Index: head/databases/grass7/Makefile =================================================================== --- head/databases/grass7/Makefile (revision 562678) +++ head/databases/grass7/Makefile (revision 562679) @@ -1,222 +1,223 @@ # Created by: Mikael URANKAR and Loïc BARTOLETTI # $FreeBSD$ PORTNAME= grass PORTVERSION= 7.8.5 +PORTREVISION= 1 CATEGORIES= databases geography MASTER_SITES= https://grass.osgeo.org/%SUBDIR%/ \ http://grass.cict.fr/%SUBDIR%/ \ http://grass.fbk.eu/%SUBDIR%/ \ http://grass.gis-lab.info/%SUBDIR%/ \ http://grass.meteo.uni.wroc.pl/%SUBDIR%/ \ http://grass.polytechnic.edu.na/%SUBDIR%/ \ http://grass.unibuc.ro/%SUBDIR%/ \ http://mirrors.ibiblio.org/grass/%SUBDIR%/ \ http://pinus.gntech.ac.kr/grass/%SUBDIR%/ \ http://wgbis.ces.iisc.ernet.in/grass/%SUBDIR%/ \ http://wgrass.media.osaka-cu.ac.jp/grassh/%SUBDIR%/ MASTER_SITE_SUBDIR= grass${VER}/source PKGNAMESUFFIX= 7 MAINTAINER= lbartoletti@FreeBSD.org COMMENT= Open source Geographical Information System (GIS) LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/GPL.TXT BROKEN_sparc64= Does not configure on sparc64 BUILD_DEPENDS= ${PY_NUMPY} \ ${PYTHON_SITELIBDIR}/six.py:devel/py-six@${PY_FLAVOR} LIB_DEPENDS= libgdal.so:graphics/gdal \ libpng.so:graphics/png \ libproj.so:graphics/proj \ libtiff.so:graphics/tiff \ libfftw3.so:math/fftw3 \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libgeos.so:graphics/geos RUN_DEPENDS= ${PY_NUMPY} \ ${PYTHON_SITELIBDIR}/six.py:devel/py-six@${PY_FLAVOR} USES= blaslapack compiler:c11 gl gmake gnome iconv \ jpeg perl5 pkgconfig python:3.6+ readline shebangfix xorg SHEBANG_GLOB= *.py SHEBANG_LANG= nviz nviz_OLD_CMD= nviz nviz_CMD= ${PREFIX}/${GRASS_INST_DIR}/bin/nviz USE_XORG= sm ice x11 xext xi xmu xrender xt USE_GL= gl glu USE_GNOME= cairo USE_WX= 3.0 WX_COMPS= wx:build python:run GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-includes=${LOCALBASE}/include \ --with-libs=${LOCALBASE}/lib \ --with-opengl-includes=${LOCALBASE}/include/ \ --with-opengl-libs=${LOCALBASE}/lib/ \ --with-freetype \ --with-freetype-includes=${LOCALBASE}/include/freetype2 \ --with-blas \ --with-lapack \ --with-cairo \ --with-readline \ --enable-largefile \ --with-wxwidgets=${WX_CONFIG} \ --with-proj-share=${LOCALBASE}/share/proj \ --with-proj-includes=${LOCALBASE}/include \ --with-proj-libs=${LOCALBASE}/lib \ --with-proj=${LOCALBASE}/bin/proj \ --with-geos=${LOCALBASE}/bin/geos-config \ --with-gdal=${LOCALBASE}/bin/gdal-config \ --with-pthread=yes \ --with-openmp \ --prefix=${LOCALBASE} \ --exec-prefix=${LOCALBASE} CFLAGS+= -std=c11 SUB_FILES= pkg-message SUB_LIST= PYTHON_CMD=${PYTHON_CMD} BINARY_ALIAS= python3=${PYTHON_CMD} ALL_TARGET= default USE_LDCONFIG= ${PREFIX}/${GRASS_INST_DIR}/lib MAKE_ENV+= TARGET="${CONFIGURE_TARGET}" VER= ${PORTVERSION:R:C/\.//} PLIST_SUB= GRASS_INST_DIR="${GRASS_INST_DIR}" \ VERSION="${PORTVERSION}" VERS="${PORTVERSION:C/([0-9]+).([0-9]+)(.*)/\1.\2/}" \ VER="${VER}" MAJVER="${PKGNAMESUFFIX}" OPTIONS_DEFINE= LAS NETCDF NLS PDAL ZSTD OPTIONS_MULTI= DB OPTIONS_MULTI_DB= MYSQL ODBC PGSQL SQLITE #OPTIONS_SINGLE= BLAS #OPTIONS_SINGLE_BLAS= ATLAS NETLIB GOTOBLAS OPENBLAS OPTIONS_DEFAULT= LAS NETCDF NLS PDAL PGSQL SQLITE ZSTD OPTIONS_SUB= yes # BLAS/LAPACK: Only netlib compile the maxmimum number of modules #BLAS_DESC= BLAS/LAPACK support #GOTOBLAS_DESC= GotoBLAS implementationS #ATLAS_USES= blaslapack:atlas #NETLIB_USES= blaslapack #GOTOBLAS_USES= blaslapack:gotoblas #OPENBLAS_USES= blaslapack:openblas LAS_DESC= Enable LiDAR modules PDAL_DESC= Enable points cloud data modules DB_DESC= Database support LAS_CONFIGURE_ON= --with-liblas=yes LAS_LIB_DEPENDS= liblas.so:devel/liblas \ libboost_program_options.so:devel/boost-libs \ libboost_thread.so:devel/boost-libs \ libgeotiff.so:graphics/libgeotiff MYSQL_USES= mysql MYSQL_CONFIGURE_ON= --with-mysql \ --with-mysql-includes=${LOCALBASE}/include/mysql \ --with-mysql-libs=${LOCALBASE}/lib/mysql NETCDF_CONFIGURE_ON= --with-netcdf=${LOCALBASE}/bin/nc-config NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NLS_CONFIGURE_WITH= nls NLS_USES= gettext ODBC_LIB_DEPENDS= libodbc.so:databases/unixODBC ODBC_CONFIGURE_WITH= odbc PDAL_CONFIGURE_ON= --with-pdal=${LOCALBASE}/bin/pdal-config PDAL_LIB_DEPENDS= libpdal_base.so:math/pdal PGSQL_USES= pgsql PGSQL_CONFIGURE_WITH= postgres SQLITE_USES= sqlite SQLITE_CONFIGURE_WITH= sqlite SQLITE_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR} ZSTD_CONFIGURE_WITH= zstd ZSTD_LIB_DEPENDS= libzstd.so:archivers/zstd .include .if ${ARCH} == "aarch64" || ${ARCH} == "riscv64" PLIST_SUB+= WOSBRK="@comment " .else PLIST_SUB+= WOSBRK="" .endif .if ${ARCH} == "i386" && ${OSVERSION} < 1200000 # clang 7.x and 8.x do not build properly on 11i386 CPP= clang-cpp${LLVM_DEFAULT} CC= clang${LLVM_DEFAULT} CXX= clang++${LLVM_DEFAULT} BUILD_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} .endif .if !defined (GRASS_INST_DIR) GRASS_INST_DIR= ${PORTNAME}${VER} .endif MANDIRS= ${PREFIX}/grass${VER}/docs/man/man1 post-patch: ${REINPLACE_CMD} -e \ 's|make -C|$$(MAKE) -C| ; \ /^BINDIR/s|=.