
+ gfan:math/gfan \
+ git:devel/git \
+ gp2c:math/gp2c \
+ jmol:science/jmol \
+ libatomic_ops>0:devel/libatomic_ops \
+ MathJax>0:www/mathjax \
+ maxima>0:math/maxima \
+ p5-XML-Writer>0:textproc/p5-XML-Writer \
+ p5-XML-LibXML>0:textproc/p5-XML-LibXML \
+ p5-XML-LibXSLT>0:textproc/p5-XML-LibXSLT\
+ p5-File-Slurp>0:devel/p5-File-Slurp \
+ p5-JSON>0:converters/p5-JSON \
+ p5-SVG>0:textproc/p5-SVG \
+ p5-MongoDB>0:databases/p5-MongoDB \
+ p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\
+ palp>0:math/palp \
+ pandoc:textproc/hs-pandoc \
+ pari-elldata>0:math/pari_elldata\
+ pari-galdata>0:math/pari_galdata\
+ pari-galpol>0:math/pari_galpol \
+ pari-nftables>0:math/pari_nftables \
+ pari-seadata>0:math/pari_seadata\
+ QuadraticSieve:math/flintqs \
+ ninja:devel/ninja \
+ gpatch:devel/patch \
+ rubiks>0:math/rubiks \
+ sympow:math/sympow \
+ tachyon:graphics/tachyon \
+ three.js>0:www/threejs \
+ yasm:devel/yasm \
+ gtar:archivers/gtar \
+ convert:graphics/ImageMagick6 \
+ ffmpeg:multimedia/ffmpeg \
+ ${LOCALBASE}/lib/libBLT.a:x11-toolkits/blt
+LIB_DEPENDS= libarb.so:math/arb \
+ libboost_thread.so:devel/boost-libs \
+ libbraiding.so:math/libbraiding \
+ libbrial.so:math/brial \
+ libCbc.so:math/cbc \
+ libcdd.so:math/cddlib \
+ libcliquer.so:math/cliquer \
+ libcurl.so:ftp/curl \
+ libec.so:math/eclib \
+ libecl.so:lang/ecl \
+ libecm.so:math/gmp-ecm \
+ libflint.so:math/flint2 \
+ libfplll.so:math/fplll \
+ libfreetype.so:print/freetype2 \
+ libgc.so:devel/boehm-gc \
+ libgc-threaded.so:devel/boehm-gc-threaded\
+ libgf2x.so:math/gf2x \
+ libgivaro.so:math/givaro \
+ libglpk.so:math/glpk \
+ libgap.so:math/gap \
+ libgmp.so:math/gmp \
+ libgsl.so:math/gsl \
+ libhomfly.so:math/libhomfly \
+ libiml.so:math/iml \
+ libisl.so:devel/isl \
+ libLfunction.so:math/lcalc \
+ libffi.so:devel/libffi \
+ libgd.so:graphics/gd \
+ libgiac.so:math/giacxcas \
+ liblinbox.so:math/linbox \
+ liblrcalc.so:math/lrcalc \
+ liblrsgmp.so:math/lrslib \
+ libm4ri.so:math/m4ri \
+ libm4rie.so:math/m4rie \
+ libmpc.so:math/mpc \
+ libmpfi.so:math/mpfi \
+ libmpfr.so:math/mpfr \
+ libmpir.so:math/mpir \
+ libntl.so:math/ntl \
+ libpari.so:math/pari \
+ libpcre.so:devel/pcre \
+ libplanarity.so:math/planarity \
+ libpng.so:graphics/png \
+ libppl.so:devel/ppl \
+ libpynac.so:math/pynac \
+ libR.so:math/R \
+ librw.so:math/rankwidth \
+ libSingular.so:math/singular \
+ libamd.so:math/suitesparse \
+ libsemigroups.so:math/libsemigroups \
+ libsymmetrica.so:math/symmetrica\
+ libzmq.so:net/libzmq4 \
+ libzn_poly-0.9.so:math/zn_poly \
+ libqd.so:math/qd \
+ libisl.so:devel/isl \
+ libblas.so:math/blas \
+ libicuuc.so:devel/icu \
+ libtiff.so:graphics/tiff \
+ liblapack.so:math/lapack \
+ libedit.so:devel/libedit \
+ libwebp.so:graphics/webp \
+ libpcre2-8.so:devel/pcre2 \
+ libgdbm.so:databases/gdbm \
+ liblcms2.so:graphics/lcms2 \
+ libopenjp2.so:graphics/openjpeg
+RUN_DEPENDS= bash:shells/bash \
+ dreadnaut:math/nauty \
+ ${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}Babel>0:devel/py-babel@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}brial>0:math/py-brial@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}configparser>0:devel/py-configparser@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cvxopt>0:math/py-cvxopt@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cypari2>0:math/py-cypari2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}dateutil>0:devel/py-dateutil@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}defusedxml>0:devel/py-defusedxml@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}entrypoints>0:devel/py-entrypoints@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}fpylll>0:math/py-fpylll@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}future>0:devel/py-future@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}gmpy2-devel>0:math/py-gmpy2-devel@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}imagesize>0:graphics/py-imagesize@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}ipython5>0:devel/ipython5@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}itsdangerous>0:security/py-itsdangerous@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}jsonschema>0:devel/py-jsonschema@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}jupyter_core>0:devel/py-jupyter_core@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}jupyter_client>0:devel/py-jupyter_client@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}kiwisolver>0:math/py-kiwisolver@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}MarkupSafe>0:textproc/py-MarkupSafe@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}mistune>0:textproc/py-mistune@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}mpmath>0:math/py-mpmath@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}nbconvert>0:devel/py-nbconvert@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}nbformat>0:devel/py-nbformat@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR}\
+ ${PYNUMPY} \
+ ${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pandocfilters>0:textproc/py-pandocfilters@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pathlib2>0:devel/py-pathlib2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pexpect>0:misc/py-pexpect@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pickleshare>0:databases/py-pickleshare@${PY_FLAVOR}\
+ ${PY_PILLOW} \
+ ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pplpy>0:math/py-pplpy@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}prometheus-client>0:net-mgmt/py-prometheus-client@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}prompt_toolkit1>0:devel/py-prompt_toolkit1@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}ptyprocess>0:sysutils/py-ptyprocess@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pytz>0:devel/py-pytz@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}pyzmq>0:net/py-pyzmq@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}rpy2>0:math/py-rpy2@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}scandir>0:sysutils/py-scandir@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}send2trash>0:deskutils/py-send2trash@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}simplegeneric>0:devel/py-simplegeneric@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}snowballstemmer>0:textproc/py-snowballstemmer@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}terminado>0:net/py-terminado@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}testpath>0:devel/py-testpath@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}tornado>0:www/py-tornado@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}twisted>0:devel/py-twisted@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}vcversioner>0:devel/py-vcversioner@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}webencodings>0:converters/py-webencodings@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}werkzeug>0:www/py-werkzeug@${PY_FLAVOR}\
+ ${PYTHON_PKGNAMEPREFIX}zope.interface>0:devel/py-zope.interface@${PY_FLAVOR}\
+ fflas-ffpack-config:math/fflas-ffpack \
+ gfan:math/gfan \
+ git:devel/git \
+ gp2c:math/gp2c \
+ jmol:science/jmol \
+ MathJax>0:www/mathjax \
+ maxima>0:math/maxima \
+ p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\
+ palp>0:math/palp \
+ pandoc:textproc/hs-pandoc \
+ pari-elldata>0:math/pari_elldata\
+ pari-galdata>0:math/pari_galdata\
+ pari-galpol>0:math/pari_galpol \
+ pari-nftables>0:math/pari_nftables \
+ pari-seadata>0:math/pari_seadata\
+ QuadraticSieve:math/flintqs \
+ rubiks>0:math/rubiks \
+ sympow:math/sympow \
+ tachyon:graphics/tachyon \
+ three.js>0:www/threejs \
+ yasm:devel/yasm \
+ pixz:archivers/pixz
-pre-extract:
- @${ECHO_MSG}
- @${ECHO_MSG} Instead of installing the port, which will take a considerable amount of
- @${ECHO_MSG} extra time and space, you can instead type \"make build\". Then you can move
- @${ECHO_MSG} work/${PORTNAME}-${PORTVERSION} to wherever you like, and run sage from there.
- @${ECHO_MSG} However, there is no guarantee that this alternative will always work.
-. if !(defined(PACKAGE_BUILDING) || defined(BATCH))
- @sleep 10
-. endif
+USES= autoreconf blaslapack:openblas compiler:c++11-lib fortran \
+ gettext gmake gnome iconv jpeg libtool localbase ncurses perl5 \
+ pkgconfig python:3.6+ readline shebangfix sqlite tk xorg
+USE_TEX= latex:build pdftex:build tex:build
+USE_XORG= x11 xext xscrnsaver
+USE_GNOME= cairo glib20 pango
+USE_PYTHON= cython
+USE_JAVA= yes # for science/jmol
-PLIST_FILES= bin/sage
-USE_TEX= latex:build
-USES= gmake iconv jpeg tk perl5
+CONFLICTS= python-3.* \
+ ${PYTHON_PKGNAMEPREFIX}ipykernel5-5.* \
+ ${PYTHON_PKGNAMEPREFIX}ipython-7.* \
+ ${PYTHON_PKGNAMEPREFIX}ipywidgets-7.* \
+ ${PYTHON_PKGNAMEPREFIX}notebook-6.* \
+ ${PYTHON_PKGNAMEPREFIX}prompt_toolkit-2.* \
+ ${PYTHON_PKGNAMEPREFIX}widgetsnbextension-3.5.*
-# Optimization flags will be defined by the source
-CFLAGS:= ${CFLAGS:C/^-O.*$//}
-FFLAGS:= ${CFLAGS:C/^-O.*$//}
+SHEBANG_FILES= .
+SHEBANG_LANG+= dash
+dash_OLD_CMD= /bin/dash
+dash_CMD= ${LOCALBASE}/bin/dash
-MAKE_ENV+= SAGE_PORT=yes \
- SAGE_ATLAS_LIB=${LOCALBASE}/lib \
- DOT_SAGE=${WRKSRC}/tmp/.sage \
- SAGE_FAT_BINARY=yes \
- PERL=${PERL}
+DISABLE_BINUTILS= yes
-# The following is needed for the lapack subpackage.
-MAKE_ARGS+= ARCH="${AR}"
+LIBS= -lomp -pthread
+.if !defined{WITH_DEBUG}
+LDFLAGS+= -s
+.endif
+BLDDIR= ${WRKDIR}/build
+GNU_CONFIGURE= yes
+CONFIGURE_ENV= SAGE_PORT=yes CC=${CC} GCC=${CC} CXX=${CXX} AS=${AS} LD=${LD} \
+ SAGE_LOCAL=${PREFIX} SAGE_DESTDIR=${BLDDIR}/ \
+ DESTDIR=${BLDDIR}/${PREFIX} PATCH=${LOCALBASE}/bin/gpatch
+CONFIGURE_ARGS= --with-system-gcc=force \
+ --with-system-python3=yes \
+ --localstatedir=/var
+MAKE_ENV= MAKE=${GMAKE} DESTDIR=${BLDDIR}
+REINPLACE_ARGS= -i ''
+BINARY_ALIAS= patch=${LOCALBASE}/bin/gpatch
+PLIST_SUB= VER=${PORTVERSION}
-post-patch:
-# Create wrapper for invocation of make.
- @${MKDIR} ${WRKSRC}/local/bin
- @${LN} -s -f ${LOCALBASE}/bin/gmake ${WRKSRC}/local/bin/make
+OPTIONS_DEFINE= DOCS
+PORTDOCS= *
-# Create wrapper for invocation of ld.
- @${SED} -e 's#%%LD%%#${LOCALBASE}/bin/ld#' \
- ${FILESDIR}/ld.in > ${WRKSRC}/local/bin/ld
- @${CHMOD} +x ${WRKSRC}/local/bin/ld
+.if defined(PACKAGE_BUILDING)
+CONFIGURE_ARGS+=--enable-build-as-root
+.endif
-post-build:
- ${RM} -r ${WRKSRC}/tmp/.sage
- ${CHMOD} -R a+rX ${WRKSRC}
+.include <bsd.port.pre.mk>
-check regression-test test: build
- @${ECHO_MSG} This test can also be performed after installation by typing \"sage -testall\".
- @${ECHO_MSG}
- cd ${WRKSRC} && ${SETENV} DOT_SAGE=${WRKSRC}/tmp/.sage ./sage -testall
- ${RM} ${WRKSRC}/python*.core
+WSDIR= ${BLDDIR}${PREFIX}
+SPKG_INST= configure.ac configure build/sage_bootstrap/uninstall.py \
+ build/make/install src/bin/sage-env
+PY2FIX= bin lib/${PYTHON_VERSION}
+DOC2FIX= .pickle .doctree
+SE2FIX= ^ECLDIR= ^SINGULAR MAXIMA_PREFIX
+SHR2FIX= GAP_ROOT_DIR PPLPY_DOCS SINGULARPATH
+STG2FIX= bin/sage-env-config default.qepcadrc \
+ share/jupyter/kernels/sagemath/kernel.json
+BADLN= kernels/sagemath/doc nbextensions/jsmol \
+ nbextensions/mathjax nbextensions/threejs
+# External dependencies not yet handled by SageMath
+PY_LIBS= alabaster babel bleach certifi configparser cvxopt cycler \
+ cypari cysignals cython dateutil decorator defusedxml docutils \
+ entrypoints fpylll future gmpy2 html5lib imagesize ipython \
+ ipython_genutils itsdangerous jinja2 jsonschema jupyter_client \
+ jupyter_core kiwisolver markupsafe matplotlib mistune mpmath \
+ nbconvert nbformat networkx nose numpy packaging pandocfilters \
+ pathlib2 pexpect pickleshare pillow pkgconfig pplpy \
+ prometheus_client prompt_toolkit psutil ptyprocess pyparsing \
+ pytz pyzmq requests rpy2 scandir scipy send2trash simplegeneric \
+ six snowballstemmer sympy terminado testpath tornado traitlets \
+ twisted vcversioner wcwidth webencodings werkzeug zope_interface
+PY_FILES= sage_brial
+JS_LIBS= jmol mathjax threejs
+SPKGCM4= brial ecl gap gc giac libhomfly linbox maxima palp pynac rubiks \
+ singular suitesparse sympow zn_poly
-# Don't build docs (because of mysterious race conditions).
