Index: head/biology/bowtie2/Makefile =================================================================== --- head/biology/bowtie2/Makefile (revision 563426) +++ head/biology/bowtie2/Makefile (revision 563427) @@ -1,56 +1,57 @@ # $FreeBSD$ PORTNAME= bowtie2 DISTVERSIONPREFIX= v DISTVERSION= 2.4.2 +PORTREVISION= 1 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org COMMENT= Ultrafast, memory-efficient short read aligner LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE # Requires a 64-bit processor and depends on hard-coded SSE instructions # Experimental support for AARCH64 as of 2.3.5 ONLY_FOR_ARCHS= aarch64 amd64 -LIB_DEPENDS= libtbb.so:devel/tbb +LIB_DEPENDS= libtbb.so:devel/onetbb RUN_DEPENDS= bash:shells/bash USES= gmake localbase:ldflags perl5 python shebangfix USE_PERL5= run USE_GITHUB= yes SHEBANG_FILES= bowtie2 bowtie2-build bowtie2-inspect \ scripts/bowtie2-hbb.sh scripts/*.pl GH_ACCOUNT= BenLangmead OPTIONS_DEFINE= DOCS EXAMPLES SUB_FILES= bowtie2-test pre-configure: @${REINPLACE_CMD} \ -e 's|^RELEASE_FLAGS|# RELEASE_FLAGS|' \ -e 's|tbbmalloc_proxy|tbbmalloc|' \ ${WRKSRC}/Makefile post-install: @${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${INSTALL_PROGRAM} \ ${WRKSRC}/bowtie2*-s \ ${WRKSRC}/bowtie2*-l \ ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} \ ${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.pl \ ${STAGEDIR}${DATADIR}/scripts ${INSTALL_SCRIPT} ${WRKDIR}/bowtie2-test ${STAGEDIR}${PREFIX}/bin post-install-DOCS-on: (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) post-install-EXAMPLES-on: (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) .include