*|= $${DESTDIR}$${UNIX_BIN}| ; \ /test /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /tar /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /chmod /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /tar /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /rm /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /$$(MAKE) /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /^$$(INST_DIR)\//s|$$(INST_DIR)|$${DESTDIR}$${INST_DIR}|g ; \ s|> $$(INST_DIR)|> $${DESTDIR}$${INST_DIR}|' \ ${WRKSRC}/include/Make/Install.make ${REINPLACE_CMD} \ 's|= python3|= ${PYTHON_CMD:T}|' ${WRKSRC}/include/Make/Platform.make.in ${REINPLACE_CMD} -e \ "s|'make'|'gmake'|g; \ s|gcc|${CC}|" ${WRKSRC}/scripts/g.extension/g.extension.py ${REINPLACE_CMD} \ 's|$$(ARCH)|$$(TARGET)|g' ${WRKSRC}/include/Make/Grass.make # Replace hardcoded python interpreter to PYTHON_CMD ${REINPLACE_CMD} "s|'GRASS_PYTHON', 'python'|'GRASS_PYTHON', \'${PYTHON_CMD}\'|g" \ ${WRKSRC}/scripts/wxpyimgview/wxpyimgview.py ${REINPLACE_CMD} 's|GRASS_PYTHON=python|GRASS_PYTHON=${PYTHON_CMD}|g' \ ${WRKSRC}/lib/init/grass.sh ${REINPLACE_CMD} \ "s|environ\['GRASS_PYTHON'\] = "'"python3"'"|environ['GRASS_PYTHON'] = "'"${PYTHON_CMD}"'"|g" \ ${WRKSRC}/lib/python/script/setup.py post-install: # remove useless files ${RM} -rf ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/db.test/ ${RM} -rf ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/demolocation/PERMANENT/.tmp/ ${RM} -rf ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/docs/html/colortables/*bak.png # fix pkg-plist issues # poudriere testport, poudriere bulk -t and make ports can create different pkg-plist for i in `${FIND} ${WRKSRC}/scripts -type f \( -name *jpg -o -name *png -o -name *gxm \) -print`; do \ ${INSTALL_DATA} $$i ${STAGEDIR}${LOCALBASE}/${PORTNAME}${VER}/docs/html; \ done for i in `${FIND} ${WRKSRC}/gui/wxpython -type f \( -name *jpg -o -name *png -o -name *gxm \) -print`; do \ ${INSTALL_DATA} $$i ${STAGEDIR}${LOCALBASE}/${PORTNAME}${VER}/docs/html; \ done for i in `${FIND} ${WRKSRC}/raster -type f \( -name *jpg -o -name *png -o -name *gxm \) -print`; do \ ${INSTALL_DATA} $$i ${STAGEDIR}${LOCALBASE}/${PORTNAME}${VER}/docs/html; \ done for i in `${FIND} ${WRKSRC}/imagery -type f \( -name *jpg -o -name *png -o -name *gxm \) -print`; do \ ${INSTALL_DATA} $$i ${STAGEDIR}${LOCALBASE}/${PORTNAME}${VER}/docs/html; \ done ${INSTALL_SCRIPT} ${WRKSRC}/scripts/wxpyimgview/wxpyimgview_gui.py ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/wxpyimgview_gui.py ${MKDIR} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/d.polar ${INSTALL_DATA} ${WRKSRC}/scripts/d.polar/ps_defs.eps ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/d.polar # STRIP PART ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/bin/* ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/driver/db/* .for i in clean_temp current_time_s_ms echo i.find lock run r.watershed/seg r.watershed/ram lister/vector lister/cell ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/${i} .endfor ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/tools/g.echo ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/lib/* # symlink grass7 ${LN} -sf ${PORTNAME}${VER} \ ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} .include Index: head/graphics/gmt/Makefile =================================================================== --- head/graphics/gmt/Makefile (revision 562678) +++ head/graphics/gmt/Makefile (revision 562679) @@ -1,46 +1,47 @@ # $FreeBSD$ PORTNAME= gmt DISTVERSION= 6.1.1 +PORTREVISION= 1 CATEGORIES= graphics MAINTAINER= lbartoletti@FreeBSD.org COMMENT= Generic Mapping Tools - data processing and display software package LICENSE= GPLv3 LGPL3 LICENSE_COMB= multi LIB_DEPENDS= libnetcdf.so:science/netcdf \ libcurl.so:ftp/curl \ libpcre.so:devel/pcre \ libfftw3f_threads.so:math/fftw3-float \ libgdal.so:graphics/gdal \ libgeos.so:graphics/geos RUN_DEPENDS= bash:shells/bash \ GraphicsMagick>0:graphics/GraphicsMagick \ ffmpeg>0:multimedia/ffmpeg \ xdg-open:devel/xdg-utils \ BUILD_DEPENDS= ${LOCALBASE}/share/dcw-gmt/dcw-gmt.nc:graphics/gmt-dcw \ ${LOCALBASE}/share/gshhg-gmt/binned_GSHHS_c.nc:graphics/gmt-gshhg USES= blaslapack cmake ghostscript:run shebangfix USE_GITHUB= yes USE_LDCONFIG= yes GH_ACCOUNT= GenericMappingTools #SHEBANG_GLOB= *.sh *.in #SHEBANG_FILES= share/tools/ncdeflate src/img/img2google src/gmtswitch CMAKE_ARGS+= -DCMAKE_BUILD_TYPE=RelWithDebInfo \ -DCMAKE_INSTALL_PREFIX=${PREFIX} \ -DDCW_ROOT=${LOCALBASE}/share/dcw-gmt \ -DCOPY_DCW=off \ -DGSHHG_ROOT=${LOCALBASE}/share/gshhg-gmt \ -DCOPY_GSHHG=off \ -DGMT_DATADIR=share/${PORTNAME} \ -DGMT_DOCDIR=share/doc/${PORTNAME} \ -DGMT_MANDIR=share/doc/${PORTNAME}/man .include Index: head/graphics/grads/Makefile =================================================================== --- head/graphics/grads/Makefile (revision 562678) +++ head/graphics/grads/Makefile (revision 562679) @@ -1,83 +1,83 @@ # Created by: Greg Lewis # $FreeBSD$ PORTNAME= grads PORTVERSION= 1.9b4 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= graphics science math MASTER_SITES= ftp://grads.iges.org/grads/1.9/:src \ ftp://cola.gmu.edu/grads/1.9/:src \ ftp://grads.iges.org/grads/:other \ ftp://cola.gmu.edu/grads/:other DISTFILES= ${PORTNAME}-src-${PORTVERSION}${EXTRACT_SUFX}:src \ example.tar.gz:other EXTRACT_ONLY= ${PORTNAME}-src-${PORTVERSION}${EXTRACT_SUFX} MAINTAINER= glewis@FreeBSD.org COMMENT= The Grid Analysis and Display System BUILD_DEPENDS= ${LOCALBASE}/lib/libudunits2.a:science/udunits \ ${LOCALBASE}/lib/libsx.a:x11/libsx LIB_DEPENDS= libgd.so:graphics/gd \ libpng.so:graphics/png USES= jpeg ncurses GNU_CONFIGURE= yes CONFIGURE_ENV+= SUPPLIBS="${LOCALBASE}" CONFIGURE_ARGS+= --enable-dyn-supplibs \ --with-readline \ --with-printim \ --with-gui \ --with-x