-ALL_TARGET= build
+post-patch:
+ ${CP} ${FILESDIR}/psutil__arch__bsd__freebsd_socks.c.patch \
+ ${WRKSRC}/build/pkgs/psutil/patches/
+.for sp in ${SPKGCM4}
+ ${CP} ${FILESDIR}/${sp}_spkg-configure.m4 \
+ ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4
+.endfor
+.for sp in ${PY_LIBS}
+ ${CP} ${FILESDIR}/py_libs_spkg-configure.m4 \
+ ${WRKSRC}/build/pkgs/${sp:C/pari2/pari/}/spkg-configure.m4
+.endfor
+.for sp in ${PY_FILES}
+ ${SED} -e 's|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \
+ > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4
+.endfor
+.for sp in ${JS_LIBS}
+ ${SED} -e 's|%%LOCALBASE%%|${LOCALBASE}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \
+ > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4
+.endfor
-INSTALL_SAGE_DIR= ${PREFIX}/${PORTNAME}-${PORTVERSION}
-STAGED_SAGE_DIR= ${STAGEDIR}${INSTALL_SAGE_DIR}
-do-install:
- cd ${WRKDIR} && ${FIND} -s ${WRKSRC} | \
- ${GREP} -v '^${WRKSRC}/upstream/' | \
- ${GREP} -v '^${WRKSRC}/tmp' | \
- ${SED} -e 's#${WRKDIR}/##' | \
- ${CPIO} -pmud -R ${BINOWN}:${BINGRP} ${STAGEDIR}${PREFIX}
- ${ECHO_CMD} | ${SETENV} DOT_SAGE=${STAGED_SAGE_DIR}/tmp/.sage ${STAGED_SAGE_DIR}/sage
- ${RM} -r ${STAGED_SAGE_DIR}/tmp/.sage
- ${SED} -e "s+#SAGE_ROOT.*+SAGE_ROOT=${INSTALL_SAGE_DIR}+" ${WRKSRC}/sage > ${STAGEDIR}${PREFIX}/bin/sage
- ${CHMOD} ${BINMODE} ${STAGEDIR}${PREFIX}/bin/sage
+pre-configure:
+ ${REINPLACE_CMD} -e 's|SAGE_LOCAL="$$prefix"|SAGE_LOCAL="${WSDIR}"|' \
+ -e 's|lib/pkgconfig|libdata/pkgconfig|' ${WRKSRC}/configure.ac
+ ${REINPLACE_CMD} -e 's|SAGE_LOCAL="@prefix@"|SAGE_LOCAL="${WSDIR}"|' \
+ ${WRKSRC}/src/bin/sage-env-config.in
+ ${REINPLACE_CMD} -e 's|%%CFLAGS%%|${CFLAGS}|;s|%%LDFLAGS%%|${LDFLAGS}|' \
+ ${WRKSRC}/build/pkgs/tachyon/patches/Make-arch.patch
+ ${REINPLACE_CMD} -e '/SUITESPARSE_INC_DIR/s|$${SAGE_LOCAL}/include|${LOCALBASE}/include/suitesparse|'\
+ ${WRKSRC}/build/pkgs/cvxopt/spkg-install.in
+.for f in ${PY_LIBS}
+ ${REINPLACE_CMD} -e 's|python3|${PYTHON_CMD}|;s|py_libs|${f}|' \
+ ${WRKSRC}/build/pkgs/${f}/spkg-configure.m4
+.endfor
+ ${REINPLACE_CMD} -e 's|import cypari|import cypari2|' \
+ ${WRKSRC}/build/pkgs/cypari/spkg-configure.m4
+ ${REINPLACE_CMD} -e 's|import ipython|import IPython|' \
+ ${WRKSRC}/build/pkgs/ipython/spkg-configure.m4
+ ${REINPLACE_CMD} -e 's|import pillow|import PIL|' \
+ ${WRKSRC}/build/pkgs/pillow/spkg-configure.m4
+ ${REINPLACE_CMD} -e 's|import pplpy|import ppl|' \
+ ${WRKSRC}/build/pkgs/pplpy/spkg-configure.m4
+ ${REINPLACE_CMD} -e 's|import pyzmq|import zmq|' \
+ ${WRKSRC}/build/pkgs/pyzmq/spkg-configure.m4
+ ${REINPLACE_CMD} -e 's|import zope_interface|import zope.interface|' \
+ ${WRKSRC}/build/pkgs/zope_interface/spkg-configure.m4
+ ${REINPLACE_CMD} -e '/GAP_ROOT=/s|$$SAGE_LOCAL|${LOCALBASE}|' \
+ ${WRKSRC}/build/pkgs/gap_packages/spkg-install.in
+ ${REINPLACE_CMD} -e "/os.path.join/s|SAGE_LOCAL|'${LOCALBASE}'|"\
+ ${WRKSRC}/src/sage/libs/gap/util.pyx
+ ${REINPLACE_CMD} -e "/os.path.join(SAGE_LOCAL/s|SAGE_LOCAL|'${LOCALBASE}'|" \
+ ${WRKSRC}/src/sage/env.py
+ ${REINPLACE_CMD} -e "/^library_dirs/s|SAGE_LOCAL|'${LOCALBASE}'|" \
+ ${WRKSRC}/src/setup.py
+.for f in ${SHR2FIX}
+ ${REINPLACE_CMD} -e "/${f}/s|SAGE_SHARE|'${LOCALBASE}/share/'|" \
+ ${WRKSRC}/src/sage/env.py
+.endfor
+ ${REINPLACE_CMD} -e "/JMOL_DIR/s|SAGE_SHARE|'${JAVASHAREDIR}'|" \
+ -e "/JMOL_DIR/s|jmol|classes|" \
+ ${WRKSRC}/src/sage/env.py
+ ${REINPLACE_CMD} -e "/JSMOL_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \
+ -e "/JSMOL_DIR/s|jsmol|JSmol|" \
+ ${WRKSRC}/src/sage/env.py
+ ${REINPLACE_CMD} -e "/MATHJAX_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \
+ -e "/MATHJAX_DIR/s|mathjax|MathJax|" \
+ ${WRKSRC}/src/sage/env.py
+ ${REINPLACE_CMD} -e "/THREEJS_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \
+ ${WRKSRC}/src/sage/env.py
+.for f in ${SE2FIX}
+ ${REINPLACE_CMD} -e '/${f}/s|$$SAGE_LOCAL|${LOCALBASE}|' \
+ ${WRKSRC}/src/bin/sage-env
+.endfor
+ ${REINPLACE_CMD} -e '/LDFLAGS=/s|-rpath,$$SAGE_LOCAL|-rpath,${LOCALBASE}|' \
+ ${WRKSRC}/src/bin/sage-env
+.for f in ${SPKG_INST}
+ ${REINPLACE_CMD} -e 's|/var/lib/sage|/share/libdata/${PORTNAME}|' \
+ ${WRKSRC}/${f}
+.endfor
+ (cd ${WRKSRC} && ./bootstrap)
+ ${MKDIR} ${BLDDIR}${PREFIX}/lib/pkgconfig # Removed thereafter
-post-install:
- @${FIND} -s ${STAGED_SAGE_DIR} -not -type d | \
- ${SED} -e 's#${STAGEDIR}${PREFIX}/##' >> ${TMPPLIST}
- @${FIND} -s ${STAGED_SAGE_DIR} -type d -empty | \
- ${SED} -e 's#${STAGEDIR}${PREFIX}/#@dir #' >> ${TMPPLIST}
+post-build:
+.for d in ${PY2FIX}
+ ${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "${WSDIR}/bin/python" {} \; |\
+ ${XARGS} ${SED} -i "" -e 's|${WSDIR}/bin/pytho.*|${PYTHON_CMD}|'
+.endfor
+.for d in ${PY2FIX}
+ ${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "/usr/bin/env python" {} \; |\
+ ${XARGS} ${SED} -i "" -e 's|/usr/bin/env pytho.*|${PYTHON_CMD}|'
+.endfor
+ ${FIND} ${BLDDIR}/${PYTHON_LIBDIR} -type d -name __pycache__ | \
+ ${XARGS} ${RM} -r
+.for f in ${DOC2FIX}
+ ${FIND} ${BLDDIR}${DOCSDIR} -type f -name "*${f}" | ${XARGS} \
+ ${SED} -i "" -e 's|${BLDDIR}||g'
+.endfor
+.for f in ${STG2FIX}
+ ${SED} -i "" -e 's|${BLDDIR}||g' ${BLDDIR}${PREFIX}/${f}
+.endfor
+ ${RM} ${BLDDIR}${PYTHON_CMD} ${BADLN:C|^|${BLDDIR}${PREFIX}/share/jupyter/|}
+ ${RM} -r ${BLDDIR}${PREFIX}/var
+ ${RM} ${BLDDIR}${PREFIX}/lib64 ${BLDDIR}${PREFIX}/libdata/pkgconfig/blas.pc \
+ ${BLDDIR}${PREFIX}/libdata/pkgconfig/cblas.pc \
+ ${BLDDIR}${PREFIX}/libdata/pkgconfig/gsl.pc \
+ ${BLDDIR}${PREFIX}/libdata/pkgconfig/lapack.pc
+ # Cannot use a package system for pip and setuptools
+ ${RM} ${BLDDIR}${PREFIX}/bin/easy_install* ${BLDDIR}${PREFIX}/bin/pip*
+ ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/pip-* ${BLDDIR}${PYTHON_SITELIBDIR}/pip/
+ ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/setuptools* \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/easy_install.py \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/pkg_resources \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/__pycache__/easy_install*
+ # Remoce CONFLICTS with py3x-backports-1
+ ${RM} ${BLDDIR}${PYTHON_SITELIBDIR}/backports/__init__.py \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/backports/__init__.cpython-${PYTHON_SUFFIX}.pyc
+ # Wont use a system package for sphinx because it would need py-sphinx18 + its dependencies
+ # Check https://trac.sagemath.org/ticket/28856
+ ${RM} ${BLDDIR}${PREFIX}/bin/sphinx-*
+ ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/sphinx
+ ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/sphinxcontrib \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/Sphinx-* \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/sphinxcontrib_websupport-*
+ ${RM} -r ${BLDDIR}${PREFIX}/bin/pygmentize \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/Pygments-* \
+ ${BLDDIR}${PYTHON_SITELIBDIR}/pygments
+ # ${TRUE} because compilation of some .py fails: compileall.py -q to see errors
+ (cd ${WSDIR} && (${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \
+ -d ${PYTHONPREFIX_SITELIBDIR} -f ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;} || \
+ ${TRUE}))
+ ${FIND} ${BLDDIR}${PREFIX} -name "*.bak" -delete
-.include <bsd.port.pre.mk>
+do-install:
+ cd "${BLDDIR}" && ${FIND} . | ${CPIO} -pdum ${STAGEDIR}
+ # Remove bad links
+ ${LN} -sf ${DOCSDIR} \
+ ${STAGEDIR}${PREFIX}/share/jupyter/kernels/sagemath/doc
+ ${LN} -sf ${LOCALBASE}/www/JSmol \
+ ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/jsmol
+ ${LN} -sf ${LOCALBASE}/www/MathJax \
+ ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/mathjax
+ ${LN} -sf ${LOCALBASE}/www/threejs \
+ ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/threejs
+ ${RM} ${STAGEDIR}${PREFIX}/lib64 ${STAGEDIR}${PREFIX}/libdata/pkgconfig/blas.pc \
+ ${STAGEDIR}${PREFIX}/libdata/pkgconfig/cblas.pc \
+ ${STAGEDIR}${PREFIX}/libdata/pkgconfig/gsl.pc \
+ ${STAGEDIR}${PREFIX}/libdata/pkgconfig/lapack.pc
-MAKE_ENV+= MAKE="${MAKE} -j${MAKE_JOBS_NUMBER}"
-
-.ifdef MAINTAINER_MODE
-test-fbsd-patches: patch
- ${RM} -r ${WRKSRC}/build/pkgs/*/src; \
- for d in ${WRKSRC}/build/pkgs/*; do \
- if ls $$d/fbsd-patch-* > /dev/null 2>&1; then \
- ${ECHO_MSG} Testing patches in $${d##*/}; \
- b=$${d##*/}-`${CAT} $$d/package-version.txt | ${SED} 's/\.p.*//'`; \
- c=${WRKSRC}/upstream/$$b.tar.bz2 ; \
- if [ ! -e $$c ]; then \
- c=${WRKSRC}/upstream/$$b.tar.gz ; \
- if [ ! -e $$c ]; then \
- ${ECHO_MSG} Couldn\'t find $$c; \
- exit 1; \
- fi; \
- fi; \
- b=`echo $$b | sed 's/python/Python/'` ; \
- if ! (cd $$d && tar xf $$c && ${MV} $$b src); then \
- ${ECHO_MSG} Unable to unarchive $$c; \
- exit 1; \
- fi; \
- if ! (cd $$d && ${CAT} fbsd-patch-* | patch); then \
- ${ECHO_MSG} Patches in $${d##*/} failed; \
- exit 1; \
- fi; \
- fi; \
- done; \
- ${RM} -r ${WRKSRC}/build/pkgs/*/src
-.endif
-
.include <bsd.port.post.mk>
Index: math/sage/distinfo
===================================================================
--- math/sage/distinfo
+++ math/sage/distinfo
@@ -1,2 +1,3 @@
-SHA256 (sage-6.7.tar.gz) = da4688cb48c221356005935c666fa3eac96c50de60f3e5b274072f0520745677
-SIZE (sage-6.7.tar.gz) = 487207063
+TIMESTAMP = 1590251415
+SHA256 (sage-9.1.tar.gz) = 1ca30cc554e99910752170214e1d30576800ec897d66c77481b4eb505afefbb3
+SIZE (sage-9.1.tar.gz) = 1125768506
Index: math/sage/files/brial_spkg-configure.m4
===================================================================
--- math/sage/files/brial_spkg-configure.m4
+++ math/sage/files/brial_spkg-configure.m4
@@ -0,0 +1,47 @@
+SAGE_SPKG_CONFIGURE([brial], [
+ SAGE_SPKG_DEPCHECK([boost m4ri], [
+ # If we're using the system m4ri and boost, ensure that we can
+ # compile and run an executable linked against both libbrial and
+ # libbrial_groebner (both are used by SageMath).
+ AC_LANG_PUSH(C++)
+ SAVED_LIBS=$LIBS
+ LIBS="$LIBS -lbrial -lbrial_groebner"
+ AC_MSG_CHECKING([if we can link against brial libraries])
+ AC_RUN_IFELSE([
+ AC_LANG_PROGRAM([
+ #include <polybori.h>
+ #include <polybori/groebner/groebner_alg.h>
+ USING_NAMESPACE_PBORI
+ USING_NAMESPACE_PBORIGB
+
+ class MyConstant : public BooleConstant{
+ public: void negate() { this->m_value = !this->m_value; }
+ };
+ ],[
+ BoolePolyRing r = BoolePolyRing(2, COrderEnums::dlex);
+ ReductionStrategy rs = ReductionStrategy(r);
+ rs.llReduceAll(); // uses groebner lib
+ if (2 != r.nVariables()) { return 1; }
+ if (r.constant(true) == r.constant(false)) { return 2; }
+ MyConstant f = MyConstant();
+ f.negate(); // ensures v1.1.0+ if m_value isn't const
+ if (!f.isOne()) { return 3; }
+ return 0;
+ ])
+ ],
+ [
+ AC_MSG_RESULT([yes])
+ sage_spkg_install_brial=no
+ ],
+ [
+ AC_MSG_RESULT([no])
+ sage_spkg_install_brial=yes
+ ])
+ LIBS=$SAVED_LIBS
+ AC_LANG_POP
+ ],
+ [ # If we're installing sage's boost or m4ri, then we have to
+ # install its BRiAl, too.
+ sage_spkg_install_brial=yes
+ ])
+])
Index: math/sage/files/ecl_spkg-configure.m4
===================================================================
--- math/sage/files/ecl_spkg-configure.m4
+++ math/sage/files/ecl_spkg-configure.m4
@@ -0,0 +1,6 @@
+SAGE_SPKG_CONFIGURE([ecl], [
+ AC_PATH_PROG([ECL], [ecl])
+ AS_IF([test x$ECL = x], [
+ AC_MSG_NOTICE([ecl not found. Installing ecl])
+ sage_spkg_install_ecl=yes])
+])
Index: math/sage/files/gap_spkg-configure.m4
===================================================================
--- math/sage/files/gap_spkg-configure.m4
+++ math/sage/files/gap_spkg-configure.m4
@@ -0,0 +1,8 @@
+SAGE_SPKG_CONFIGURE([gap], [
+ SAGE_SPKG_DEPCHECK([gmp], [
+ AC_CHECK_HEADER([gap/system.h], [
+ AC_SEARCH_LIBS([GAP_COMM], [gap], [
+ ], [sage_spkg_install_gap=yes])
+ ], [sage_spkg_install_gap=yes])
+ ])
+])
Index: math/sage/files/gc_spkg-configure.m4
===================================================================
--- math/sage/files/gc_spkg-configure.m4
+++ math/sage/files/gc_spkg-configure.m4
@@ -0,0 +1,6 @@
+SAGE_SPKG_CONFIGURE([gc], [
+ SAGE_SPKG_DEPCHECK([libatomic_ops], [
+ dnl checking with pkg-config
+ PKG_CHECK_MODULES([GC], [bdw-gc-threaded >= 7.6.4], [], [sage_spkg_install_gc=yes])
+ ])
+])
Index: math/sage/files/gcc.in
===================================================================
--- math/sage/files/gcc.in
+++ math/sage/files/gcc.in
@@ -1,14 +0,0 @@
-#!/bin/sh
-
-# This is a wrapper to redirect compiler invokations to the port of gcc that
-# contains fortran. LDFLAGS needs to be added so that the linker knows where
-# to find the dynamic libraries.
