Index: head/archivers/py-xopen/Makefile =================================================================== --- head/archivers/py-xopen/Makefile (revision 567502) +++ head/archivers/py-xopen/Makefile (revision 567503) @@ -1,28 +1,28 @@ # $FreeBSD$ PORTNAME= xopen -DISTVERSION= 1.0.0 # py-cutadapt requires 1.0.x +DISTVERSION= 1.1.0 # py-cutadapt 3.3 requires 1.1.x CATEGORIES= archivers python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Open compressed files transparently LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>=0:devel/py-setuptools_scm@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR} \ pigz>=0:archivers/pigz TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} USES= python:3.6+ USE_PYTHON= autoplist distutils NO_ARCH= yes do-test: @cd ${WRKSRC} && ${PYTHON_CMD} -m pytest .include Index: head/archivers/py-xopen/distinfo =================================================================== --- head/archivers/py-xopen/distinfo (revision 567502) +++ head/archivers/py-xopen/distinfo (revision 567503) @@ -1,3 +1,3 @@ -TIMESTAMP = 1612290513 -SHA256 (xopen-1.0.0.tar.gz) = 2fd9f537d96c6fb2f0bfed2c5ea133d8961dcef0baa3d8c388cb8bea2af5b090 -SIZE (xopen-1.0.0.tar.gz) = 17487 +TIMESTAMP = 1615045123 +SHA256 (xopen-1.1.0.tar.gz) = 38277eb96313b2e8822e19e793791801a1f41bf13ee5b48616a97afc65e9adb3 +SIZE (xopen-1.1.0.tar.gz) = 17836 Index: head/biology/py-cutadapt/Makefile =================================================================== --- head/biology/py-cutadapt/Makefile (revision 567502) +++ head/biology/py-cutadapt/Makefile (revision 567503) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= cutadapt -DISTVERSION= 3.2 +DISTVERSION= 3.3 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Trim adapters from high-throughput sequencing reads LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen==1.0:archivers/py-xopen@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen==1.1:biology/py-xopen@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}dnaio==0.5:biology/py-dnaio@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} USES= python:3.6+ USE_PYTHON= autoplist concurrent cython distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so do-test: @cd ${WRKSRC} && ${PYTHON_CMD} -m pytest .include Index: head/biology/py-cutadapt/distinfo =================================================================== --- head/biology/py-cutadapt/distinfo (revision 567502) +++ head/biology/py-cutadapt/distinfo (revision 567503) @@ -1,3 +1,3 @@ -TIMESTAMP = 1612289840 -SHA256 (cutadapt-3.2.tar.gz) = 82c063129d0449d3c0bfb9b849db2bee6b226d3d1c31cad68011e2473791dc75 -SIZE (cutadapt-3.2.tar.gz) = 292702 +TIMESTAMP = 1615045047 +SHA256 (cutadapt-3.3.tar.gz) = cf502bd0df120d584524ea0e834b45135233c38089e900bd41c3d5cd41ee6eea +SIZE (cutadapt-3.3.tar.gz) = 294579