OPTIONS_DEFINE= HDF NETCDF DOCS EXAMPLES OPTIONS_DEFAULT= NETCDF HDF_DESC= Build hdf-support (only hdf OR netcdf is supported) NETCDF_DESC= Build netcdf-support PORTDATA= * .include .if ${PORT_OPTIONS:MDOCS} PORTDOCS= * .endif .if ${PORT_OPTIONS:MEXAMPLES} PORTEXAMPLES= * .endif .if ${PORT_OPTIONS:MHDF} BROKEN= Fails to package LIB_DEPENDS+= libmfhdf.so:science/hdf CONFIGURE_ARGS+= --with-hdf PLIST_SUB+= NETCDF="@comment " HDF="" .endif .if ${PORT_OPTIONS:MNETCDF} LIB_DEPENDS+= libnetcdf.so:science/netcdf CONFIGURE_ARGS+= --with-nc PLIST_SUB+= NETCDF="" HDF="@comment " .endif post-extract: ${MKDIR} "${WRKSRC}/examples" cd "${WRKSRC}/examples" && ${TAR} -xzf "${DISTDIR}/example.tar.gz" post-configure: ${REINPLACE_CMD} -e "s:%%DATADIR%%:${DATADIR}:" ${WRKSRC}/src/gx.h ${REINPLACE_CMD} -e "s:ludunits:ludunits2:" ${WRKSRC}/src/Makefile post-install: ${MKDIR} "${STAGEDIR}${DATADIR}" cd ${WRKSRC}/data && ${COPYTREE_SHARE} . "${STAGEDIR}${DATADIR}" .if ${PORT_OPTIONS:MEXAMPLES} ${MKDIR} "${STAGEDIR}${EXAMPLESDIR}" cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . "${STAGEDIR}${EXAMPLESDIR}" .endif .if ${PORT_OPTIONS:MDOCS} ${MKDIR} "${STAGEDIR}${DOCSDIR}" cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . "${STAGEDIR}${DOCSDIR}" .endif .include Index: head/graphics/opendx/Makefile =================================================================== --- head/graphics/opendx/Makefile (revision 562678) +++ head/graphics/opendx/Makefile (revision 562679) @@ -1,108 +1,108 @@ # Created by: Thomas Gellekum # $FreeBSD$ PORTNAME= opendx PORTVERSION= 4.4.4 -PORTREVISION= 31 +PORTREVISION= 32 CATEGORIES= graphics math java MASTER_SITES= http://www.sfr-fresh.com/unix/misc/ DISTNAME= dx-${PORTVERSION} MAINTAINER= stephen@FreeBSD.org COMMENT= IBM's Open Visualization Data Explorer LICENSE= IBM-OVDX-v1 LICENSE_NAME= IBM PUBLIC LICENSE - Open Visualization Data Explorer VERSION 1.0 LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libMagickWand-6.so:graphics/ImageMagick6 \ libtiff.so:graphics/tiff \ libcdf.so:science/cdf MAKE_JOBS_UNSAFE= yes USES= bison compiler:c++17-lang gl gmake libtool motif xorg USE_XORG= x11 xt xinerama xext xpm xmu sm ice USE_GL= gl glu GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared USE_LDCONFIG= yes CONFIGURE_ENV= ARCH=freebsd CPPFLAGS+= ${CXXFLAGS} -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib NO_MTREE= yes PLIST_SUB= ARCH=freebsd PKGMESSAGE= ${WRKDIR}/pkg-message .if defined(WITH_HDF) && !defined(WITHOUT_NETCDF) IGNORE= HDF and NETCDF are conflicting .endif .if defined(WITH_HDF) LIB_DEPENDS+= libmfhdf.so:science/hdf .else CONFIGURE_ARGS+= --without-hdf .endif .if !defined(WITHOUT_NETCDF) LIB_DEPENDS+= libnetcdf.so:science/netcdf .else CONFIGURE_ARGS+= --without-netcdf .endif .if defined(WITH_JAVA) ONLY_FOR_ARCHS= i386 USE_JAVA= yes BUILD_DEPENDS+= ${JAVALIBDIR}/npcosmop211.jar:graphics/cosmoplayer RUN_DEPENDS+= ${JAVALIBDIR}/npcosmop211.jar:graphics/cosmoplayer CONFIGURE_ARGS+= --with-cosmojar-path=${JAVALIBDIR}/npcosmop211.jar \ --with-java40jar-path=${JAVALIBDIR}/java40.jar \ --with-jni-path=${JAVA_HOME}/include:${JAVA_HOME}/include/freebsd PLIST_SUB+= JAVA="" DIR2PRUNE= dx/java/user dx/java/server/nets .else CONFIGURE_ARGS+= --without-javadx PLIST_SUB+= JAVA="@comment " .endif PLIST_SUB+= UNAMEP=${ARCH} .include post-patch: @${RM} ${WRKSRC}/include/stamp-h.in .for dir in doc help html man @${FIND} ${WRKSRC}/${dir} -type f | ${XARGS} \ ${REINPLACE_CMD} -e "s;/usr/lpp;${PREFIX};g" .endfor @${REINPLACE_CMD} -e "s;/usr/X11R6;${LOCALBASE};g" \ ${WRKSRC}/configure @${REINPLACE_CMD} -e "s|startserver.bat||" \ ${WRKSRC}/src/uipp/java/server/Makefile.in @${REINPLACE_CMD} -e 's|$$(ARCH)|@ARCH@|' \ ${WRKSRC}/src/misc/Makefile.* @${REINPLACE_CMD} -e 's/void exit (int);/[[noreturn]] void exit (int);/' \ ${WRKSRC}/configure for f in `find ${WRKSRC} -name "*.bm"`; do \ if [ $${f%/*} != "${WRKSRC}/src/uipp/widgets" ]; then \ ${REINPLACE_CMD} -E 's/0x(..)/static_cast(0x\1)/g' $$f; \ ${REINPLACE_CMD} -E 's/static unsigned char/static char/g' $$f; \ fi; \ done post-install: @${CP} ${FILESDIR}/pkg-message.in ${PKGMESSAGE} .if defined(WITH_JAVA) ${CHMOD} 0775 ${STAGEDIR}${PREFIX}/dx/java/server/nets ${TOUCH} ${DIR2PRUNE:S|^|${STAGEDIR}${PREFIX}/|:S|$|/.keepme|} @${ECHO} "---------------------------------------------------------" \ >> ${PKGMESSAGE} @${ECHO} "Before starting ${PREFIX}/dx/java/server/bin/startserver" \ >> ${PKGMESSAGE} @${ECHO} "you must install the port graphics/opendx-samples." \ >> ${PKGMESSAGE} .endif @${ECHO} "---------------------------------------------------------" \ >> ${PKGMESSAGE} .include Index: head/math/grace/Makefile =================================================================== --- head/math/grace/Makefile (revision 562678) +++ head/math/grace/Makefile (revision 562679) @@ -1,79 +1,79 @@ # Created by: Lars Koeller # $FreeBSD$ PORTNAME= grace PORTVERSION= 5.1.25 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math print MASTER_SITES= ftp://ftp.fu-berlin.de/unix/graphics/grace/src/stable/ \ ftp://ftp.ntua.gr/pub/graphics/grace/src/stable/ \ ftp://ftp.u-aizu.ac.jp/pub/SciEng/math/grace/src/stable/ \ ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable/ MAINTAINER= ports@FreeBSD.org COMMENT= Powerful 2D plotting tool (successor of xmgr) LICENSE= GPLv2 LIB_DEPENDS= libt1.so:devel/t1lib \ libpng.so:graphics/png \ libXbae.so:x11-toolkits/xbae RUN_DEPENDS= xdg-open:devel/xdg-utils