-
-# If the compiler is invoked with the argument "-v", adding LDFLAGS to the
-# arguments results in an error which stops some packages being built.
-
-if [ "x$*" = "x-v" ]; then
- exec %%CC%% "$@"
-else
- exec %%CC%% %%LDFLAGS%% -Wl,--copy-dt-needed-entries "$@"
-fi
Index: math/sage/files/giac_spkg-configure.m4
===================================================================
--- math/sage/files/giac_spkg-configure.m4
+++ math/sage/files/giac_spkg-configure.m4
@@ -0,0 +1,8 @@
+SAGE_SPKG_CONFIGURE([giac], [
+ SAGE_SPKG_DEPCHECK([pari], [
+ AC_CHECK_HEADER([giac/giac.h], [
+ AC_SEARCH_LIBS([ConvertUTF16toUTF8], [giac], [
+ ], [sage_spkg_install_giac=yes])
+ ], [sage_spkg_install_giac=yes])
+ ])
+])
Index: math/sage/files/jmol_spkg-configure.m4.in
===================================================================
--- math/sage/files/jmol_spkg-configure.m4.in
+++ math/sage/files/jmol_spkg-configure.m4.in
@@ -0,0 +1,10 @@
+SAGE_SPKG_CONFIGURE(
+ [jmol], [dnl direct testing of file existence
+ AC_MSG_CHECKING(JSmol installation...)
+ if [[ -f %%LOCALBASE%%/www/JSmol/JSmol.lite.js ]] ; then
+ AC_MSG_RESULT(OK)
+ else
+ AC_MSG_RESULT(KO)
+ sage_spkg_install_jmol=yes
+ fi
+])
Index: math/sage/files/ld.in
===================================================================
--- math/sage/files/ld.in
+++ math/sage/files/ld.in
@@ -1,3 +0,0 @@
-#!/bin/sh
-
-exec %%LD%% --copy-dt-needed-entries "$@"
Index: math/sage/files/libhomfly_spkg-configure.m4
===================================================================
--- math/sage/files/libhomfly_spkg-configure.m4
+++ math/sage/files/libhomfly_spkg-configure.m4
@@ -0,0 +1,8 @@
+SAGE_SPKG_CONFIGURE([libhomfly], [
+ SAGE_SPKG_DEPCHECK([gc], [
+ AC_CHECK_HEADER([homfly.h], [
+ AC_SEARCH_LIBS([homfly], [homfly], [
+ ], [sage_spkg_install_libhomfly=yes])
+ ], [sage_spkg_install_libhomfly=yes])
+ ])
+])
Index: math/sage/files/linbox_spkg-configure.m4
===================================================================
--- math/sage/files/linbox_spkg-configure.m4
+++ math/sage/files/linbox_spkg-configure.m4
@@ -0,0 +1,6 @@
+SAGE_SPKG_CONFIGURE([linbox], [
+ SAGE_SPKG_DEPCHECK([gmp givaro fflas-ffpack], [
+ dnl checking with pkg-config
+ PKG_CHECK_MODULES([LINBOX], [linbox >= 1.6.3], [], [sage_spkg_install_linbox=yes])
+ ])
+])
Index: math/sage/files/mathjax_spkg-configure.m4.in
===================================================================
--- math/sage/files/mathjax_spkg-configure.m4.in
+++ math/sage/files/mathjax_spkg-configure.m4.in
@@ -0,0 +1,10 @@
+SAGE_SPKG_CONFIGURE(
+ [mathjax], [dnl direct testing of file existence
+ AC_MSG_CHECKING(MathJax installation...)
+ if [[ -f %%LOCALBASE%%/www/MathJax/MathJax.js ]] ; then
+ AC_MSG_RESULT(OK)
+ else
+ AC_MSG_RESULT(KO)
+ sage_spkg_install_mathjax=yes
+ fi
+])
Index: math/sage/files/maxima_spkg-configure.m4
===================================================================
--- math/sage/files/maxima_spkg-configure.m4
+++ math/sage/files/maxima_spkg-configure.m4
@@ -0,0 +1,6 @@
+SAGE_SPKG_CONFIGURE([maxima], [
+ AC_PATH_PROG([MAXIMA], [maxima])
+ AS_IF([test x$MAXIMA = x], [
+ AC_MSG_NOTICE([maxima not found. Installing maxima])
+ sage_spkg_install_maxima=yes])
+])
Index: math/sage/files/optional-packages.txt
===================================================================
--- math/sage/files/optional-packages.txt
+++ math/sage/files/optional-packages.txt
@@ -1,23 +0,0 @@
-Sage comes with optional packages. Unfortunately they have to be downloaded
-and installed after the port is built, and preferably before the port is
-installed (see note 4). But because of the security risk of downloading files
-without checksums, they can only be installed manually as follows:
-
-cd /usr/ports/math/sage
-make build
-work/sage-*/sage -optional # See note 1.
-work/sage-*/sage -i $OPTIONAL_PACKAGE_NAME # See note 2.
-make install # See note 3.
-
-1. This command gives a list of the optional packages available.
-2. This will download and install the optional package. Not all packages
- build properly, but if they don't build they won't be installed.
-3. All the files associated with the installed optional packages will be
- included in the plist file, and so will be deinstalled along with
- everything else when the pkg_delete command is used.
-4. You can also try installing the packages AFTER the port is installed,
- but for some reason this doesn't always work.
-
-AND
-
-5. Install and use these at your own risk.
Index: math/sage/files/palp_spkg-configure.m4
===================================================================
--- math/sage/files/palp_spkg-configure.m4
+++ math/sage/files/palp_spkg-configure.m4
@@ -0,0 +1,4 @@
+SAGE_SPKG_CONFIGURE([palp], [
+ AC_PATH_PROG([PALP], [poly.x])
+ AS_IF([test -z "$ac_cv_path_PALP"], [sage_spkg_install_palp=yes])
+])
Index: math/sage/files/patch-bootstrap
===================================================================
--- math/sage/files/patch-bootstrap
+++ math/sage/files/patch-bootstrap
@@ -0,0 +1,13 @@
+--- bootstrap.orig 2020-05-08 20:11:43 UTC
++++ bootstrap
+@@ -98,7 +98,9 @@ SAGE_SPKG_CONFIGURE_$(echo ${pkgname} | tr '[a-z]' '[A
+ echo "$spkg_configures" >> m4/sage_spkg_configures.m4
+
+ SAGE_ROOT="$SAGE_ROOT" src/doc/bootstrap && \
+- install_config_rpath && \
++ install_config_rpath
++ exit
++ # Continue with FreeBSD autoreconf
+ aclocal -I m4 && \
+ automake --add-missing --copy build/make/Makefile-auto && \
+ autoconf
Index: math/sage/files/patch-build_bin_sage-apply-patches
===================================================================
--- math/sage/files/patch-build_bin_sage-apply-patches
+++ math/sage/files/patch-build_bin_sage-apply-patches
@@ -0,0 +1,11 @@
+--- build/bin/sage-apply-patches.orig 2020-01-01 11:03:10 UTC
++++ build/bin/sage-apply-patches
+@@ -67,7 +67,7 @@ if [[ -r "${patches[0]}" ]]; then
+ # Skip non-existing or non-readable patches
+ [ -r "$patch" ] || continue
+ echo "Applying $patch"
+- patch $patch_strip $patch_args < "$patch"
++ gpatch $patch_strip $patch_args < "$patch"
+ if [ $? -ne 0 ]; then
+ echo >&2 "Error applying '$patch'"
+ exit 1
Index: math/sage/files/patch-build_bin_sage-build-env-config.in
===================================================================
--- math/sage/files/patch-build_bin_sage-build-env-config.in
+++ math/sage/files/patch-build_bin_sage-build-env-config.in
@@ -0,0 +1,9 @@
+--- build/bin/sage-build-env-config.in.orig 2020-04-14 07:43:36 UTC
++++ build/bin/sage-build-env-config.in
+@@ -87,5 +87,6 @@ export SAGE_PARI_CFG="@SAGE_PARI_CFG@"
+
+ export SAGE_GLPK_PREFIX="@SAGE_GLPK_PREFIX@"
+ export SAGE_FREETYPE_PREFIX="@SAGE_FREETYPE_PREFIX@"
++export SAGE_SUITESPARSE_PREFIX="@SAGE_SUITESPARSE_PREFIX@"
+
+ export SAGE_CONFIGURE_FFLAS_FFPACK="@SAGE_CONFIGURE_FFLAS_FFPACK@"
Index: math/sage/files/patch-build_make_install
===================================================================
--- math/sage/files/patch-build_make_install
+++ math/sage/files/patch-build_make_install
@@ -0,0 +1,13 @@
+--- build/make/install.orig 2020-05-08 20:50:01 UTC
++++ build/make/install
+@@ -28,7 +28,9 @@ if [ -z "${SAGE_ORIG_PATH_SET}" ]; then
+ fi
+ export PATH="$SAGE_ROOT/build/bin:$SAGE_SRC/bin:$SAGE_LOCAL/bin:$PATH"
+
+-export PYTHONPATH="$SAGE_LOCAL"
++PYTHON_SITELIBDIR=`$PYTHON_FOR_VENV -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])'`
++REL_PYTHON_SITELIBDIR=`echo $PYTHON_SITELIBDIR | sed -e "s|$PYTHONBASE||"`
++export PYTHONPATH="$SAGE_LOCAL:$SAGE_LOCAL$REL_PYTHON_SITELIBDIR:$PYTHON_SITELIBDIR"
+
+ ###############################################################################
+ # Skip the rest if nothing to do (i.e., to [re]build).
Index: math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4
===================================================================
--- math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4
+++ math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4
@@ -0,0 +1,23 @@
+--- build/pkgs/cddlib/spkg-configure.m4.orig 2020-04-27 18:08:24 UTC
++++ build/pkgs/cddlib/spkg-configure.m4
+@@ -24,13 +24,13 @@ SAGE_SPKG_CONFIGURE([cddlib], [
+ dnl check, passing up a chance to detect cddlib on Fedora and Debian
+ dnl for now. Once all of cddlib's consumers know about the new (or
+ dnl both) locations, we can update this check to support them.
+- AC_CHECK_HEADER([cdd.h],[],[sage_spkg_install_cddlib=yes],[
+- #include <setoper.h>
+- #include <cddmp.h>
++ AC_CHECK_HEADER([cdd/cdd.h],[
++ dnl Both lattE and gfan try to link against libcddgmp (as
++ dnl opposed to libcdd).
++ AC_SEARCH_LIBS([dd_abs],[cddgmp],[],[sage_spkg_install_cddlib=yes])
++ ],[sage_spkg_install_cddlib=yes],[
++ #include <cdd/setoper.h>
++ #include <cdd/cddmp.h>
+ ])
+-
+- dnl Both lattE and gfan try to link against libcddgmp (as
+- dnl opposed to libcdd).
+- AC_SEARCH_LIBS([dd_abs],[cddgmp],[],[sage_spkg_install_cddlib=yes])
+ ])
+ ])
Index: math/sage/files/patch-build_pkgs_eclib_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_eclib_spkg-install
+++ math/sage/files/patch-build_pkgs_eclib_spkg-install
@@ -1,12 +0,0 @@
---- build/pkgs/eclib/spkg-install-orig 2015-04-15 23:32:22.643814000 +0000
-+++ build/pkgs/eclib/spkg-install 2015-04-15 23:33:02.634085000 +0000
-@@ -60,6 +60,9 @@
-
- echo
- echo "Now configuring eclib..."
-+aclocal
-+automake --add-missing
-+autoconf
- ./configure --prefix="$SAGE_LOCAL" \
- --with-ntl="$SAGE_LOCAL" \
- --with-pari="$SAGE_LOCAL" \
Index: math/sage/files/patch-build_pkgs_git_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_git_spkg-install
+++ math/sage/files/patch-build_pkgs_git_spkg-install
@@ -1,21 +0,0 @@
---- build/pkgs/git/spkg-install.orig 2015-05-17 22:46:55.000000000 +0000
-+++ build/pkgs/git/spkg-install 2015-05-24 22:10:32.517077000 +0000
-@@ -69,7 +69,8 @@
- --libexecdir="$SAGE_LOCAL"/libexec \
- --with-python="$SAGE_LOCAL"/bin/python \
- --without-tcltk \
-- --with-sane-tool-path=
-+ --with-sane-tool-path= \
-+ --with-perl=$PERL
- if [ $? -ne 0 ]; then
- echo >&2 "Error configuring git."
- exit 1
-@@ -77,7 +78,7 @@
-
-
- echo "Building git..."
--$MAKE $gettext
-+$MAKE PTHREAD_LIBS=-lpthread $gettext
- if [ $? -ne 0 ]; then
- echo >&2 "Error building git."
- exit 1
Index: math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4
===================================================================
--- math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4
+++ math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4
@@ -0,0 +1,18 @@
+--- build/pkgs/gsl/spkg-configure.m4.orig 2020-05-27 14:11:57 UTC
++++ build/pkgs/gsl/spkg-configure.m4
+@@ -2,15 +2,6 @@ SAGE_SPKG_CONFIGURE([gsl], [
+ m4_pushdef([SAGE_GSL_MINVER],["2.4"])
+ SAGE_SPKG_DEPCHECK([atlas openblas], [
+ PKG_CHECK_MODULES([GSL], [gsl >= $SAGE_GSL_MINVER], [
+- PKG_CHECK_VAR([GSLPCDIR], [gsl], [pcfiledir], [
+- GSL_PC="$GSLPCDIR"/gsl.pc
+- AC_SUBST([SAGE_SYSTEM_FACADE_PC_FILES])
+- AS_VAR_APPEND([SAGE_SYSTEM_FACADE_PC_FILES], [" \$(SAGE_PKGCONFIG)/gsl.pc"])
+- AC_SUBST([SAGE_GSL_PC_COMMAND],["\$(SED) -e 's/\$\${GSL_CBLAS_LIB}//' -e \"s/^GSL_CBLAS_LIB=.*/Requires: cblas/\" \"$GSL_PC\" > \"\$(@)\""])
+- ], [
+- AC_MSG_WARN([Unable to locate the directory of gsl.pc. This should not happen!])
+- sage_spkg_install_gsl=yes
+- ])
+ ], [sage_spkg_install_gsl=yes])
+ ])
+ m4_popdef([SAGE_GSL_MINVER])
Index: math/sage/files/patch-build_pkgs_iml_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_iml_spkg-install
+++ math/sage/files/patch-build_pkgs_iml_spkg-install
@@ -1,20 +0,0 @@
---- build/pkgs/iml/spkg-install-orig 2014-12-06 21:45:54.000000000 +0000
-+++ build/pkgs/iml/spkg-install 2014-12-06 21:50:08.000000000 +0000
-@@ -18,6 +18,7 @@
- fi
- done
-
-+export CFLAGS="-I${LOCALBASE}/include $CFLAGS"
-
- if [ "$SAGE_DEBUG" = "yes" ]; then
- echo "Building a debug version of IML."
-@@ -38,6 +39,9 @@
- EXTRA_BLAS="--with-cblas=-lcblas"
- fi
-
-+aclocal
-+automake --add-missing
-+autoconf
- ./configure --prefix="$SAGE_LOCAL" --libdir="$SAGE_LOCAL/lib" \
- --enable-shared --with-default="$SAGE_LOCAL" "$EXTRA_BLAS"
- if [ $? -ne 0 ]; then
Index: math/sage/files/patch-build_pkgs_libgap_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_libgap_spkg-install
+++ math/sage/files/patch-build_pkgs_libgap_spkg-install
@@ -1,12 +0,0 @@
---- build/pkgs/libgap/spkg-install-orig 2014-05-15 02:28:13.000000000 +0000
-+++ build/pkgs/libgap/spkg-install 2014-05-15 02:29:05.000000000 +0000
-@@ -42,6 +42,9 @@
- done
-
- echo "Configuring libGAP..."
