Page MenuHomeFreeBSD
Files F140028218

D54305.id.diff
No OneTemporary
Actions

D54305.id.diff
View Options

diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile
--- a/biology/py-biom-format/Makefile
+++ b/biology/py-biom-format/Makefile
@@ -1,8 +1,6 @@
PORTNAME= biom-format
-PORTVERSION= 2.1.16
-PORTREVISION= 1
+DISTVERSION= 2.1.17
CATEGORIES= biology python
-MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jrm@FreeBSD.org
@@ -11,22 +9,26 @@
LICENSE= BSD3CLAUSE
-BUILD_DEPENDS= ${PYNUMPY}
-RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
- ${PYNUMPY} \
- ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR} \
+BUILD_DEPENDS= ${PYNUMPY} \
+ ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR}
+RUN_DEPENDS= ${PYNUMPY} \
+ ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pandas>=0.20.0:math/py-pandas@${PY_FLAVOR} \
- ${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR}
+ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR}
+TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flake8>=4.0.1:devel/py-flake8@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}pytest-cov>=0:devel/py-pytest-cov@${PY_FLAVOR}
USES= python
-USE_PYTHON= autoplist concurrent cython distutils pytest
-
-.include <bsd.port.pre.mk>
-
-post-extract:
- ${RM} -r ${WRKSRC}/tests
+USE_GITHUB= yes
+GH_ACCOUNT= biocore
+USE_PYTHON= autoplist concurrent cython3 pep517 pytest
post-install:
- ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/biom/*.so
+ @${FIND} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -name '*.so' -exec ${STRIP_CMD} {} +
+
+do-test:
+ cd ${WRKSRC} && ${PYTHON_CMD} setup.py build_ext --inplace && ${PYTHON_CMD} -m pytest biom
-.include <bsd.port.post.mk>
+.include <bsd.port.mk>
diff --git a/biology/py-biom-format/distinfo b/biology/py-biom-format/distinfo
--- a/biology/py-biom-format/distinfo
+++ b/biology/py-biom-format/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1718787972
-SHA256 (biom-format-2.1.16.tar.gz) = 47f88d57a94ecaa4d06f3578ca394e78db6d12e46ab0886634743181e67dcfc9
-SIZE (biom-format-2.1.16.tar.gz) = 11720476
+TIMESTAMP = 1766032026
+SHA256 (biocore-biom-format-2.1.17_GH0.tar.gz) = 70dc179472330e6cfb1b1e3483bcf3e17a9dedd91e7ee7c38b2906f1852cb042
+SIZE (biocore-biom-format-2.1.17_GH0.tar.gz) = 11893179

File Metadata

Mime Type
text/plain
Expires
Sat, Dec 20, 6:20 AM (4 h, 8 m)
Storage Engine
blob
Storage Format
Raw Data
Storage Handle
27092779
Default Alt Text
D54305.id.diff (2 KB)

Event Timeline