USES= gmake jpeg motif GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-grace-home=${DATADIR} \ --with-extra-incpath=${LOCALBASE}/include \ --with-extra-ldpath=${LOCALBASE}/lib \ --with-helpviewer="xdg-open %s" \ --without-bundled-xbae MAKE_ARGS= LINUXDOC="${TRUE}" PDFLATEX="${TRUE}" DESKTOP_ENTRIES="XMgrace" "2D Plotting tool for scientific data" \ "${PREFIX}/share/pixmaps/mini-xmgr3.xpm" "xmgrace" \ "" "" OPTIONS_DEFINE= DOCS EXAMPLES FFTW NETCDF PDF XMHTML OPTIONS_DEFAULT= FFTW NETCDF PDF XMHTML FFTW_CONFIGURE_WITH= fftw FFTW_LIB_DEPENDS= libfftw.so:math/fftw NETCDF_CONFIGURE_ENABLE= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PDF_DESC= PDF output PDF_CONFIGURE_ENABLE= pdfdrv PDF_LIB_DEPENDS= libpdf.so:print/pdflib XMHTML_DESC= XmHTML based on-line help XMHTML_CONFIGURE_ENABLE= xmhtml XMHTML_LIB_DEPENDS= libXmHTML.so:x11-toolkits/xmhtml post-configure: ${REINPLACE_CMD} -e \ '/SCRIPTS/s|INSTALL_PROGRAM|INSTALL_SCRIPT|' \ ${WRKSRC}/auxiliary/Makefile ${REINPLACE_CMD} -e \ '/cd /!s|$$(GRACE_HOME)/doc|${DOCSDIR}| ; \ /cd /s|$$(GRACE_HOME)/doc|$$(DESTDIR)$$(PREFIX)/man/man1| ; \ /^install/s|$$(MANPAGES)||' \ ${WRKSRC}/doc/Makefile ${REINPLACE_CMD} -e \ 's|$$(GRACE_HOME)/examples|${EXAMPLESDIR}| ; \ /DOTEST/s|INSTALL_PROGRAM|INSTALL_SCRIPT|' \ ${WRKSRC}/examples/Makefile ${REINPLACE_CMD} -e \ 's|$$(GRACE_HOME)/include|$$(PREFIX)/include| ; \ s|$$(GRACE_HOME)/lib|$$(PREFIX)/lib|' \ ${WRKSRC}/grace_np/Makefile ${FIND} ${WRKSRC} -name Makefile | ${XARGS} ${REINPLACE_CMD} -e \ 's|$$(GRACE_HOME)/bin|$$(PREFIX)/bin|' post-install: ${INSTALL_MAN} ${WRKSRC}/doc/[c-g]*.1 ${STAGEDIR}${MANPREFIX}/man/man1 ${INSTALL_DATA} ${FILESDIR}/mini-xmgr3.xpm \ ${STAGEDIR}${PREFIX}/share/pixmaps ${LN} -sf xmgrace ${STAGEDIR}${PREFIX}/bin/grace ${LN} -sf grace.1 ${STAGEDIR}${MANPREFIX}/man/man1/xmgrace.1 ${LN} -sf ${DOCSDIR} ${STAGEDIR}${DATADIR}/doc ${LN} -sf ${EXAMPLESDIR} ${STAGEDIR}${DATADIR}/examples .include Index: head/math/gri/Makefile =================================================================== --- head/math/gri/Makefile (revision 562678) +++ head/math/gri/Makefile (revision 562679) @@ -1,74 +1,74 @@ # Created by: M. L. Dodson, # $FreeBSD$ PORTNAME= gri PORTVERSION= 2.12.23 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= math MASTER_SITES= SF LICENSE= GPLv2 MAINTAINER= ports@FreeBSD.org COMMENT= Extensible plotting language for producing scientific graphs LIB_DEPENDS= libnetcdf.so:science/netcdf USES= gmake readline shebangfix makeinfo SHEBANG_FILES= doc/examples/FEM.pl src/gri_merge src/gri_unpage GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-FreeBSD CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib INFO= gri USE_TEX= formats:build dvipsk:build PORTDOCS= * PORTEXAMPLES= * OPTIONS_DEFINE= DOCS EXAMPLES .include .if ${PORT_OPTIONS:MDOCS} || ${PORT_OPTIONS:MEXAMPLES} BUILD_DEPENDS+= convert:graphics/ImageMagick6 .endif post-patch: @${REINPLACE_CMD} -e \ '/^SUBDIRS/s|doc||' ${WRKSRC}/Makefile.in @${REINPLACE_CMD} -e \ '/gzip/s|^|#| ; \ /EXAMPLES_DIR/s|^|#|' ${WRKSRC}/doc/Makefile.in post-build: .if ${PORT_OPTIONS:MDOCS} || ${PORT_OPTIONS:MEXAMPLES} (cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_FLAGS} \ ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET}) .else (cd ${WRKSRC}/doc && makeinfo gri.texi) .endif post-install: .if ${PORT_OPTIONS:MDOCS} (cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_FLAGS} \ ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET}) .else ${INSTALL_MAN} ${WRKSRC}/doc/gri-manpage.1 \ ${STAGEDIR}${MANPREFIX}/man/man1/gri.1 ${INSTALL_MAN} ${WRKSRC}/doc/gri_merge.1-skel \ ${STAGEDIR}${MANPREFIX}/man/man1/gri_merge.1 ${INSTALL_MAN} ${WRKSRC}/doc/gri_unpage.1-skel \ ${STAGEDIR}${MANPREFIX}/man/man1/gri_unpage.1 ${INSTALL_DATA} ${WRKSRC}/doc/gri.info* ${STAGEDIR}${PREFIX}/${INFO_PATH} .endif .if ${PORT_OPTIONS:MEXAMPLES} @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/doc/examples && ${INSTALL_DATA} model* *.dat *.gri e*.ps \ ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC}/doc/examples \ && ${INSTALL_SCRIPT} FEM.pl ${STAGEDIR}${EXAMPLESDIR}) .endif .include Index: head/math/moab/Makefile =================================================================== --- head/math/moab/Makefile (revision 562678) +++ head/math/moab/Makefile (revision 562679) @@ -1,38 +1,38 @@ # $FreeBSD$ PORTNAME= moab DISTVERSION= 5.2.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/ MAINTAINER= yuri@FreeBSD.org COMMENT= Component for representing and evaluating mesh data LICENSE= LGPL3+ LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf \ libopenblas.so:math/openblas USES= cmake:noninja compiler:c++11-lang eigen:3 fortran USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so \ -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so BB_ACCOUNT= fathomteam BB_PROJECT= ${PORTNAME} BB_COMMIT= 7bde9dfb84a8 WRKSRC= ${WRKDIR}/${BB_ACCOUNT}-${BB_PROJECT}-${BB_COMMIT} OPTIONS_DEFINE= MPI OPTIONS_DEFAULT= MPI OPTIONS_SUB= yes MPI_CMAKE_BOOL= ENABLE_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi .include Index: head/math/octave-forge-netcdf/Makefile =================================================================== --- head/math/octave-forge-netcdf/Makefile (revision 562678) +++ head/math/octave-forge-netcdf/Makefile (revision 562679) @@ -1,29 +1,30 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= octave-forge-netcdf PORTVERSION= 1.0.14 