-+aclocal
-+automake --add-missing
-+autoconf
- ./configure --disable-static \
- CFLAGS="$CFLAGS" CXXFLAGS="$CXXFLAGS" CPPFLAGS="$CPPFLAGS" \
- --with-gap_system_arch="$GAParch_system" \
Index: math/sage/files/patch-build_pkgs_m4rie_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_m4rie_spkg-install
+++ math/sage/files/patch-build_pkgs_m4rie_spkg-install
@@ -1,12 +0,0 @@
---- build/pkgs/m4rie/spkg-install-orig 2014-12-06 21:51:23.000000000 +0000
-+++ build/pkgs/m4rie/spkg-install 2014-12-06 21:51:46.000000000 +0000
-@@ -51,6 +51,9 @@
- # build M4RIE
-
- cd $ROOT_DIR/src/
-+aclocal
-+automake --add-missing
-+autoconf
- ./configure \
- --prefix="$SAGE_LOCAL" \
- --libdir="$SAGE_LOCAL/lib" \
Index: math/sage/files/patch-build_pkgs_maxima_fbsd-patch-src_interfaces_xmaxima_Makefile.in
===================================================================
--- math/sage/files/patch-build_pkgs_maxima_fbsd-patch-src_interfaces_xmaxima_Makefile.in
+++ math/sage/files/patch-build_pkgs_maxima_fbsd-patch-src_interfaces_xmaxima_Makefile.in
@@ -1,23 +0,0 @@
---- /dev/null 2014-01-29 03:00:00.000000000 +0000
-+++ build/pkgs/maxima/fbsd-patch-src_interfaces_xmaxima_Makefile.in 2014-01-29 03:01:19.000000000 +0000
-@@ -0,0 +1,20 @@
-+--- src/interfaces/xmaxima/Makefile.in-orig 2013-05-09 02:26:31.000000000 +0000
-++++ src/interfaces/xmaxima/Makefile.in 2013-05-09 02:30:12.000000000 +0000
-+@@ -624,14 +624,10 @@
-+ tclIndex:: $(TKSOURCES)
-+ echo "source ../ObjTcl/Object.tcl; auto_mkindex . $(TKSOURCES)" | $(TCLSH)
-+
-+-# Create Tkmaxima/tclIndex if tclsh is available. Otherwise, create empty file
-+-# to satisfy make.
-++# Create empty Tkmaxima/tclIndex, because attempting to create it using tclsh
-++# seems to soak up huge amounts of resources.
-+ Tkmaxima/tclIndex: $(TKSOURCES)
-+- $(TCLSH) < /dev/null > /dev/null 2>&1 && \
-+- (cd Tkmaxima ; \
-+- echo "source ../ObjTcl/Object.tcl; auto_mkindex . $(ALLFILES)" | \
-+- $(TCLSH)) || \
-+- touch Tkmaxima/tclIndex
-++ touch Tkmaxima/tclIndex
-+
-+ FORCE:
-+ # Tell versions [3.59,3.63) of GNU make to not export all variables.
Index: math/sage/files/patch-build_pkgs_maxima_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_maxima_spkg-install
+++ math/sage/files/patch-build_pkgs_maxima_spkg-install
@@ -1,11 +0,0 @@
---- build/pkgs/maxima/spkg-install-orig 2014-12-06 21:53:38.000000000 +0000
-+++ build/pkgs/maxima/spkg-install 2014-12-06 21:54:40.000000000 +0000
-@@ -51,6 +51,8 @@
- ./configure --prefix="$SAGE_LOCAL" --libdir="$SAGE_LOCAL/lib" --enable-ecl git_found=false
- check_error "Failed to configure Maxima."
-
-+# Remove extraneous spaces created in some of the flags passed to cc
-+sed -i.bak 's/" /"/' src/autoconf-variables.lisp
-
- # Touching html and info files to avoid to regenerate them.
- # This must be done after configuration since the timestamps need
Index: math/sage/files/patch-build_pkgs_ncurses_fbsd-patch-src_configure
===================================================================
--- math/sage/files/patch-build_pkgs_ncurses_fbsd-patch-src_configure
+++ math/sage/files/patch-build_pkgs_ncurses_fbsd-patch-src_configure
@@ -1,14 +0,0 @@
---- /dev/null 2014-01-29 03:00:00.000000000 +0000
-+++ build/pkgs/ncurses/fbsd-patch-src_configure 2014-01-29 03:01:19.000000000 +0000
-@@ -0,0 +1,11 @@
-+--- src/configure.orig 2013-08-21 02:51:59.000000000 +0000
-++++ src/configure 2013-08-21 02:53:23.000000000 +0000
-+@@ -5719,7 +5719,7 @@
-+ cf_cv_shared_soname='`basename $@`'
-+ fi
-+
-+- MK_SHARED_LIB='${LD} -shared -Bshareable -soname=`basename $@` -o $@'
-++ MK_SHARED_LIB='${CC} -shared -Bshareable -Wl,-soname=`basename $@` -o $@'
-+ ;;
-+ netbsd*) #(vi
-+ CC_SHARED_OPTS="$CC_SHARED_OPTS -DPIC"
Index: math/sage/files/patch-build_pkgs_numpy_fbsd-patch-src_numpy_distutils_system_info.py
===================================================================
--- math/sage/files/patch-build_pkgs_numpy_fbsd-patch-src_numpy_distutils_system_info.py
+++ math/sage/files/patch-build_pkgs_numpy_fbsd-patch-src_numpy_distutils_system_info.py
@@ -1,16 +0,0 @@
---- /dev/null 2014-01-29 03:00:00.000000000 +0000
-+++ build/pkgs/numpy/fbsd-patch-src_numpy_distutils_system_info.py 2014-01-29 03:01:19.000000000 +0000
-@@ -0,0 +1,13 @@
-+--- src/numpy/distutils/system_info.py.orig 2013-02-09 21:04:56.000000000 +0000
-++++ src/numpy/distutils/system_info.py 2013-05-27 21:51:12.000000000 +0000
-+@@ -983,8 +983,8 @@
-+ dir_env_var = 'ATLAS'
-+ _lib_names = ['f77blas', 'cblas']
-+ if sys.platform[:7] == 'freebsd':
-+- _lib_atlas = ['atlas_r']
-+- _lib_lapack = ['alapack_r']
-++ _lib_atlas = ['atlas']
-++ _lib_lapack = ['alapack']
-+ else:
-+ _lib_atlas = ['atlas']
-+ _lib_lapack = ['lapack']
Index: math/sage/files/patch-build_pkgs_ppl_fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c
===================================================================
--- math/sage/files/patch-build_pkgs_ppl_fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c
+++ math/sage/files/patch-build_pkgs_ppl_fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c
@@ -1,14 +0,0 @@
---- /dev/null 2014-01-29 03:00:00.000000000 +0000
-+++ build/pkgs/ppl/fbsd-patch-src_demos_ppl_lpsol_ppl_lpsol.c 2014-01-29 03:01:19.000000000 +0000
-@@ -0,0 +1,11 @@
-+--- src/demos/ppl_lpsol/ppl_lpsol.c.orig 2013-06-20 17:21:39.000000000 +0000
-++++ src/demos/ppl_lpsol/ppl_lpsol.c 2013-06-20 17:39:44.000000000 +0000
-+@@ -534,7 +534,7 @@
-+ if (getrlimit(RLIMIT_AS, &t) != 0)
-+ fatal("getrlimit failed: %s", strerror(errno));
-+
-+- if (bytes < t.rlim_cur) {
-++ if (bytes < (unsigned long)(t.rlim_cur)) {
-+ t.rlim_cur = bytes;
-+ if (setrlimit(RLIMIT_AS, &t) != 0)
-+ fatal("setrlimit failed: %s", strerror(errno));
Index: math/sage/files/patch-build_pkgs_ppl_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_ppl_spkg-install
+++ math/sage/files/patch-build_pkgs_ppl_spkg-install
@@ -1,13 +0,0 @@
---- build/pkgs/ppl/spkg-install-orig 2015-03-04 03:45:31.000000000 +0000
-+++ build/pkgs/ppl/spkg-install 2015-03-04 03:32:09.000000000 +0000
-@@ -36,6 +36,10 @@
- fi
- done
-
-+aclocal
-+automake --add-missing
-+autoconf
-+
- # Enable only what's needed for Sage
- PPL_CONFIGURE="--enable-coefficients=mpz --disable-fpmath $PPL_CONFIGURE"
-
Index: math/sage/files/patch-build_pkgs_pynac_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_pynac_spkg-install
+++ math/sage/files/patch-build_pkgs_pynac_spkg-install
@@ -1,15 +0,0 @@
---- build/pkgs/pynac/spkg-install.orig 2014-05-06 11:21:42.000000000 +0000
-+++ build/pkgs/pynac/spkg-install 2014-07-21 04:36:42.000000000 +0000
-@@ -31,8 +31,12 @@
-
- build_pynac()
- {
-+ chmod -R g-w ${PYNACDIR}
- cd ${PYNACDIR}
- PKG_CONFIG_PATH=${SAGE_LOCAL}/lib/pkgconfig; export PKG_CONFIG_PATH
-+ aclocal
-+ automake --add-missing
-+ autoconf
- ./configure --disable-static --prefix=${SAGE_LOCAL} --libdir="$SAGE_LOCAL/lib"
- $MAKE
- if [ $? -ne 0 ]; then
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Doc-library-fcntl.rst
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Doc-library-fcntl.rst
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Doc-library-fcntl.rst
@@ -1,13 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Doc__library__fcntl.rst 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,10 @@
-+--- src/./Doc/library/fcntl.rst.orig 2014-07-03 21:53:41.473098625 +1000
-++++ src/./Doc/library/fcntl.rst 2014-07-03 21:54:04.342833056 +1000
-+@@ -50,7 +50,6 @@
-+ operations are typically defined in the library module :mod:`termios` and the
-+ argument handling is even more complicated.
-+
-+- The op parameter is limited to values that can fit in 32-bits.
-+ Additional constants of interest for use as the *op* argument can be
-+ found in the :mod:`termios` module, under the same names as used in
-+ the relevant C header files.
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib__distutils__unixccompiler.py
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib__distutils__unixccompiler.py
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib__distutils__unixccompiler.py
@@ -1,18 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Lib__distutils__unixccompiler.py 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,15 @@
-+# Description: Some python extensions can't be compiled with clang 3.4
-+# Issue ID: http://bugs.python.org/issue20767
-+# Submitted by: antoine
-+
-+--- src/./Lib/distutils/unixccompiler.py.orig 2013-11-10 07:36:40.000000000 +0000
-++++ src/./Lib/distutils/unixccompiler.py 2014-02-19 15:41:48.000000000 +0000
-+@@ -228,6 +228,8 @@
-+ if sys.platform[:6] == "darwin":
-+ # MacOSX's linker doesn't understand the -R flag at all
-+ return "-L" + dir
-++ elif sys.platform[:7] == "freebsd":
-++ return "-Wl,-rpath=" + dir
-+ elif sys.platform[:5] == "hp-ux":
-+ if self._is_gcc(compiler):
-+ return ["-Wl,+s", "-L" + dir]
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib_distutils_command_build_scripts.py
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib_distutils_command_build_scripts.py
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Lib_distutils_command_build_scripts.py
@@ -1,20 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Lib_distutils_command_build_scripts.py 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,17 @@
-+# Description: A non-invasive partial backport of the Python3 distutils behaviour.
-+# This allows Python's scripts to be properly suffixed (similar to Python 3.x) on
-+# installation.
-+# Submitted by: mva
-+
-+--- src/Lib/distutils/command/build_scripts.py.orig 2014-07-26 11:52:20.000000000 +0200
-++++ src/Lib/distutils/command/build_scripts.py 2014-07-26 11:52:56.000000000 +0200
-+@@ -126,6 +126,9 @@
-+ file, oldmode, newmode)
-+ os.chmod(file, newmode)
-+
-++ # XXX should we modify self.outfiles?
-++ return outfiles
-++
-+ # copy_scripts ()
-+
-+ # class build_scripts
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Makefile.pre.in
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Makefile.pre.in
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Makefile.pre.in
@@ -1,21 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Makefile.pre.in 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,18 @@
-+# Description: Link scripts in the same way Python3 does
-+# Submitted by: mva
-+
-+--- src/Makefile.pre.in.orig 2014-06-30 04:05:39.000000000 +0200
-++++ src/Makefile.pre.in 2014-07-26 11:09:46.000000000 +0200
-+@@ -868,6 +868,12 @@
-+ (cd $(DESTDIR)$(LIBPC); $(LN) -s python-$(VERSION).pc python2.pc)
-+ -rm -f $(DESTDIR)$(LIBPC)/python.pc
-+ (cd $(DESTDIR)$(LIBPC); $(LN) -s python2.pc python.pc)
-++ -rm -f $(DESTDIR)$(BINDIR)/idle
-++ (cd $(DESTDIR)$(BINDIR); $(LN) -s idle$(VERSION) idle2)
-++ -rm -f $(DESTDIR)$(BINDIR)/pydoc
-++ (cd $(DESTDIR)$(BINDIR); $(LN) -s pydoc$(VERSION) pydoc2)
-++ -rm -f $(DESTDIR)$(BINDIR)/2to3
-++ (cd $(DESTDIR)$(BINDIR); $(LN) -s 2to3-$(VERSION) 2to3)
-+
-+ # Install the interpreter with $(VERSION) affixed
-+ # This goes into $(exec_prefix)
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-_ctypes-libffi-configure
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-_ctypes-libffi-configure
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-_ctypes-libffi-configure
@@ -1,25 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Modules-_ctypes-libffi-configure 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,22 @@
-+--- src/Modules/_ctypes/libffi/configure.orig 2010-03-19 19:59:20.000000000 +0100
-++++ src/Modules/_ctypes/libffi/configure 2011-03-06 09:20:16.000000000 +0100
-+@@ -6289,7 +6289,7 @@
-+ rm -rf conftest*
-+ ;;
-+
-+-x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \
-++amd64-*-freebsd*|x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \
-+ s390*-*linux*|s390*-*tpf*|sparc*-*linux*)
-+ # Find out which ABI we are using.
-+ echo 'int i;' > conftest.$ac_ext
-+@@ -11275,6 +11275,9 @@
-+ powerpc-*-freebsd*)
-+ TARGET=POWERPC_FREEBSD; TARGETDIR=powerpc
-+ ;;
-++ powerpc64-*-freebsd*)
-++ TARGET=POWERPC; TARGETDIR=powerpc
-++ ;;
-+ powerpc*-*-rtems*)
-+ TARGET=POWERPC; TARGETDIR=powerpc
-+ ;;
-+
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-fcntlmodule.c
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-fcntlmodule.c
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules-fcntlmodule.c
@@ -1,56 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Modules__fcntlmodule.c 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,53 @@
-+--- src/./Modules/fcntlmodule.c.orig 2014-07-03 21:57:10.429953240 +1000
-++++ src/./Modules/fcntlmodule.c 2014-07-03 21:59:36.517210444 +1000
-+@@ -98,20 +98,15 @@
-+ {
-+ #define IOCTL_BUFSZ 1024
-+ int fd;
-+- /* In PyArg_ParseTuple below, we use the unsigned non-checked 'I'
-++ /* In PyArg_ParseTuple below, we use the unsigned non-checked 'k'
-+ format for the 'code' parameter because Python turns 0x8000000
-+ into either a large positive number (PyLong or PyInt on 64-bit
-+ platforms) or a negative number on others (32-bit PyInt)
-+ whereas the system expects it to be a 32bit bit field value
-+ regardless of it being passed as an int or unsigned long on
-+- various platforms. See the termios.TIOCSWINSZ constant across
-+- platforms for an example of this.
-+-
-+- If any of the 64bit platforms ever decide to use more than 32bits
-+- in their unsigned long ioctl codes this will break and need
-+- special casing based on the platform being built on.
-++ various platforms.
