Page MenuHomeFreeBSD

D13322.id36117.diff
No OneTemporary

D13322.id36117.diff

Index: biology/py-macs2/Makefile
===================================================================
--- /dev/null
+++ biology/py-macs2/Makefile
@@ -0,0 +1,31 @@
+# $FreeBSD$
+
+PORTNAME= macs2
+PORTVERSION= 2.1.0.p20170505
+CATEGORIES= biology python
+PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER= jwb@FreeBSD.org
+COMMENT= Analysis of chromatin immunoprecipitation (ChIP) sequences
+
+LICENSE= BSD3CLAUSE
+LICENSE_FILE= ${WRKSRC}/COPYING
+
+BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR}
+
+USES= python
+USE_PYTHON= autoplist concurrent cython distutils
+
+USE_GITHUB= yes
+GH_ACCOUNT= taoliu
+GH_PROJECT= MACS
+GH_TAGNAME= 6946b2f
+
+PYSETUP= setup_w_cython.py
+
+post-stage:
+ ${STRIP_CMD} \
+ ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \
+ ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so
+
+.include <bsd.port.mk>
Index: biology/py-macs2/distinfo
===================================================================
--- /dev/null
+++ biology/py-macs2/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1512241922
+SHA256 (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = c6e4fb8b69b955134399fcdfc075cea5fbc29fabbc46cc4e9acdedeb1174fcfd
+SIZE (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = 159560613
Index: biology/py-macs2/pkg-descr
===================================================================
--- /dev/null
+++ biology/py-macs2/pkg-descr
@@ -0,0 +1,6 @@
+MACS is a tool for chromatin immunoprecipitation (ChIP) sequence analysis.
+MACS empirically models the length of the sequenced ChIP fragments, which
+tend to be shorter than sonication or library construction size estimates,
+and uses it to improve the spatial resolution of predicted binding sites.
+
+WWW: https://github.com/taoliu/MACS

File Metadata

Mime Type
text/plain
Expires
Thu, Feb 19, 11:34 AM (20 h, 41 m)
Storage Engine
blob
Storage Format
Raw Data
Storage Handle
28877083
Default Alt Text
D13322.id36117.diff (1 KB)

Event Timeline