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org COMMENT= Octave-forge package ${OCTAVE_PKGNAME} LICENSE= GPLv2 LICENSE_FILE= ${WRKDIR}/${OCTSRC}/COPYING # OCTSRC is the name of the directory of the package. # It is usually ${OCTAVE_PKGNAME} or ${DISTNAME}. OCTSRC= ${DISTNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src GNU_CONFIGURE= yes LIB_DEPENDS+= libnetcdf.so:science/netcdf .include "${.CURDIR}/../../Mk/bsd.octave.mk" post-build: ${RM} ${WRKSRC}/Makefile ${WRKSRC}/configure cd ${WRKDIR} && ${TAR} cfz ${DISTNAME}.tar.gz ${OCTSRC} .include Index: head/math/p5-NetCDF/Makefile =================================================================== --- head/math/p5-NetCDF/Makefile (revision 562678) +++ head/math/p5-NetCDF/Makefile (revision 562679) @@ -1,27 +1,27 @@ # Created by: Douglas K. Rand (rand@meridian-enviro.com) # $FreeBSD$ PORTNAME= NetCDF PORTVERSION= 1.2.4 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math perl5 MASTER_SITES= ftp://ftp.unidata.ucar.edu/pub/netcdf-perl/ PKGNAMEPREFIX= p5- DISTNAME= netcdf-perl-${PORTVERSION} MAINTAINER= rand@meridian-enviro.com COMMENT= Perl5 module to read and write netCDF files LIB_DEPENDS= libnetcdf.so:science/netcdf USES= perl5 fakeroot WRKSRC_SUBDIR= src GNU_CONFIGURE= yes CONFIGURE_ENV= CPP_NETCDF=-I${LOCALBASE}/include LD_NETCDF=-lnetcdf \ PERL_MANDIR=${STAGEDIR}${SITE_PERL}/man PERL=${PERL} pre-install: @${PERL5} -pi -e 's/ doc_(perl|site|\$$\(INSTALLDIRS\))_install$$//' ${WRKSRC}/perl/Makefile .include Index: head/science/abinit/Makefile =================================================================== --- head/science/abinit/Makefile (revision 562678) +++ head/science/abinit/Makefile (revision 562679) @@ -1,96 +1,97 @@ # Created by: NAKATA Maho # $FreeBSD$ PORTNAME= abinit DISTVERSION= 9.2.2 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Full-featured atomic-scale first-principles simulation software LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING ONLY_FOR_ARCHS= amd64 powerpc64 powerpc64le BUILD_DEPENDS= gm4:devel/m4 \ ${PYNUMPY} \ ${PY_PYGMENTS} \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}graphviz>0:graphics/py-graphviz@${PY_FLAVOR} LIB_DEPENDS= libelpa.so:math/elpa \ libsz.so:science/szip \ libelpa.so:math/elpa \ libxc.so:science/libxc \ libfftw3.so:math/fftw3 \ libhdf5.so:science/hdf5 \ libxml2.so:textproc/libxml2 \ libnetcdf.so:science/netcdf \ libxmlf90.so:textproc/xmlf90 \ libwannier.so:science/wannier90 \ libnetcdff.so:science/netcdf-fortran RUN_DEPENDS= atompaw:science/atompaw TEST_DEPENDS= ${PYNUMPY} \ libyaml>0:textproc/libyaml USES= autoreconf:build blaslapack:netlib fortran gmake gnome localbase:ldflags \ python:3.6+ shebangfix USE_GITHUB= yes USE_GNOME= libxml2 SHEBANG_FILES= config/scripts/* doc/tutorial/paral_gspw_assets/abinit.sub.* SHEBANG_GLOB= *.py GNU_CONFIGURE= yes CONFIGURE_ENV= CC_LDFLAGS="${LDFLAGS}" CXX_LDFLAGS="${LDFLAGS}" FC_LDFLAGS="${LDFLAGS}" \ LINALG_FCFLAGS="-I${LOCALBASE}/include/elpa-2019.05.002/modules" \ LINALG_LIBS="${BLASLIB} ${LAPACKLIB} -lelpa" \ NETCDF_FORTRAN_FCFLAGS=-I${LOCALBASE}/include \ XMLF90_FCFLAGS=-I${LOCALBASE}/include \ WANNIER90_LIBS="${BLASLIB} ${LAPACKLIB} -lwannier" CONFIGURE_ARGS= --with-fft --with-libxc --with-libxml2 --with-netcdf \ --with-netcdf-fortran --with-wannier90 --with-xmlf90 FCFLAGS+= -ffree-line-length-none TEST_TARGET= tests_abirules tests_buildsys TEST_WRKSRC= ${WRKSRC}/abichecks PORTDOCS= * OPTIONS_DEFINE= DOCS OPENMP MPI OPTIONS_DEFAULT= OPENMP MPI OPENMP_CONFIGURE_ENABLE= openmp OPENMP_LDFLAGS= -lomp MPI_CONFIGURE_WITH= mpi=yes # fftw3 not enabled because libfftw3_mpi is required but not packaged MPI_VARS= FFLAGS+=-I${LOCALBASE}/include FCFLAGS+=-I${LOCALBASE}/include \ CONFIGURE_ENV+=MPI_LIBS="`pkg-config --libs mpich` -lmpifort" \ CONFIGURE_ENV+MPI_LDFLAGS="`pkg-config --libs mpich` -lmpifort" MPI_BUILD_DEPENDS= mpich>0:net/mpich MPI_RUN_DEPENDS= mpich>0:net/mpich .if defined(WITH_LEVMAR) # --with-levmar seems deprecated LIB_DEPENDS+= liblevmar.so:math/levmar CONFIGURE_ENV+= LEVMAR_LIBS="-llevmar ${BLASLIB} ${LAPACKLIB}" CONFIGURE_ARGS+= --with-levmar .endif .include .if ${GCC_DEFAULT} >= 10 FCFLAGS+= -fallow-argument-mismatch # see https://github.com/abinit/abinit/issues/41 .endif pre-configure: (cd ${WRKSRC} && ./autogen.sh) post-install-DOCS-on: ${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|' \ ${WRKSRC}/doc/tutorial/paral_moldyn_assets/diag_moldyn.py ${RM} ${WRKSRC}/doc/tutorial/paral_moldyn_assets/diag_moldyn.py.bak @${MKDIR} ${STAGEDIR}${DOCSDIR} ${CP} -R ${WRKSRC}/doc/tutorial ${STAGEDIR}${DOCSDIR} pre-test: ${TOUCH} ${TEST_WRKSRC}/make.log .include Index: head/science/cdo/Makefile =================================================================== --- head/science/cdo/Makefile (revision 562678) +++ head/science/cdo/Makefile (revision 562679) @@ -1,82 +1,82 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= cdo PORTVERSION= 1.9.9 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/23323/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= Climate Data Operators LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING OPTIONS_DEFINE= CGRIBEX ECCODES HDF5 JASPER NETCDF PROJ SZIP UDUNITS UUID OPTIONS_DEFAULT=CGRIBEX ECCODES HDF5 JASPER NETCDF PROJ SZIP UDUNITS UUID OPTIONS_SUB= yes CGRIBEX_DESC= Use CGRIBEX library for GRIB1 files ECCODES_DESC= Use ecCodes for GRIB files HDF5_IMPLIES= SZIP NETCDF_IMPLIES= HDF5 UUID_DESC= UUID support