-+ */
-+- unsigned int code;
-++ unsigned long code;
-+ int arg;
-+ int ret;
-+ char *str;
-+@@ -119,7 +114,7 @@
-+ int mutate_arg = 1;
-+ char buf[IOCTL_BUFSZ+1]; /* argument plus NUL byte */
-+
-+- if (PyArg_ParseTuple(args, "O&Iw#|i:ioctl",
-++ if (PyArg_ParseTuple(args, "O&kw#|i:ioctl",
-+ conv_descriptor, &fd, &code,
-+ &str, &len, &mutate_arg)) {
-+ char *arg;
-+@@ -170,7 +165,7 @@
-+ }
-+
-+ PyErr_Clear();
-+- if (PyArg_ParseTuple(args, "O&Is#:ioctl",
-++ if (PyArg_ParseTuple(args, "O&ks#:ioctl",
-+ conv_descriptor, &fd, &code, &str, &len)) {
-+ if (len > IOCTL_BUFSZ) {
-+ PyErr_SetString(PyExc_ValueError,
-+@@ -192,7 +187,7 @@
-+ PyErr_Clear();
-+ arg = 0;
-+ if (!PyArg_ParseTuple(args,
-+- "O&I|i;ioctl requires a file or file descriptor,"
-++ "O&k|i;ioctl requires a file or file descriptor,"
-+ " an integer and optionally an integer or buffer argument",
-+ conv_descriptor, &fd, &code, &arg)) {
-+ return NULL;
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c
@@ -1,39 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_Modules___ctypes__libffi__src__arm__ffi.c 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,36 @@
-+# Description: Fix _ctypes abort on import for FreeBSD/ARM. This is an issue
-+# for anything !apple that is using the libcompiler_rt provided by clang on arm
-+# PR: ports/149167 ports/184517
-+# Patch by: cognet@ (to be upstreamed @ LLVM)
-+
-+--- src/./Modules/_ctypes/libffi/src/arm/ffi.c.orig 2013-11-10 18:36:41.000000000 +1100
-++++ src/./Modules/_ctypes/libffi/src/arm/ffi.c 2013-12-03 18:05:51.461078888 +1100
-+@@ -33,6 +33,11 @@
-+
-+ #include <stdlib.h>
-+
-++#if defined(__FreeBSD__) && defined(__arm__)
-++#include <sys/types.h>
-++#include <machine/sysarch.h>
-++#endif
-++
-+ /* Forward declares. */
-+ static int vfp_type_p (ffi_type *);
-+ static void layout_vfp_args (ffi_cif *);
-+@@ -582,6 +587,16 @@
-+
-+ #else
-+
-++#if defined(__FreeBSD__) && defined(__arm__)
-++#define __clear_cache(start, end) do { \
-++ struct arm_sync_icache_args ua; \
-++ \
-++ ua.addr = (uintptr_t)(start); \
-++ ua.len = (char *)(end) - (char *)start; \
-++ sysarch(ARM_SYNC_ICACHE, &ua); \
-++ } while (0);
-++#endif
-++
-+ #define FFI_INIT_TRAMPOLINE(TRAMP,FUN,CTX) \
-+ ({ unsigned char *__tramp = (unsigned char*)(TRAMP); \
-+ unsigned int __fun = (unsigned int)(FUN); \
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_issue21166
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_issue21166
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_issue21166
@@ -1,77 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_issue21166 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,74 @@
-+# HG changeset patch
-+# User Ned Deily <nad@acm.org>
-+# Date 1408739459 25200
-+# Node ID edb6b282469ea0e8f819d0310afb2937b59dd6b9
-+# Parent 727fd4ead3fd854e900ed89362714ad1f7434e5a
-+Issue #21166: Prevent possible segfaults and other random failures of
-+python --generate-posix-vars in pybuilddir.txt build target by ensuring
-+that pybuilddir.txt is always regenerated when configure is run and
-+that the newly built skeleton python does not inadvertently import
-+modules from previously installed instances.
-+
-+diff --git a/Makefile.pre.in b/Makefile.pre.in
-+--- src/Makefile.pre.in
-++++ src/Makefile.pre.in
-+@@ -447,8 +447,18 @@ platform: $(BUILDPYTHON) pybuilddir.txt
-+ # Create build directory and generate the sysconfig build-time data there.
-+ # pybuilddir.txt contains the name of the build dir and is used for
-+ # sys.path fixup -- see Modules/getpath.c.
-++# Since this step runs before shared modules are built, try to avoid bootstrap
-++# problems by creating a dummy pybuildstr.txt just to allow interpreter
-++# initialization to succeed. It will be overwritten by generate-posix-vars
-++# or removed in case of failure.
-+ pybuilddir.txt: $(BUILDPYTHON)
-+- $(RUNSHARED) $(PYTHON_FOR_BUILD) -S -m sysconfig --generate-posix-vars
-++ @echo "none" > ./pybuilddir.txt
-++ $(RUNSHARED) $(PYTHON_FOR_BUILD) -S -m sysconfig --generate-posix-vars ;\
-++ if test $$? -ne 0 ; then \
-++ echo "generate-posix-vars failed" ; \
-++ rm -f ./pybuilddir.txt ; \
-++ exit 1 ; \
-++ fi
-+
-+ # Build the shared modules
-+ # Under GNU make, MAKEFLAGS are sorted and normalized; the 's' for
-+diff --git a/Misc/NEWS b/Misc/NEWS
-+--- src/Misc/NEWS
-++++ src/Misc/NEWS
-+@@ -120,6 +120,9 @@ Build
-+ - Issue #15759: "make suspicious", "make linkcheck" and "make doctest" in Doc/
-+ now display special message when and only when there are failures.
-+
-++- Issue #21166: Prevent possible segfaults and other random failures of
-++ python --generate-posix-vars in pybuilddir.txt build target.
-++
-+ Windows
-+ -------
-+
-+diff --git a/configure b/configure
-+--- src/configure
-++++ src/configure
-+@@ -2857,6 +2857,9 @@ case $host_os in *\ *) host_os=`echo "$h
-+
-+
-+
-++# pybuilddir.txt will be created by --generate-posix-vars in the Makefile
-++rm -f pybuilddir.txt
-++
-+ if test "$cross_compiling" = yes; then
-+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for python interpreter for cross build" >&5
-+ $as_echo_n "checking for python interpreter for cross build... " >&6; }
-+diff --git a/configure.ac b/configure.ac
-+--- src/configure.ac
-++++ src/configure.ac
-+@@ -16,6 +16,9 @@ AC_CANONICAL_HOST
-+ AC_SUBST(build)
-+ AC_SUBST(host)
-+
-++# pybuilddir.txt will be created by --generate-posix-vars in the Makefile
-++rm -f pybuilddir.txt
-++
-+ if test "$cross_compiling" = yes; then
-+ AC_MSG_CHECKING([for python interpreter for cross build])
-+ if test -z "$PYTHON_FOR_BUILD"; then
-+
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_pr192365
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_pr192365
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_pr192365
@@ -1,61 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_pr192365 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,58 @@
-+# Description: do not define __BSD_VISIBLE/_XOPEN_SOURCE/_POSIX_C_SOURCE
-+# in include/python2.7/pyconfig.h
-+# Submitted by: antoine
-+
-+--- src/configure.orig 2014-09-06 14:42:50 UTC
-++++ src/configure
-+@@ -2919,13 +2919,6 @@
-+
-+
-+ # The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables
-+-# certain features on FreeBSD, so we need __BSD_VISIBLE to re-enable
-+-# them.
-+-
-+-$as_echo "#define __BSD_VISIBLE 1" >>confdefs.h
-+-
-+-
-+-# The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables
-+ # u_int on Irix 5.3. Defining _BSD_TYPES brings it back.
-+
-+ $as_echo "#define _BSD_TYPES 1" >>confdefs.h
-+@@ -3293,9 +3286,8 @@
-+ # but used in struct sockaddr.sa_family. Reported by Tim Rice.
-+ SCO_SV/3.2)
-+ define_xopen_source=no;;
-+- # On FreeBSD 4, the math functions C89 does not cover are never defined
-+- # with _XOPEN_SOURCE and __BSD_VISIBLE does not re-enable them.
-+- FreeBSD/4.*)
-++ # On FreeBSD, defining _XOPEN_SOURCE to 600 requests a strict environment.
-++ FreeBSD/*)
-+ define_xopen_source=no;;
-+ # On MacOS X 10.2, a bug in ncurses.h means that it craps out if
-+ # _XOPEN_EXTENDED_SOURCE is defined. Apparently, this is fixed in 10.3, which
-+--- src/configure.ac.orig 2014-09-06 14:42:50 UTC
-++++ src/configure.ac
-+@@ -88,11 +88,6 @@
-+ AC_DEFINE(_NETBSD_SOURCE, 1, [Define on NetBSD to activate all library features])
-+
-+ # The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables
-+-# certain features on FreeBSD, so we need __BSD_VISIBLE to re-enable
-+-# them.
-+-AC_DEFINE(__BSD_VISIBLE, 1, [Define on FreeBSD to activate all library features])
-+-
-+-# The later defininition of _XOPEN_SOURCE and _POSIX_C_SOURCE disables
-+ # u_int on Irix 5.3. Defining _BSD_TYPES brings it back.
-+ AC_DEFINE(_BSD_TYPES, 1, [Define on Irix to enable u_int])
-+
-+@@ -426,9 +421,8 @@
-+ # but used in struct sockaddr.sa_family. Reported by Tim Rice.
-+ SCO_SV/3.2)
-+ define_xopen_source=no;;
-+- # On FreeBSD 4, the math functions C89 does not cover are never defined
-+- # with _XOPEN_SOURCE and __BSD_VISIBLE does not re-enable them.
-+- FreeBSD/4.*)
-++ # On FreeBSD, defining _XOPEN_SOURCE to 600 requests a strict environment.
-++ FreeBSD/*)
-+ define_xopen_source=no;;
-+ # On MacOS X 10.2, a bug in ncurses.h means that it craps out if
-+ # _XOPEN_EXTENDED_SOURCE is defined. Apparently, this is fixed in 10.3, which
Index: math/sage/files/patch-build_pkgs_python_fbsd-patch-src_setup.py
===================================================================
--- math/sage/files/patch-build_pkgs_python_fbsd-patch-src_setup.py
+++ math/sage/files/patch-build_pkgs_python_fbsd-patch-src_setup.py
@@ -1,33 +0,0 @@
---- /dev/null 2014-11-18 03:33:07.000000000 +0000
-+++ build/pkgs/python/fbsd-patch-src_setup.py 2014-11-18 03:37:12.000000000 +0000
-@@ -0,0 +1,30 @@
-+# Description: SEM option patch. If SEM is enabled, enable the build properly
-+# Not upstreamed
-+
-+--- src/setup.py.orig 2013-04-07 11:07:43.000000000 +0400
-++++ src/setup.py 2013-04-07 11:16:36.000000000 +0400
-+@@ -1551,10 +1551,22 @@
-+ macros = dict()
-+ libraries = []
-+
-+- elif host_platform in ('freebsd4', 'freebsd5', 'freebsd6', 'freebsd7', 'freebsd8'):
-++ elif host_platform in ('freebsd4', 'freebsd5', 'freebsd6'):
-+ # FreeBSD's P1003.1b semaphore support is very experimental
-+ # and has many known problems. (as of June 2008)
-+- macros = dict()
-++ macros = dict( # FreeBSD 4-6
-++ HAVE_SEM_OPEN=0,
-++ HAVE_SEM_TIMEDWAIT=0,
-++ HAVE_FD_TRANSFER=1,
-++ )
-++ libraries = []
-++
-++ elif host_platform in ('freebsd7', 'freebsd8', 'freebsd9', 'freebsd10', 'freebsd11'):
-++ macros = dict( # FreeBSD 7+
-++ HAVE_SEM_OPEN=1,
-++ HAVE_SEM_TIMEDWAIT=1,
-++ HAVE_FD_TRANSFER=1,
-++ )
-+ libraries = []
-+
-+ elif host_platform.startswith('openbsd'):
Index: math/sage/files/patch-build_pkgs_scons_fbsd-patch-src_engine_SCons_compat__scons_subprocess.py
===================================================================
--- math/sage/files/patch-build_pkgs_scons_fbsd-patch-src_engine_SCons_compat__scons_subprocess.py
+++ math/sage/files/patch-build_pkgs_scons_fbsd-patch-src_engine_SCons_compat__scons_subprocess.py
@@ -1,34 +0,0 @@
---- /dev/null 2014-02-05 05:15:00.000000000 +0000
-+++ build/pkgs/scons/fbsd-patch-src_engine_SCons_compat__scons_subprocess.py 2014-02-05 05:16:45.000000000 +0000
-@@ -0,0 +1,31 @@
-+--- src/engine/SCons/compat/_scons_subprocess.py.orig 2008-12-21 06:59:59.000000000 +0000
-++++ src/engine/SCons/compat/_scons_subprocess.py 2014-02-05 05:11:11.000000000 +0000
-+@@ -585,13 +585,19 @@
-+ class object:
-+ pass
-+
-++import thread
-++lock = thread.allocate_lock()
-++
-+ class Popen(object):
-+ def __init__(self, args, bufsize=0, executable=None,
-+ stdin=None, stdout=None, stderr=None,
-+ preexec_fn=None, close_fds=False, shell=False,
-+ cwd=None, env=None, universal_newlines=False,
-+ startupinfo=None, creationflags=0):
-+- """Create new Popen instance."""
-++ """Create new Popen instance.
-++ Popen is not thread-safe and is therefore protected with a lock.
-++ """
-++ lock.acquire()
-+ _cleanup()
-+
-+ self._child_created = False
-+@@ -659,6 +665,7 @@
-+ self.stderr = os.fdopen(errread, 'rU', bufsize)
-+ else:
-+ self.stderr = os.fdopen(errread, 'rb', bufsize)
-++ lock.release()
-+
-+
-+ def _translate_newlines(self, data):
Index: math/sage/files/patch-build_pkgs_sympow_fbsd-patch-src_disk.c
===================================================================
--- math/sage/files/patch-build_pkgs_sympow_fbsd-patch-src_disk.c
+++ math/sage/files/patch-build_pkgs_sympow_fbsd-patch-src_disk.c
@@ -1,14 +0,0 @@
---- /dev/null 2014-01-29 03:00:00.000000000 +0000
-+++ build/pkgs/sympow/fbsd-patch-src_disk.c 2014-01-29 03:01:19.000000000 +0000
-@@ -0,0 +1,11 @@
-+--- src/disk.c-orig 2012-04-19 02:33:51.000000000 +0000
-++++ src/disk.c 2012-04-19 02:34:22.000000000 +0000
-+@@ -39,7 +39,7 @@
-+ else if (((sp&3)==0) && CM_CASE) {if (2*ep==sp) S[3]='l'; else S[3]='h';}
-+ else {if (2*ep==sp) S[3]='L'; else S[3]='H';}
-+ if (HECKE && dv) {TACKS[which]=malloc(dv*sizeof(QD)); TACKON[which]=dv;}
-+- else if (dv<=sp/2) TACKON[which]=0;
-++ else if (dv<=sp/2) {TACKS[which]=NULL; TACKON[which]=0;}
-+ else {TACKS[which]=malloc((dv-sp/2)*sizeof(QD)); TACKON[which]=dv-sp/2;}
-+ S[4]=0; F=fopen("datafiles/param_data","r"); strcpy(U,S);
-+ if (ANAL_RANK) {if (dv>0) U[0]='A'; else U[0]='m';}
Index: math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch
===================================================================
--- math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch
+++ math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch
@@ -0,0 +1,542 @@
+--- build/pkgs/tachyon/patches/Make-arch.patch.orig 2020-01-01 11:03:10 UTC
++++ build/pkgs/tachyon/patches/Make-arch.patch
+@@ -10,7 +10,15 @@
+
+ # MPI path setup, probably shouldn't need to be changed.
+ MPIINC=$(MPIDIR)/include
+-@@ -23,7 +24,8 @@ default:
++@@ -16,14 +17,15 @@
++ MISCDEFS=$(USEJPEG) $(USEPNG) $(FLT) $(MBOX)
++ MISCINC=$(JPEGINC) $(PNGINC) $(SPACEBALLINC)
++ MISCFLAGS=$(MISCDEFS) $(MISCINC)
++-MISCLIB=$(JPEGLIB) $(PNGLIB) $(SPACEBALLLIB)
+++MISCLIB=%%LDFLAGS%% $(JPEGLIB) $(PNGLIB) $(SPACEBALLLIB)
++
++ default:
++ @echo " Choose one of the architectures specified below."
+ @echo "--------------------------------------------------------------"
+ @echo " Parallel Versions "
+ @echo ""
+@@ -20,7 +28,7 @@
+ @echo " aix-64-thr - IBM AIX 5.x POSIX Threads, 64-bit "
+ @echo " aix-mpi - IBM AIX 5.x (SP) MPI "
+ @echo " asci-red-mpi - Intel ASCI Red MPI "
+-@@ -32,11 +34,12 @@ default:
++@@ -32,11 +34,12 @@
+ @echo " cray-t3e-mpi - Cray T3E MPI "
+ @echo " cray-xt3-mpi - Cray XT3 MPI "
+ @echo " compaq-alphasc-mpi - Lemieux at PSC MPI "
+@@ -34,7 +42,7 @@
+ @echo " linux-alpha-ccc-qsw - Linux Alpha, Compaq C, MPI, QSWnet "
+ @echo " linux-lam - Linux MPI (OSC LAM) "
+ @echo " linux-lam-64 - Linux AMD64/EM64T, MPI, 64-bit "
+-@@ -48,13 +51,14 @@ default:
++@@ -48,13 +51,14 @@
+ @echo "linux-ia64-thr-sgicc - Linux IA-64, SGI Pro64 Compilers "
+ @echo " macosx-thr - MacOS X PowerPC, POSIX Threads "
+ @echo " macosx-x86-thr - MacOS X Intel x86, POSIX Threads "
+@@ -56,7 +64,7 @@
+ @echo "--------------------------------------------------------------"
+ @echo " Hybrid Parallel Versions "
+ @echo ""
+-@@ -63,9 +67,11 @@ default:
++@@ -63,9 +67,11 @@
+ @echo "--------------------------------------------------------------"
+ @echo " Sequential Versions "
+ @echo ""
+@@ -70,7 +78,7 @@
+ @echo " irix6 - SGI Irix 6.x "
+ @echo " linux - Linux "
+ @echo " linux-64 - Linux, AMD64/EM64T, GCC 3.x, 64-bit "
+-@@ -102,7 +108,7 @@ default:
++@@ -102,7 +108,7 @@
+ @echo "Consult the README file in this directory for further info. "
+
+ ##
+@@ -79,7 +87,7 @@
+ ## No pthreads on ASCI Red yet. I didn't bother with the cop() stuff
+ ##
+ asci-red-mpi:
+-@@ -118,7 +124,7 @@ asci-red-mpi:
++@@ -118,7 +124,7 @@
+
+ ##
+ ## IBM Blue Gene/L Parallel Supercomputer
+@@ -88,7 +96,7 @@
+ ## NOTE: strip breaks bluegene executables, they are dynamically re-linked
+ ## at runtime, so we must use /bin/true rather than strip
+ ##
+-@@ -137,7 +143,7 @@ bluegene-mpi:
++@@ -137,7 +143,7 @@
+ ## Cray Parallel Vector Processor Machines Using Threads
+ ##
+ ## Tested on J90s, but should work on almost any of the Cray PVP systems.
+@@ -97,7 +105,7 @@
+ ## off running on a fast workstation, or even better, on a T3E!!!
+ ##
+ cray-thr:
+-@@ -228,7 +234,7 @@ cray-xt3-mpi:
++@@ -228,7 +234,7 @@
+ ##
+ ## Architecture flags for the Intel Paragon XP/S Supercomputer using MPI
+ ## for message passing. NX is no longer supported by this software.
+@@ -106,7 +114,7 @@
+ ## Concurrent I/O is used by default.
+ ##
+
+-@@ -264,8 +270,8 @@ paragon-mpi:
++@@ -264,8 +270,8 @@
+
+
+ ##
+@@ -117,7 +125,7 @@
+ ## Tested with the mpich distribution from Argonne National Labs
+ ##
+
+-@@ -277,7 +283,7 @@ ipsc860-mpi:
++@@ -277,7 +283,7 @@
+ "AR = ar860" \
+ "ARFLAGS = r" \
+ "STRIP = strip860" \
+@@ -126,7 +134,7 @@
+
+ ipsc860-mpi-debug:
+ $(MAKE) all \
+-@@ -287,7 +293,7 @@ ipsc860-mpi-debug:
++@@ -287,7 +293,7 @@
+ "AR = ar860" \
+ "ARFLAGS = r" \
+ "STRIP = touch " \
+@@ -135,7 +143,7 @@
+
+
+ ##
+-@@ -296,22 +302,18 @@ ipsc860-mpi-debug:
++@@ -296,22 +302,18 @@
+ tru64-alpha:
+ $(MAKE) all \
+ "ARCH = tru64-alpha" \
+@@ -159,7 +167,7 @@
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+-@@ -319,9 +321,7 @@ tru64-alpha-thr:
++@@ -319,9 +321,7 @@
+ tru64-alpha-thr-ogl:
+ $(MAKE) all \
+ "ARCH = tru64-alpha-thr-ogl" \
+@@ -169,7 +177,7 @@
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ "LIBS = -L. -ltachyon $(TRU64_GLX_LIBS) $(MISCLIB) -lm"
+-@@ -448,7 +448,7 @@ solaris-ultra-hpc:
++@@ -448,7 +448,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -178,7 +186,7 @@
+
+ solaris-mpi:
+ $(MAKE) all \
+-@@ -458,7 +458,7 @@ solaris-mpi:
++@@ -458,7 +458,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -187,25 +195,29 @@
+
+ solaris-thr:
+ $(MAKE) all \
+-@@ -473,9 +473,15 @@ solaris-thr:
++@@ -473,13 +473,19 @@
+ solaris-pthreads-gcc:
+ $(MAKE) all \
+ "ARCH = solaris-pthreads-gcc" \
+ - "CC = gcc" \
+ "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -D_REENTRANT -DSunOS $(MISCFLAGS) -DTHR -DUSEPOSIXTHREADS" \
+ - "AR = ar" \
+-+ "ARFLAGS = r" \
+-+ "STRIP = strip" \
+-+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+-+
++ "ARFLAGS = r" \
++ "STRIP = strip" \
++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
++
+ +solaris-pthreads-gcc-64-bit:
+ + $(MAKE) all \
+ + "ARCH = solaris-pthreads-gcc" \
+ + "CFLAGS = -Wall -O4 -m64 -fomit-frame-pointer -ffast-math -D_REENTRANT -DSunOS $(MISCFLAGS) -DTHR -DUSEPOSIXTHREADS" \
+- "ARFLAGS = r" \
+- "STRIP = strip" \
+- "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+-@@ -618,7 +624,7 @@ solaris-ultra-hpc-ogl:
+++ "ARFLAGS = r" \
+++ "STRIP = strip" \
+++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+++
++ solaris-thr-x11:
++ $(MAKE) all \
++ "ARCH = solaris-thr-x11" \
++@@ -618,7 +624,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -214,7 +226,7 @@
+
+ solaris-ultra-pthreads-ogl:
+ $(MAKE) all \
+-@@ -643,9 +649,7 @@ solaris-apcc-ultra-thr:
++@@ -643,9 +649,7 @@
+ solaris-gcc-thr:
+ $(MAKE) all \
+ "ARCH = solaris-gcc-thr" \
+@@ -224,7 +236,7 @@
+ "ARFLAGS = r" \
+ "STRIP = touch" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lsocket -lthread"
+-@@ -653,9 +657,7 @@ solaris-gcc-thr:
++@@ -653,9 +657,7 @@
+ solaris-gcc-thr-x11:
+ $(MAKE) all \
+ "ARCH = solaris-gcc-thr-x11" \
+@@ -234,7 +246,7 @@
+ "ARFLAGS = r" \
+ "STRIP = touch" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lsocket $(X11LIB) -lthread"
+-@@ -701,7 +703,7 @@ irix5-mpi:
++@@ -701,7 +703,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -243,7 +255,7 @@
+
+ irix5:
+ $(MAKE) all \
+-@@ -710,7 +712,7 @@ irix5:
++@@ -710,7 +712,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -252,7 +264,7 @@
+
+ irix6:
+ $(MAKE) all \
+-@@ -719,7 +721,7 @@ irix6:
++@@ -719,7 +721,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -261,7 +273,7 @@
+
+ irix6-purify:
+ $(MAKE) all \
+-@@ -738,7 +740,7 @@ irix6-64-thr:
++@@ -738,7 +740,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -270,7 +282,7 @@
+
+ irix6-thr:
+ $(MAKE) all \
+-@@ -747,7 +749,7 @@ irix6-thr:
++@@ -747,7 +749,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -279,7 +291,7 @@
+
+ irix6-thr-purify:
+ $(MAKE) all \
+-@@ -766,7 +768,7 @@ irix6-thr-ogl:
++@@ -766,7 +768,7 @@
+ "AR = ar" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+@@ -288,7 +300,7 @@
+
+
+ ##
+-@@ -776,6 +778,8 @@ irix6-thr-ogl:
++@@ -776,6 +778,8 @@
+ ## available yet, since access to a thread capable test machine is needed
+ ## for implementation. These configurations require xlc.
+ ##
+@@ -297,7 +309,7 @@
+
+
+ aix:
+-@@ -788,6 +792,19 @@ aix:
++@@ -788,6 +792,19 @@
+ "STRIP = strip" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+@@ -317,7 +329,7 @@
+ aix-mpi:
+ $(MAKE) all \
+ "ARCH = aix-mpi" \
+-@@ -808,6 +825,19 @@ aix-thr:
++@@ -808,6 +825,19 @@
+ "STRIP = strip" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+
+@@ -337,7 +349,7 @@
+ aix-64-thr:
+ $(MAKE) all \
+ "ARCH = aix-64-thr" \
+-@@ -836,6 +866,32 @@ hpux:
++@@ -836,6 +866,32 @@
+ "STRIP = strip" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+@@ -370,7 +382,7 @@
+ hpux-thr:
+ $(MAKE) all \
+ "ARCH = hpux-thr" \
+-@@ -867,67 +923,57 @@ hpux-ia64-thr:
++@@ -867,67 +923,57 @@
+ next:
+ $(MAKE) all \
+ "ARCH = next" \
+@@ -391,16 +403,16 @@
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ - "RANLIB = ranlib" \
+-+ "LIBS = -L. -ltachyon $(MISCLIB)"
+-+
++ "LIBS = -L. -ltachyon $(MISCLIB)"
++
+ +macosx-64:
+ + $(MAKE) all \
+ + "ARCH = macosx" \
+ + "CFLAGS = -Os -m64 -ffast-math -DBsd $(MISCFLAGS)" \
+ + "ARFLAGS = r" \
+ + "STRIP = strip" \
+- "LIBS = -L. -ltachyon $(MISCLIB)"
+-
+++ "LIBS = -L. -ltachyon $(MISCLIB)"
+++
+ macosx-thr:
+ $(MAKE) all \
+ "ARCH = macosx-thr" \
+@@ -446,7 +458,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lpthread -L/usr/X11R6/lib -lGLU -lGL -lX11 -framework Carbon"
+
+
+-@@ -938,12 +984,9 @@ macosx-x86-thr-ogl:
++@@ -938,12 +984,9 @@
+ beos:
+ $(MAKE) all \
+ "ARCH = beos" \
+@@ -459,13 +471,14 @@
+ "LIBS = -L. -ltachyon $(MISCLIB)"
+
+ ##
+-@@ -954,23 +997,17 @@ beos:
++@@ -954,23 +997,17 @@
+ bsd:
+ $(MAKE) all \
+ "ARCH = bsd" \
+ - "CC = gcc" \
+- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \
++- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \
+ - "AR = ar" \
+++ "CFLAGS = %%CFLAGS%% -DBsd $(MISCFLAGS)" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ - "RANLIB = ranlib" \
+@@ -475,15 +488,16 @@
+ $(MAKE) all \
+ "ARCH = bsd-sparc" \
+ - "CC = gcc" \
+- "CFLAGS = -mv8 -msupersparc -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \
++- "CFLAGS = -mv8 -msupersparc -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \
+ - "AR = ar" \
+++ "CFLAGS = -mv8 -msupersparc %%CFLAGS%% -DBsd $(MISCFLAGS)" \
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ - "RANLIB = ranlib" \
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+ ##
+-@@ -980,23 +1017,17 @@ bsd-sparc:
++@@ -980,23 +1017,17 @@
+ win32:
+ $(MAKE) all \
+ "ARCH = win32" \
+@@ -509,7 +523,7 @@
+ "LIBS = -L. -L'/Program files/MPIPro/LIB' -ltachyon -lmpi $(MISCLIB) -lm"
+
+ ##
+-@@ -1007,60 +1038,45 @@ win32-mpi:
++@@ -1007,60 +1038,45 @@
+ linux:
+ $(MAKE) all \
+ "ARCH = linux" \
+@@ -570,7 +584,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+
+-@@ -1068,12 +1084,9 @@ linux-64-debug:
++@@ -1068,12 +1084,9 @@
+ linux-64-thr:
+ $(MAKE) all \
+ "ARCH = linux-64-thr" \
+@@ -583,7 +597,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+
+
+-@@ -1081,17 +1094,14 @@ linux-64-thr:
++@@ -1081,17 +1094,14 @@
+ linux-p4:
+ $(MAKE) all \
+ "ARCH = linux-p4" \
+@@ -603,7 +617,7 @@
+ linux-p4-icc:
+ $(MAKE) all \
+ "ARCH = linux-p4-icc" \
+-@@ -1119,23 +1129,17 @@ linux-p4-icc-thr:
++@@ -1119,23 +1129,17 @@
+ linux-athlon:
+ $(MAKE) all \
+ "ARCH = linux-athlon" \
+@@ -627,7 +641,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+
+
+-@@ -1167,21 +1171,25 @@ linux-athlon-pgcc:
++@@ -1167,21 +1171,25 @@
+ linux-thr:
+ $(MAKE) all \
+ "ARCH = linux-thr" \
+@@ -637,8 +651,8 @@
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ - "RANLIB = ranlib" \
+-+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+-+
++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
++
+ +# Linux Arm using gcc, with threads
+ +linux-arm-thr:
+ + $(MAKE) all \
+@@ -646,8 +660,8 @@
+ + "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -DLinux -DTHR -D_REENTRANT $(MISCFLAGS)" \
+ + "ARFLAGS = r" \
+ + "STRIP = strip" \
+- "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+-
+++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+++
+ # Linux x86 using gcc, threads, and OpenGL
+ linux-thr-ogl:
+ $(MAKE) all \
+@@ -658,7 +672,7 @@
+ "ARFLAGS = r" \
+ "STRIP = touch" \
+ "LIBS = -L. -ltachyon $(MISCLIB) $(LINUX_GLX_LIBS) $(MISCLIB) -lm -lpthread"
+-@@ -1190,24 +1198,18 @@ linux-thr-ogl:
++@@ -1190,24 +1198,18 @@
+ linux-beowulf-mpi-ogl:
+ $(MAKE) all \
+ "ARCH = linux-beowulf-mpi" \
+@@ -683,7 +697,7 @@
+ "LIBS = -L. -ltachyon -lmpi $(MISCLIB) -lm"
+
+ # Linux x86 using LAM MPI
+-@@ -1239,10 +1241,8 @@ linux-mpi:
++@@ -1239,10 +1241,8 @@
+ "ARCH = linux-mpi" \
+ "CC = mpicc" \
+ "CFLAGS = -DLinux -DMPI $(MISCFLAGS)" \
+@@ -694,7 +708,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+ linux-mpi-thr:
+-@@ -1250,10 +1250,8 @@ linux-mpi-thr:
++@@ -1250,10 +1250,8 @@
+ "ARCH = linux-mpi-thr" \
+ "CC = mpicc" \
+ "CFLAGS = -DLinux -DMPI -DTHR $(MISCFLAGS)" \
+@@ -705,7 +719,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+
+ linux-mpi-64:
+-@@ -1261,10 +1259,8 @@ linux-mpi-64:
++@@ -1261,10 +1259,8 @@
+ "ARCH = linux-mpi-64" \
+ "CC = mpicc" \
+ "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -I$(LAMHOME)/h -DLinux -DMPI -DLP64 $(MISCFLAGS)" \
+@@ -716,7 +730,7 @@
+ "LIBS = -L. -L$(LAMHOME)/lib -ltachyon $(MISCLIB) -lm"
+
+
+-@@ -1297,48 +1293,36 @@ linux-lam-thr:
++@@ -1297,48 +1293,36 @@
+ linux-ipaq:
+ $(MAKE) all \
+ "ARCH = linux-ipaq" \
+@@ -768,7 +782,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+ # Linux Alpha using Compaq's compilers
+-@@ -1369,12 +1353,9 @@ linux-alpha-ccc-qsw:
++@@ -1369,12 +1353,9 @@
+ linux-ia64:
+ $(MAKE) all \
+ "ARCH = linux-ia64" \
+@@ -782,7 +796,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm"
+
+ # Linux IA-64 using SGI compilers (Merced, Itanium, McKinley, etc)
+-@@ -1393,12 +1374,9 @@ linux-ia64-sgicc:
++@@ -1393,12 +1374,9 @@
+ linux-ia64-thr:
+ $(MAKE) all \
+ "ARCH = linux-ia64-thr" \
+@@ -796,7 +810,7 @@
+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread"
+
+ # Linux IA-64 using SGI compilers and threads (Merced, Itanium, McKinley, etc)
+-@@ -1421,9 +1399,7 @@ linux-ia64-thr-sgicc:
++@@ -1421,9 +1399,7 @@
+ sgi-altix-mpi:
+ $(MAKE) all \
+ "ARCH = sgi-altix-mpi" \
+@@ -806,7 +820,7 @@
+ "ARFLAGS = r" \
+ "STRIP = strip" \
+ "LIBS = -ltachyon -lmpi $(MISCLIB) -lm "
+-@@ -1432,7 +1408,7 @@ sgi-altix-mpi:
++@@ -1432,7 +1408,7 @@
+ ## CSPI PowerPC Based Multicomputers Running VXWORKS
+ ## This configuration works for the machine at MPI Software Technologies
+ ## Uses MSTI MPI/Pro for message passing.