PORTSCOUT= site:https://code.mpimet.mpg.de/projects/cdo/files USES= compiler:c++11-lang gmake libtool localbase pathfix CONFIGURE_ARGS= --disable-data \ --disable-extra \ --disable-fortran \ --disable-ieg \ --disable-openmp \ --disable-service \ --enable-cdi-lib \ --program-transform-name="" \ --with-zlib=/usr GNU_CONFIGURE= yes INSTALL_TARGET= install-strip MAKE_JOBS_UNSAFE= yes TEST_TARGET= check USE_CXXSTD= c++11 USE_LDCONFIG= yes CGRIBEX_CONFIGURE_WITH= cgribex CGRIBEX_LIB_DEPENDS= libcgribex.so:science/cgribex ECCODES_CONFIGURE_WITH= eccodes ECCODES_LIB_DEPENDS= libeccodes.so:science/eccodes HDF5_CONFIGURE_WITH= hdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 JASPER_CONFIGURE_WITH= jasper JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper NETCDF_CONFIGURE_WITH= netcdf NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PROJ_CONFIGURE_WITH= proj PROJ_LIB_DEPENDS= libproj.so:graphics/proj SZIP_CONFIGURE_WITH= szlib SZIP_LIB_DEPENDS= libsz.so:science/szip UDUNITS_CONFIGURE_WITH= udunits2 UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UUID_CONFIGURE_OFF= ac_cv_func_uuid_create=no ac_cv_have_decl_uuid_create=no ac_cv_have_decl_uuid_generate=no ac_cv_lib_uuid_uuid_generate=no UUID_LIB_DEPENDS= libuuid.so:misc/e2fsprogs-libuuid .include .if ${ARCH} != "sparc64" CFLAGS+= -DPTHREAD_MUTEXATTR .endif post-patch: @${REINPLACE_CMD} -e '/^SUBDIRS = / s| contrib||' ${WRKSRC}/Makefile.in @${REINPLACE_CMD} -e 's|$$(libdir)/\($$$$pkgconfigfile\)|${PREFIX}/libdata/\1|' ${WRKSRC}/libcdi/src/Makefile.in @${REINPLACE_CMD} -e 's|unsigned32 |uint32_t |' ${WRKSRC}/libcdi/src/cdilib.c ${WRKSRC}/libcdi/src/util.c post-install: ${INSTALL_DATA} ${WRKSRC}/libcdi/src/cdi.inc ${STAGEDIR}${PREFIX}/include/cdi.inc test-NETCDF-on: @cd ${WRKSRC}/ && ${SETENV} CDO_PATH=src/cdo src/cdotest .include Index: head/science/eccodes/Makefile =================================================================== --- head/science/eccodes/Makefile (revision 562678) +++ head/science/eccodes/Makefile (revision 562679) @@ -1,58 +1,59 @@ # Created by: Po-Chuan Hsieh # $FreeBSD$ PORTNAME= eccodes PORTVERSION= 2.19.1 DISTVERSIONSUFFIX= -Source +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://confluence.ecmwf.int/download/attachments/45757960/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= ECMWF API for WMO FM-92 GRIB and FM-94 BUFR messages LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libnetcdf.so:science/netcdf \ libpng.so:graphics/png USES= cmake perl5 shebangfix CMAKE_ARGS= -DBUILD_SHARED_LIBS=BOTH CMAKE_OFF= ENABLE_ALIGN_MEMORY \ ENABLE_ECCODES_OMP_THREADS \ ENABLE_EXTRA_TESTS \ ENABLE_FORTRAN \ ENABLE_GRIB_TIMER \ ENABLE_MEMFS \ ENABLE_MEMORY_MANAGEMENT \ ENABLE_PYTHON CMAKE_ON= ECCODES_INSTALL_EXTRA_TOOLS \ ENABLE_ECCODES_THREADS \ ENABLE_EXAMPLES \ ENABLE_INSTALL_ECCODES_DEFINITIONS \ ENABLE_NETCDF \ ENABLE_PNG USE_CSTD= c99 USE_LDCONFIG= yes CONFLICTS_INSTALL= grib_api PORTSCOUT= site:https://confluence.ecmwf.int/display/ECC/Releases SHEBANG_FILES= tools/bufr_compare_dir OPTIONS_DEFINE= AEC OPTIONS_SINGLE= JPEG OPTIONS_SINGLE_JPEG= JASPER OPENJPEG OPTIONS_DEFAULT=OPENJPEG AEC_DESC= Adaptive Entropy Coding support AEC_CMAKE_BOOL= ENABLE_AEC AEC_LIB_DEPENDS= libaec.so:science/libaec JASPER_CMAKE_BOOL= ENABLE_JPG JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper OPENJPEG_LIB_DEPENDS= libopenjp2.so:graphics/openjpeg .include Index: head/science/gnudatalanguage/Makefile =================================================================== --- head/science/gnudatalanguage/Makefile (revision 562678) +++ head/science/gnudatalanguage/Makefile (revision 562679) @@ -1,159 +1,159 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= gnudatalanguage PORTVERSION= 1.0.0 -PORTREVISION= 1 DISTVERSIONPREFIX= v DISTVERSIONSUFFIX= -rc.3 +PORTREVISION= 2 CATEGORIES= science lang .if defined(BUILD_PYTHON_MODULE) PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} .endif MAINTAINER= thierry@FreeBSD.org COMMENT?= GDL, a free IDL compatible incremental compiler LICENSE= GPLv2 LIB_DEPENDS+= libgeotiff.so:graphics/libgeotiff\ libexpat.so:textproc/expat2 \ libplplot.so:math/plplot \ libtiff.so:graphics/tiff \ libshp.so:devel/shapelib \ libpng.so:graphics/png \ libsz.so:science/szip \ libps.so:print/pslib \ libgsl.so:math/gsl USE_GITHUB= yes GH_PROJECT= gdl USES= cmake compiler:c++11-lang fortran ncurses pkgconfig readline \ tar:tgz xorg USE_WX= 3.0+ USE_XORG= x11 sm ice xext # Disable ncurses and readline from ports # TODO: create a port for Cmsvlib http://cow.physics.wisc.edu/~craigm/idl/down/cmsvlib.tar.gz # TODO: create a port for Astron http://idlastro.gsfc.nasa.gov/ftp/astron.tar.gz # TODO: create a port for TexToIdl http://physics.mnstate.edu/mcraig/textoidl/textoidl-2-1-2.tar CMAKE_ARGS= -DREADLINEDIR:STRING="/usr" \ -DOPENMP:BOOL=NO \ -DNCURSESDIR:STRING="/usr" \ -DPYTHON:BOOL=NO CPPFLAGS+= ${CFLAGS} -fno-inline -DNPY_NO_DEPRECATED_API -DNPY_1_7_API_VERSION CXXFLAGS+= -std=gnu++11 -DACCEPT_USE_OF_DEPRECATED_PROJ_API_H=1 LDFLAGS+= -lpthread -L${LOCALBASE}/lib TEST_TARGET= check SLAVEDIRS= science/py-gnudatalanguage # Upstream prefer GraphicsMagick over ImageMackick but ATM it fails # see https://github.com/gnudatalanguage/gdl/issues/611 # + Python is broken on 1.0.0-rc2 See issue #757 #OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GLPK GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 MPI NETCDF PYTHON UDUNITS #OPTIONS_DEFAULT=EIGEN