+@@ -815,7 +829,7 @@
+ cspi-ppc-mpi:
+ $(MAKE) all \
+ "ARCH = cspi-ppc-mpi" \
+-@@ -1448,7 +1424,7 @@ cspi-ppc-mpi:
++@@ -1448,7 +1424,7 @@
+ ## Mercury PowerPC Based Multicomputers Running MCOS
+ ## This configuration works for the machine at MPI Software Technologies
+ ## Uses MSTI MPI/Pro for message passing.
+@@ -824,7 +838,7 @@
+ mercury-ppc-mpi:
+ $(MAKE) all \
+ "ARCH = mercury-ppc-mpi" \
+-@@ -1469,7 +1445,7 @@ mercury-ppc-mpi-rtvi:
++@@ -1469,7 +1445,7 @@
+ "ARFLAGS = -r" \
+ "STRIP = /bin/touch" \
+ "LIBS = -L. -L/opt/MPIPro/lib ../compile/mercury-ppc-mpi-rtvi/libmgf.a ../compile/mercury-ppc-mpi-rtvi/libray.a $(RTVILIB) -lmpi.appc"
+@@ -833,7 +847,7 @@
+ @echo " Also, copy your machines file into your CWD."
+
+ ##
+-@@ -1490,7 +1466,7 @@ mercury-i860-rtvi:
++@@ -1490,7 +1466,7 @@
+ ## Mercury i860 Based Multicomputers Running MCOS
+ ## This configuration works for the machine at MPI Software Technologies
+ ## Uses MSTI MPI/Pro for message passing.
Index: math/sage/files/patch-build_pkgs_zlib_spkg-install
===================================================================
--- math/sage/files/patch-build_pkgs_zlib_spkg-install
+++ math/sage/files/patch-build_pkgs_zlib_spkg-install
@@ -1,12 +0,0 @@
---- build/pkgs/zlib/spkg-install-orig 2014-12-06 21:41:30.000000000 +0000
-+++ build/pkgs/zlib/spkg-install 2014-12-06 21:42:12.000000000 +0000
-@@ -1,5 +1,9 @@
- #!/usr/bin/env bash
-
-+# Use system zlibc because on FreeBSD the following doesn't build relocatable
-+# libraries.
-+exit 0
-+
- if [ -z "$SAGE_LOCAL" ]; then
- echo >&2 "Error: SAGE_LOCAL undefined - exiting..."
- echo >&2 "Maybe run 'sage -sh'?"
Index: math/sage/files/patch-configure.ac
===================================================================
--- math/sage/files/patch-configure.ac
+++ math/sage/files/patch-configure.ac
@@ -0,0 +1,22 @@
+--- configure.ac.orig 2020-04-12 17:52:58 UTC
++++ configure.ac
+@@ -172,18 +172,9 @@ please join the sage-devel discussion list - see
+ http://groups.google.com/group/sage-devel
+ The Sage community would also appreciate any patches you submit]]);;
+
+-*-*-freebsd*)
+-AC_MSG_ERROR([[
+-You are attempting to build Sage on the FreeBSD operating system,
+-which is not a supported platform for Sage yet, though
+-developers are working on adding FreeBSD support. Things may or
+-may not work. If you would like to help port Sage to FreeBSD,
+-please join the sage-devel discussion list - see
+-http://groups.google.com/group/sage-devel
+-The Sage community would also appreciate any patches you submit]]);;
+-
+ # The following are all supported platforms.
+ *-*-linux*);;
++*-*-freebsd*);;
+ *-*-darwin*);;
+ *-*-solaris*);;
+ *-*-cygwin*);;
Index: math/sage/files/patch-src_bin_sage-spkg
===================================================================
--- math/sage/files/patch-src_bin_sage-spkg
+++ math/sage/files/patch-src_bin_sage-spkg
@@ -1,32 +0,0 @@
---- src/bin/sage-spkg-orig 2014-01-29 17:26:07.000000000 +0000
-+++ src/bin/sage-spkg 2014-01-29 17:41:25.000000000 +0000
-@@ -593,6 +593,29 @@
- exit 1
- fi
-
-+if ls fbsd-patch-* > /dev/null 2>&1; then
-+ echo "===> Applying FreeBSD patches"
-+ cat fbsd-patch-* | patch -p0 || exit 1
-+ echo "===> Done applying FreeBSD patches"
-+fi
-+
-+# Inspired by run-autotools-fixup target in Mk/bsd.port.mk.
-+# Work around an issue where FreeBSD 10.0 is detected as FreeBSD 1.x.
-+for f in `find src -type f \( -name config.libpath -o \
-+ -name config.rpath -o -name configure -o -name libtool.m4 -o \
-+ -name ltconfig -o -name libtool -o -name aclocal.m4 -o \
-+ -name acinclude.m4 \)` ; do \
-+ sed -i.fbsd10bak \
-+ -e 's|freebsd1\*)|freebsd1.\*)|g' \
-+ -e 's|freebsd\[12\]\*)|freebsd[12].*)|g' \
-+ -e 's|freebsd\[123\]\*)|freebsd[123].*)|g' \
-+ -e 's|freebsd\[\[12\]\]\*)|freebsd[[12]].*)|g' \
-+ -e 's|freebsd\[\[123\]\]\*)|freebsd[[123]].*)|g' \
-+ ${f}
-+ rm -f ${f}.fbsd10bak
-+ echo "===> FreeBSD 10 autotools fix applied to ${f}"; \
-+done
-+
- # When there is no spkg-install, assume the "spkg" is a tarball not
- # specifically made for Sage. Since we want it to be as easy as
- # possible to install such a package, we "guess" spkg-install.
Index: math/sage/files/patch-src_doc_common_builder.py
===================================================================
--- math/sage/files/patch-src_doc_common_builder.py
+++ math/sage/files/patch-src_doc_common_builder.py
@@ -1,68 +0,0 @@
---- src/doc/common/builder.py.orig 2014-05-06 11:21:42.000000000 +0000
-+++ src/doc/common/builder.py 2014-05-15 21:18:06.000000000 +0000
-@@ -281,19 +281,22 @@
-
- # build the other documents in parallel
- from multiprocessing import Pool
-- pool = Pool(NUM_THREADS, maxtasksperchild=1)
-+ # pool = Pool(NUM_THREADS, maxtasksperchild=1)
- L = [(doc, name, kwds) + args for doc in others]
-- # map_async handles KeyboardInterrupt correctly. Plain map and
-- # apply_async does not, so don't use it.
-- x = pool.map_async(build_other_doc, L, 1)
-- try:
-- x.get(99999)
-- pool.close()
-- pool.join()
-- except Exception:
-- pool.terminate()
-- if ABORT_ON_ERROR:
-- raise
-+ # Pool doesn't work properly in FreeBSD. Instead:
-+ for iii in L:
-+ build_other_doc(iii)
-+ # # map_async handles KeyboardInterrupt correctly. Plain map and
-+ # # apply_async does not, so don't use it.
-+ # x = pool.map_async(build_other_doc, L, 1)
-+ # try:
-+ # x.get(99999)
-+ # pool.close()
-+ # pool.join()
-+ # except Exception:
-+ # pool.terminate()
-+ # if ABORT_ON_ERROR:
-+ # raise
- logger.warning("Elapsed time: %.1f seconds."%(time.time()-start))
- logger.warning("Done building the documentation!")
-
-@@ -479,18 +482,20 @@
- continue
- output_dir = self._output_dir(format, lang)
- from multiprocessing import Pool
-- pool = Pool(NUM_THREADS, maxtasksperchild=1)
-+ # pool = Pool(NUM_THREADS, maxtasksperchild=1)
- L = [(doc, lang, format, kwds) + args for doc in self.get_all_documents(refdir)]
- # (See comment in AllBuilder._wrapper about using map instead of apply.)
-- x = pool.map_async(build_ref_doc, L, 1)
-- try:
-- x.get(99999)
-- pool.close()
-- pool.join()
-- except Exception:
-- pool.terminate()
-- if ABORT_ON_ERROR:
-- raise
-+ for iii in L:
-+ build_ref_doc(iii)
-+ # x = pool.map_async(build_ref_doc, L, 1)
-+ # try:
-+ # x.get(99999)
-+ # pool.close()
-+ # pool.join()
-+ # except Exception:
-+ # pool.terminate()
-+ # if ABORT_ON_ERROR:
-+ # raise
- # The html refman must be build at the end to ensure correct
- # merging of indexes and inventories.
- # Sphinx is run here in the current process (not in a
Index: math/sage/files/patch-src_doc_common_custom-sphinx-build.py
===================================================================
--- math/sage/files/patch-src_doc_common_custom-sphinx-build.py
+++ math/sage/files/patch-src_doc_common_custom-sphinx-build.py
@@ -1,9 +0,0 @@
---- src/doc/common/custom-sphinx-build.py-orig 2014-05-15 19:16:13.000000000 +0000
-+++ src/doc/common/custom-sphinx-build.py 2014-05-15 19:17:11.000000000 +0000
-@@ -207,4 +207,5 @@
- if ERROR_MESSAGE and ABORT_ON_ERROR:
- sys.stdout.flush()
- sys.stderr.flush()
-- raise OSError(ERROR_MESSAGE)
-+ # Comment out next line so that warnings don't stop doc build.
-+ # raise OSError(ERROR_MESSAGE)
Index: math/sage/files/patch-src_sage_libs_ecl.pyx
===================================================================
--- math/sage/files/patch-src_sage_libs_ecl.pyx
+++ math/sage/files/patch-src_sage_libs_ecl.pyx
@@ -0,0 +1,74 @@
+--- src/sage/libs/ecl.pyx.orig 2020-05-22 13:21:27 UTC
++++ src/sage/libs/ecl.pyx
+@@ -15,7 +15,7 @@ Library interface to Embeddable Common Lisp (ECL)
+ #adapted to work with pure Python types.
+
+ from libc.stdlib cimport abort
+-from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD
++from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD, SIGFPE
+ from libc.signal cimport raise_ as signal_raise
+ from posix.signal cimport sigaction, sigaction_t
+ cimport cysignals.signals
+@@ -47,9 +47,14 @@ cdef extern from "eclsig.h":
+ void ecl_sig_off()
+ cdef sigaction_t ecl_sigint_handler
+ cdef sigaction_t ecl_sigbus_handler
++ cdef sigaction_t ecl_sigfpe_handler
+ cdef sigaction_t ecl_sigsegv_handler
+ cdef mpz_t ecl_mpz_from_bignum(cl_object obj)
+ cdef cl_object ecl_bignum_from_mpz(mpz_t num)
++ cdef int fegetexcept()
++ cdef int feenableexcept(int)
++ cdef int fedisableexcept(int)
++ cdef int ecl_feflags
+
+ cdef cl_object string_to_object(char * s):
+ return ecl_read_from_cstring(s)
+@@ -238,6 +243,7 @@ def init_ecl():
+ global ecl_has_booted
+ cdef char *argv[1]
+ cdef sigaction_t sage_action[32]
++ cdef int sage_fpes
+ cdef int i
+
+ if ecl_has_booted:
+@@ -257,6 +263,8 @@ def init_ecl():
+ for i in range(1,32):
+ sigaction(i, NULL, &sage_action[i])
+
++ sage_fpes = fegetexcept()
++
+ #initialize ECL
+ ecl_set_option(ECL_OPT_SIGNAL_HANDLING_THREAD, 0)
+ cl_boot(1, argv)
+@@ -264,8 +272,12 @@ def init_ecl():
+ #save signal handler from ECL
+ sigaction(SIGINT, NULL, &ecl_sigint_handler)
+ sigaction(SIGBUS, NULL, &ecl_sigbus_handler)
++ sigaction(SIGFPE, NULL, &ecl_sigfpe_handler)
+ sigaction(SIGSEGV, NULL, &ecl_sigsegv_handler)
+
++ #save ECL's floating point exception flags
++ ecl_feflags = fegetexcept()
++
+ #verify that no SIGCHLD handler was installed
+ cdef sigaction_t sig_test
+ sigaction(SIGCHLD, NULL, &sig_test)
+@@ -276,6 +288,9 @@ def init_ecl():
+ for i in range(1,32):
+ sigaction(i, &sage_action[i], NULL)
+
++ fedisableexcept(ecl_feflags)
++ feenableexcept(sage_fpes)
++
+ #initialise list of objects and bind to global variable
+ # *SAGE-LIST-OF-OBJECTS* to make it rooted in the reachable tree for the GC
+ list_of_objects=cl_cons(Cnil,cl_cons(Cnil,Cnil))
+@@ -319,7 +334,6 @@ def init_ecl():
+ (values nil (princ-to-string cnd)))))
+ """))
+ safe_funcall_clobj=cl_eval(string_to_object(b"(symbol-function 'sage-safe-funcall)"))
+-
+ ecl_has_booted = 1
+
+ cdef cl_object ecl_safe_eval(cl_object form) except NULL:
Index: math/sage/files/patch-src_sage_libs_eclsig.h
===================================================================
--- math/sage/files/patch-src_sage_libs_eclsig.h
+++ math/sage/files/patch-src_sage_libs_eclsig.h
@@ -0,0 +1,69 @@
+--- src/sage/libs/eclsig.h.orig 2020-05-22 13:21:27 UTC
++++ src/sage/libs/eclsig.h
+@@ -9,24 +9,66 @@
+
+
+ #include <signal.h>
++
++/* Rummage around to determine how ECL was configured */
++#define ECL_AVOID_FPE_H /* Prevent some local includes */
++#include <ecl/config-internal.h>
++
++#ifdef HAVE_FENV_H
++#include <fenv.h>
++#ifndef FE_ALL_EXCEPT
++#define FE_ALL_EXCEPT FE_DIVBYZERO | FE_OVERFLOW | FE_UNDERFLOW | FE_INVALID
++#endif
++#else
++#ifndef FE_ALL_EXCEPT
++#define FE_ALL_EXCEPT 0
++#endif
++#define feclearexcept(flags) do {} while (0)
++#endif
++
++#ifndef HAVE_FEENABLEEXCEPT
++/* These are GNU extensions */
++#define fegetexcept() 0
++#define feenablexcept(flags) do {} while (0)
++#define fdisableexcept(flags) do {} while (0)
++#endif
++
+ static struct sigaction ecl_sigint_handler;
+ static struct sigaction ecl_sigbus_handler;
++static struct sigaction ecl_sigfpe_handler;
+ static struct sigaction ecl_sigsegv_handler;
+ static struct sigaction sage_sigint_handler;
+ static struct sigaction sage_sigbus_handler;
++static struct sigaction sage_sigfpe_handler;
+ static struct sigaction sage_sigsegv_handler;
++static int ecl_feflags;
++static int sage_feflags;
+
+ static inline void set_ecl_signal_handler(void)
+ {
+ sigaction(SIGINT, &ecl_sigint_handler, &sage_sigint_handler);
+ sigaction(SIGBUS, &ecl_sigbus_handler, &sage_sigbus_handler);
++ sigaction(SIGFPE, &ecl_sigfpe_handler, &sage_sigfpe_handler);
+ sigaction(SIGSEGV, &ecl_sigsegv_handler, &sage_sigsegv_handler);
++
++ /* first clear pending floating point exceptions, if any */
++ feclearexcept(FE_ALL_EXCEPT);
++
++ /* sage_feflags should be 0; we don't set them otherwise */
++ sage_feflags = fedisableexcept(FE_ALL_EXCEPT);
++ feenableexcept(ecl_feflags);
+ }
+
+ static inline void unset_ecl_signal_handler(void)
+ {
++ /* clear pending exceptions and restore previous exception mask */
++ feclearexcept(FE_ALL_EXCEPT);
++ ecl_feflags = fedisableexcept(FE_ALL_EXCEPT);
++ feenableexcept(sage_feflags);
++
+ sigaction(SIGINT, &sage_sigint_handler, NULL);
+ sigaction(SIGBUS, &sage_sigbus_handler, NULL);
++ sigaction(SIGFPE, &sage_sigfpe_handler, NULL);
+ sigaction(SIGSEGV, &sage_sigsegv_handler, NULL);
+ }
+
Index: math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch
===================================================================
--- math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch
+++ math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch
@@ -0,0 +1,86 @@
+--- a/psutil/arch/bsd/freebsd_socks.c.orig 2017-03-21 00:28:50.234080000 -0700
++++ b/psutil/arch/bsd/freebsd_socks.c 2017-03-21 00:35:53.545508000 -0700
+@@ -112,10 +112,17 @@
+ }
+
+
++#if __FreeBSD_version >= 1200026
++static struct xtcpcb *
++psutil_search_tcplist(char *buf, struct kinfo_file *kif) {
++ struct xtcpcb *tp;
++ struct xinpcb *inp;
++#else
+ static struct tcpcb *
+ psutil_search_tcplist(char *buf, struct kinfo_file *kif) {
+ struct tcpcb *tp;
+ struct inpcb *inp;
++#endif
+ struct xinpgen *xig, *oxig;
+ struct xsocket *so;
+
+@@ -123,9 +130,15 @@
+ for (xig = (struct xinpgen *)((char *)xig + xig->xig_len);
+ xig->xig_len > sizeof(struct xinpgen);
+ xig = (struct xinpgen *)((char *)xig + xig->xig_len)) {
++#if __FreeBSD_version >= 1200026
++ tp = (struct xtcpcb *)xig;
++ inp = &tp->xt_inp;
++ so = &inp->xi_socket;
++#else
+ tp = &((struct xtcpcb *)xig)->xt_tp;
+ inp = &((struct xtcpcb *)xig)->xt_inp;
+ so = &((struct xtcpcb *)xig)->xt_socket;
++#endif
+
+ if (so->so_type != kif->kf_sock_type ||
+ so->xso_family != kif->kf_sock_domain ||
+@@ -208,7 +221,11 @@
+ struct xinpgen *xig, *exig;
+ struct xinpcb *xip;
+ struct xtcpcb *xtp;
++#if __FreeBSD_version >= 1200026
++ struct xinpcb *inp;
++#else
+ struct inpcb *inp;
++#endif
+ struct xsocket *so;
+ const char *varname = NULL;
+ size_t len, bufsize;
+@@ -273,8 +290,13 @@
+ goto error;
+ }
+ inp = &xtp->xt_inp;
++#if __FreeBSD_version >= 1200026
++ so = &inp->xi_socket;
++ status = xtp->t_state;
++#else
+ so = &xtp->xt_socket;
+ status = xtp->xt_tp.t_state;
++#endif
+ break;
+ case IPPROTO_UDP:
+ xip = (struct xinpcb *)xig;
+@@ -283,7 +305,11 @@
+ "struct xinpcb size mismatch");
+ goto error;
+ }
++#if __FreeBSD_version >= 1200026
++ inp = xip;
++#else
+ inp = &xip->xi_inp;
++#endif
+ so = &xip->xi_socket;
+ status = PSUTIL_CONN_NONE;
+ break;
+@@ -477,7 +503,11 @@
+ struct kinfo_file *freep = NULL;
+ struct kinfo_file *kif;
+ char *tcplist = NULL;
++#if __FreeBSD_version >= 1200026
++ struct xtcpcb *tcp;
++#else
+ struct tcpcb *tcp;
++#endif
+
+ PyObject *py_retlist = PyList_New(0);
+ PyObject *py_tuple = NULL;
Index: math/sage/files/py_libs_spkg-configure.m4
===================================================================
--- math/sage/files/py_libs_spkg-configure.m4
+++ math/sage/files/py_libs_spkg-configure.m4
@@ -0,0 +1,11 @@
+SAGE_SPKG_CONFIGURE(
+ [py_libs], [dnl direct testing for import module
+ AC_MSG_CHECKING(Import module py_libs...)
+ python3 -c "import py_libs;" > /dev/null 2>&1
+ if test $? -ne 0; then
+ AC_MSG_RESULT(KO)
+ sage_spkg_install_py_libs=yes
+ else
+ AC_MSG_RESULT(OK)
+ fi
+])
Index: math/sage/files/pynac_spkg-configure.m4
===================================================================
--- math/sage/files/pynac_spkg-configure.m4
+++ math/sage/files/pynac_spkg-configure.m4
@@ -0,0 +1,6 @@
+SAGE_SPKG_CONFIGURE([pynac], [
+ SAGE_SPKG_DEPCHECK([gmp ntl flint singular giac], [
+ dnl checking with pkg-config
+ PKG_CHECK_MODULES([libpynac], [pynac = 0.7.26], [], [sage_spkg_install_pynac=yes])
+ ])
+])
Index: math/sage/files/rubiks_spkg-configure.m4
===================================================================
--- math/sage/files/rubiks_spkg-configure.m4
+++ math/sage/files/rubiks_spkg-configure.m4
@@ -0,0 +1,11 @@
+SAGE_SPKG_CONFIGURE([rubiks], [
+ AC_PATH_PROG([rubiks], [cu2])
+ AC_PATH_PROG([rubiks], [cubex])
+ AC_PATH_PROG([rubiks], [dikcube])
+ AC_PATH_PROG([rubiks], [mcube])
+ AC_PATH_PROG([rubiks], [optimal])
+ AC_PATH_PROG([rubiks], [size222])
+ AS_IF([test x$rubiks = x], [
+ AC_MSG_NOTICE([rubiks not found. Installing rubiks])
+ sage_spkg_install_rubiks=yes])
+])
Index: math/sage/files/sage_brial_spkg-configure.m4.in
===================================================================
--- math/sage/files/sage_brial_spkg-configure.m4.in
+++ math/sage/files/sage_brial_spkg-configure.m4.in
@@ -0,0 +1,10 @@
+SAGE_SPKG_CONFIGURE(
+ [sage_brial], [dnl direct testing of file existence, import do not work without sage
+ AC_MSG_CHECKING(py-brial installation...)
+ if [[ -f %%PYTHON_SITELIBDIR%%/brial/cnf.py ]] ; then
+ AC_MSG_RESULT(OK)
+ else
+ AC_MSG_RESULT(KO)
+ sage_spkg_install_sage_brial=yes
+ fi
+])
Index: math/sage/files/singular_spkg-configure.m4
===================================================================
--- math/sage/files/singular_spkg-configure.m4
+++ math/sage/files/singular_spkg-configure.m4
@@ -0,0 +1,6 @@
+SAGE_SPKG_CONFIGURE([singular], [
+ SAGE_SPKG_DEPCHECK([gmp mpfr], [
+ dnl checking with pkg-config
+ PKG_CHECK_MODULES([libSingular], [Singular >= 4.1.1], [], [sage_spkg_install_singular=yes])
+ ])
+])
Index: math/sage/files/suitesparse_spkg-configure.m4
===================================================================
--- math/sage/files/suitesparse_spkg-configure.m4
+++ math/sage/files/suitesparse_spkg-configure.m4
@@ -0,0 +1,16 @@
+SAGE_SPKG_CONFIGURE([suitesparse], [
+ SAGE_SPKG_DEPCHECK([openblas], [
+ AC_CHECK_HEADER([suitesparse/SuiteSparse_config.h], [
+ AC_SEARCH_LIBS([cholmod_speye], [cholmod],[],
+ [sage_spkg_install_suitesparse=yes])
+ ], [
+ sage_spkg_install_suitesparse=yes
+ ])
+ ])
+], [], [], [
+ AS_IF([test x$sage_spkg_install_suitesparse = xyes], [
+ AC_SUBST(SAGE_SUITESPARSE_PREFIX, ['$SAGE_LOCAL'])
+ ], [
+ AC_SUBST(SAGE_SUITESPARSE_PREFIX, [''])
+ ])
+])
Index: math/sage/files/sympow_spkg-configure.m4
===================================================================
--- math/sage/files/sympow_spkg-configure.m4
+++ math/sage/files/sympow_spkg-configure.m4
@@ -0,0 +1,4 @@
+SAGE_SPKG_CONFIGURE([sympow], [
+ AC_PATH_PROG([SYMPOW], [sympow])
+ AS_IF([test -z "$ac_cv_path_SYMPOW"], [sage_spkg_install_sympow=yes])
+])
Index: math/sage/files/threejs_spkg-configure.m4.in
===================================================================
--- math/sage/files/threejs_spkg-configure.m4.in
+++ math/sage/files/threejs_spkg-configure.m4.in
@@ -0,0 +1,10 @@
+SAGE_SPKG_CONFIGURE(
+ [threejs], [dnl direct testing of file existence
+ AC_MSG_CHECKING(ThreeJS installation...)
+ if [[ -f %%LOCALBASE%%/www/threejs/Three.js ]] ; then
+ AC_MSG_RESULT(OK)
+ else
+ AC_MSG_RESULT(KO)
+ sage_spkg_install_threejs=yes
+ fi
+])
Index: math/sage/files/zn_poly_spkg-configure.m4
===================================================================
--- math/sage/files/zn_poly_spkg-configure.m4
+++ math/sage/files/zn_poly_spkg-configure.m4
@@ -0,0 +1,8 @@
+SAGE_SPKG_CONFIGURE([zn_poly], [
+ SAGE_SPKG_DEPCHECK([gmp], [
+ AC_CHECK_HEADER([zn_poly/zn_poly.h], [
+ AC_SEARCH_LIBS([zn_mod_init], [zn_poly-0.9], [
+ ], [sage_spkg_install_zn_poly=yes])
+ ], [sage_spkg_install_zn_poly=yes])
+ ])
+])
Index: math/sage/pkg-plist
===================================================================
--- math/sage/pkg-plist
+++ math/sage/pkg-plist
@@ -0,0 +1,8608 @@
+bin/jupyter-bundlerextension
+bin/jupyter-nbextension
+bin/jupyter-notebook
+bin/jupyter-serverextension
+bin/math-readline
+bin/python
+bin/python3
+bin/sage
+bin/sage-cachegrind
+bin/sage-callgrind
+bin/sage-cleaner
+bin/sage-clone-source
+bin/sage-config
+bin/sage-coverage
+bin/sage-coverageall
+bin/sage-cython
+bin/sage-download-upstream
+bin/sage-env
+bin/sage-env-config
+bin/sage-eval
+bin/sage-fix-pkg-checksums
+bin/sage-fixdoctests
+bin/sage-gdb-commands
+bin/sage-grep
+bin/sage-grepdoc
+bin/sage-inline-fortran
+bin/sage-ipynb2rst
+bin/sage-ipython
+bin/sage-list-experimental
+bin/sage-list-optional
+bin/sage-list-packages
+bin/sage-list-standard
+bin/sage-location
+bin/sage-massif
+bin/sage-maxima.lisp
+bin/sage-native-execute
+bin/sage-notebook
+bin/sage-num-threads.py
+bin/sage-omega
+bin/sage-open
+bin/sage-preparse
+bin/sage-pypkg-location
+bin/sage-python
+bin/sage-rebase.bat
+bin/sage-rebase.sh
+bin/sage-rebaseall.bat
+bin/sage-rebaseall.sh
+bin/sage-rst2sws
+bin/sage-rst2txt
+bin/sage-rsyncdist
+bin/sage-run
+bin/sage-run-cython
+bin/sage-runtests
+bin/sage-sdist
+bin/sage-startuptime.py
+bin/sage-sws2rst
+bin/sage-update-src
+bin/sage-update-version
+bin/sage-upgrade
+bin/sage-valgrind
+bin/sage-version.sh
+bin/sagenb-export
+default.qepcadrc
+etc/jupyter/jupyter_notebook_config.py
+etc/jupyter/nbconfig/notebook.d/widgetsnbextension.json
+etc/sage-started.txt
+include/ratpoints.h
+lib/libratpoints.a
+%%PYTHON_SITELIBDIR%%/__pycache__/backports_abc.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/ipykernel_launcher.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/path.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/sage_conf.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/sagetex.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/singledispatch.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/singledispatch_helpers.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/__pycache__/test_path.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/PKG-INFO
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/SOURCES.txt
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/dependency_links.txt
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/installed-files.txt
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/namespace_packages.txt
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/requires.txt
+%%PYTHON_SITELIBDIR%%/backports.functools_lru_cache-1.5-py%%PYTHON_VER%%.egg-info/top_level.txt
+%%PYTHON_SITELIBDIR%%/backports.shutil_get_terminal_size-1.0.0-py%%PYTHON_VER%%.egg-info/PKG-INFO
+%%PYTHON_SITELIBDIR%%/backports.shutil_get_terminal_size-1.0.0-py%%PYTHON_VER%%.egg-info/SOURCES.txt
+%%PYTHON_SITELIBDIR%%/backports.shutil_get_terminal_size-1.0.0-py%%PYTHON_VER%%.egg-info/dependency_links.txt
+%%PYTHON_SITELIBDIR%%/backports.shutil_get_terminal_size-1.0.0-py%%PYTHON_VER%%.egg-info/installed-files.txt
+%%PYTHON_SITELIBDIR%%/backports.shutil_get_terminal_size-1.0.0-py%%PYTHON_VER%%.egg-info/top_level.txt
+%%PYTHON_SITELIBDIR%%/backports.ssl_match_hostname-3.5.0.1-py%%PYTHON_VER%%.egg-info/PKG-INFO
+%%PYTHON_SITELIBDIR%%/backports.ssl_match_hostname-3.5.0.1-py%%PYTHON_VER%%.egg-info/SOURCES.txt
+%%PYTHON_SITELIBDIR%%/backports.ssl_match_hostname-3.5.0.1-py%%PYTHON_VER%%.egg-info/dependency_links.txt
+%%PYTHON_SITELIBDIR%%/backports.ssl_match_hostname-3.5.0.1-py%%PYTHON_VER%%.egg-info/installed-files.txt
+%%PYTHON_SITELIBDIR%%/backports.ssl_match_hostname-3.5.0.1-py%%PYTHON_VER%%.egg-info/top_level.txt
+%%PYTHON_SITELIBDIR%%/backports/__pycache__/functools_lru_cache.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/backports/functools_lru_cache.py
+%%PYTHON_SITELIBDIR%%/backports/shutil_get_terminal_size/__init__.py
+%%PYTHON_SITELIBDIR%%/backports/shutil_get_terminal_size/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/backports/shutil_get_terminal_size/__pycache__/get_terminal_size.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/backports/shutil_get_terminal_size/get_terminal_size.py
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