FFTW GLPK GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GLPK IMAGEMAGICK GRIB HDF5 LIBPROJ4 MPI NETCDF UDUNITS OPTIONS_DEFAULT=EIGEN FFTW GLPK IMAGEMAGICK GRIB HDF5 LIBPROJ4 NETCDF UDUNITS EIGEN_DESC= Eigen3 support (boost performance) EIGEN_USES= eigen:3 EIGEN_CMAKE_ON= -DEIGEN3:BOOL=YES EIGEN_CMAKE_OFF= -DEIGEN3:BOOL=NO FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float FFTW_CMAKE_ON= -DFFTW:BOOL=YES FFTW_CMAKE_OFF= -DFFTW:BOOL=NO GLPK_DESC= Support GLPK for Simplex (Linear programming) GLPK_LIB_DEPENDS= libglpk.so:math/glpk GLPK_CMAKE_ON= -DGLPK=ON:BOOL=YES GLPK_CMAKE_OFF= -DGLPK=OFF:BOOL=NO # Temporary swith to ImageMagick #GRAPHICSMAGICK_DESC= Support GraphicsMagick #GRAPHICSMAGICK_LIB_DEPENDS= libGraphicsMagick.so:graphics/GraphicsMagick #GRAPHICSMAGICK_CMAKE_ON= -DGRAPHICSMAGICK:BOOL=YES #GRAPHICSMAGICK_CMAKE_OFF= -DGRAPHICSMAGICK:BOOL=NO IMAGEMAGICK_DESC= Support ImageMagick IMAGEMAGICK_LIB_DEPENDS=libMagick++-6.so:graphics/ImageMagick6 IMAGEMAGICK_CMAKE_ON= -DGRAPHICSMAGICK:BOOL=NO -DMAGICK:BOOL=YES -DMAGICKDIR=${LOCALBASE} IMAGEMAGICK_CMAKE_OFF= -DMAGICK:BOOL=NO GRIB_DESC= Support GRIB messages GRIB_LIB_DEPENDS= libgrib_api.so:science/grib_api GRIB_CMAKE_ON= -DGRIB:BOOL=YES GRIB_CMAKE_OFF= -DGRIB:BOOL=NO HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CMAKE_ON= -DHDF5:BOOL=YES HDF5_CMAKE_OFF= -DHDF5:BOOL=NO -DHDF:BOOL=NO LIBPROJ4_DESC= Support cartographic processes LIBPROJ4_LIB_DEPENDS= libproj.so:graphics/proj LIBPROJ4_CMAKE_ON= -DLIBPROJ4:BOOL=YES LIBPROJ4_CMAKE_OFF= -DLIBPROJ4:BOOL=NO MPI_LIB_DEPENDS= libmpich.so:net/mpich MPI_CMAKE_ON= -DMPI:BOOL=ON MPI_CMAKE_OFF= -DMPI:BOOL=OFF -DMPIDIR=/none NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_CMAKE_ON= -DNETCDF:BOOL=YES -DHDF:BOOL=NO NETCDF_CMAKE_OFF= -DNETCDF:BOOL=NO #PYTHON_USES= python:3.6+ #PYTHON_BUILD_DEPENDS= ${PYNUMPY} #PYTHON_RUN_DEPENDS= ${PYNUMPY} \ # ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} #PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}" #PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO # QHULL IS NOT NEEDED YET! #QHULL_DESC= Enable Triangulate and Qhull support #QHULL_LIB_DEPENDS= libqhull.so:math/qhull #QHULL_CMAKE_ON= -DQHULL:BOOL=YES #QHULL_CMAKE_OFF= -DQHULL:BOOL=NO UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UDUNITS_CMAKE_ON= -DUDUNITS:BOOL=YES UDUNITS_CMAKE_OFF= -DUDUNITS:BOOL=NO .if defined(BUILD_PYTHON_MODULE) CATEGORIES+= python CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=YES PLIST= ${.CURDIR}/pkg-plist.pymod .else CMAKE_ARGS+= -DPYTHON_MODULE:BOOL=NO .endif .if defined(BUILD_PYTHON_MODULE) do-install: ${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} ${INSTALL_DATA} ${INSTALL_WRKSRC}/src/GDL.so ${STAGEDIR}${PYTHON_SITELIBDIR}/ .endif .if !defined(BUILD_PYTHON_MODULE) post-install: ${MKDIR} ${STAGEDIR}${EXAMPLESDIR}/testsuite (cd ${WRKSRC}/testsuite && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}/testsuite/) .endif .if defined(MAINTAINER_MODE) regression-test: install . if defined(BUILD_PYTHON_MODULE) @${ECHO_CMD} 'import GDL' > ${WRKDIR}/testgdl.py @${ECHO_CMD} 'print GDL.function("sin",(1,))' >> ${WRKDIR}/testgdl.py ${PYTHON_CMD} ${WRKDIR}/testgdl.py . else @${ECHO_CMD} ".RUN ${EXAMPLESDIR}/testsuite/test_suite.pro" \ > ${WRKDIR}/testgdl @${ECHO_CMD} "exit" >> ${WRKDIR}/testgdl ${PREFIX}/bin/gdl < ${WRKDIR}/testgdl . endif .endif .include Index: head/science/grib_api/Makefile =================================================================== --- head/science/grib_api/Makefile (revision 562678) +++ head/science/grib_api/Makefile (revision 562679) @@ -1,44 +1,44 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= grib_api PORTVERSION= 1.28.0 DISTVERSIONSUFFIX= -Source -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= https://confluence.ecmwf.int/download/attachments/3473437/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org COMMENT= ECMWF API for WMO FM-92 GRIB messages LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libnetcdf.so:science/netcdf \ libpng.so:graphics/png CONFLICTS_INSTALL= eccodes OPTIONS_SINGLE= JPEG OPTIONS_SINGLE_JPEG= JASPER OPENJPEG OPTIONS_DEFAULT=OPENJPEG PORTSCOUT= site:https://software.ecmwf.int/wiki/display/GRIB/Releases USES= libtool pathfix CONFIGURE_ARGS= --enable-pthread --with-netcdf=${LOCALBASE} --with-png-support GNU_CONFIGURE= yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes JASPER_CONFIGURE_ON= --with-jasper=${LOCALBASE} JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper OPENJPEG_CONFIGURE_ON= --with-openjpeg=${LOCALBASE} OPENJPEG_LIB_DEPENDS= libopenjpeg.so:graphics/openjpeg15 post-install: ${INSTALL_SCRIPT} ${WRKSRC}/tools/grib1to2 ${STAGEDIR}${PREFIX}/bin/grib1to2 .include Index: head/science/minc2/Makefile =================================================================== --- head/science/minc2/Makefile (revision 562678) +++ head/science/minc2/Makefile (revision 562679) @@ -1,45 +1,45 @@ # Created by: jbacon # $FreeBSD$ PORTNAME= minc PORTVERSION= 2.2.00 DISTVERSIONPREFIX= release- -PORTREVISION= 9 +PORTREVISION= 10 PORTEPOCH= 1 CATEGORIES= science biology PKGNAMESUFFIX= 2 MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS= bash:shells/bash USE_GITHUB= yes GH_ACCOUNT= BIC-MNI MAKE_JOBS_UNSAFE= yes USES= autoreconf bison gmake libtool perl5 shebangfix SHEBANG_FILES= progs/mincview/mincview GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes CFLAGS+= -Wno-error=return-type CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFLICTS= minc-1* zh-tk-[0-9]* pre-patch: @${RM} ${WRKSRC}/ac_config_aux/* @${RM} ${WRKSRC}/progs/minccalc/gram.[ch] @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch] .include Index: head/science/netcdf-cxx/Makefile =================================================================== --- head/science/netcdf-cxx/Makefile (revision 562678) +++ head/science/netcdf-cxx/Makefile (revision 562679) @@ -1,30 +1,31 @@ # Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= netcdf-cxx PORTVERSION= 4.3.1 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://www.unidata.ucar.edu/downloads/netcdf/ftp/ \ ftp://ftp.unidata.ucar.edu/pub/netcdf/ \ LOCAL/sunpoet DISTNAME= ${PORTNAME}4-${PORTVERSION} MAINTAINER= sunpoet@FreeBSD.org COMMENT= C++ library for machine-independent, array-oriented data access LICENSE= UCAR_UNIDATA LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_NAME= University Corporation for Atmospheric Research/Unidata LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libnetcdf.so:science/netcdf USES= libtool localbase pathfix CPPFLAGS+= -fPIC -DPIC GNU_CONFIGURE= yes INSTALL_TARGET= install-strip TEST_TARGET= check USE_LDCONFIG= yes .include Index: head/science/py-netCDF4/Makefile =================================================================== --- head/science/py-netCDF4/Makefile (revision 562678) +++ head/science/py-netCDF4/Makefile (revision 562679) @@ -1,57 +1,57 @@ # Created by: Wen Heping # $FreeBSD$ PORTNAME= netCDF4 PORTVERSION= 1.3.1 DISTVERSIONPREFIX= v DISTVERSIONSUFFIX= rel -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= bofh@FreeBSD.org COMMENT= Python Interface to the NetCDF Library (versions 3 and 4) LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS= ${PYNUMPY} OPTIONS_DEFINE= DOCS EXAMPLES USES= python:3.6+ USE_PYTHON= autoplist concurrent distutils cython cython_run DOCSDIR= ${PREFIX}/share/doc/py-${PORTNAME} EXAMPLESDIR= ${PREFIX}/share/examples/py-${PORTNAME} PORTDOCS= * PORTEXAMPLES= * GH_ACCOUNT= Unidata GH_PROJECT= netcdf4-python USE_GITHUB= yes post-patch: @${ECHO_CMD} -n > ${WRKSRC}/setup.cfg @${ECHO_CMD} "[options]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "use_ncconfig=True" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "ncconfig=${LOCALBASE}/bin/nc-config" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "[directories]" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_libdir=${LOCALBASE}/lib" >> ${WRKSRC}/setup.cfg @${ECHO_CMD} "HDF5_incdir=${LOCALBASE}/include" >> ${WRKSRC}/setup.cfg post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netCDF4/_netCDF4*.so ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/netcdftime/_netcdftime*.so post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/examples && ${INSTALL_DATA} * ${STAGEDIR}${EXAMPLESDIR}) .include Index: head/science/py-pymol/Makefile =================================================================== --- head/science/py-pymol/Makefile (revision 562678) +++ head/science/py-pymol/Makefile (revision 562679) @@ -1,58 +1,59 @@ # Created by: Nakata Maho # $FreeBSD$ PORTNAME= pymol DISTVERSIONPREFIX= v DISTVERSION= 2.4.0 +PORTREVISION= 1 CATEGORIES= science biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= OpenGL-based molecular visualization system LICENSE= PyMOL LICENSE_NAME= Open-Source PyMOL Copyright LICENSE_FILE= ${WRKSRC}/LICENSE LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept BUILD_DEPENDS= ${PYNUMPY} \ ${LOCALBASE}/include/glm/glm.hpp:math/glm \ ${LOCALBASE}/include/mmtf.hpp:science/mmtf-cpp LIB_DEPENDS= libfreetype.so:print/freetype2 \ libpng.so:graphics/png \ libmsgpackc.so:devel/msgpack \ libnetcdf.so:science/netcdf RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}Pmw>0:x11-toolkits/py-Pmw@${PY_FLAVOR} \ ${PYNUMPY} USES= compiler:c++11-lang gl gnome python:3.5+ shebangfix tar:bz2 USE_GITHUB= yes GH_ACCOUNT= schrodinger GH_PROJECT= ${PORTNAME}-open-source USE_GL= gl glew glu glut USE_GNOME= libxml2 USE_PYTHON= distutils concurrent # autoplist is broken: https://github.com/schrodinger/pymol-open-source/issues/99 SHEBANG_FILES= test/show test/run test/cyg CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}chempy # https://github.com/schrodinger/pymol-open-source/issues/100 OPTIONS_SINGLE= GUI OPTIONS_SINGLE_GUI= QT5 TK OPTIONS_DEFAULT= QT5 QT5_USES= pyqt:5 QT5_USE= PYQT=core_run,gui_run,opengl_run post-patch-TK-on: @${REINPLACE_CMD} -e ' \ 23s|if not PYQT_NAME:|if False:| ; \ s|from PyQt5 import|from X import|' \ ${WRKSRC}/modules/${PORTNAME}/Qt/__init__.py post-install: @${REINPLACE_CMD} -i '' -e 's|#!/bin/bash|#!/bin/sh|' ${STAGEDIR}${PREFIX}/bin/${PORTNAME} @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/_cmd*.so @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/chempy/champ/_champ*.so .include Index: head/science/rubygem-ruby-netcdf/Makefile =================================================================== --- head/science/rubygem-ruby-netcdf/Makefile (revision 562678) +++ head/science/rubygem-ruby-netcdf/Makefile (revision 562679) @@ -1,20 +1,20 @@ # Created by: Shin-ya Murakami # $FreeBSD$ PORTNAME= ruby-netcdf PORTVERSION= 0.7.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science rubygems MASTER_SITES= RG MAINTAINER= ruby@FreeBSD.org COMMENT= Ruby interface to the NetCDF scientific IO library LIB_DEPENDS= libnetcdf.so:science/netcdf RUN_DEPENDS= rubygem-narray>=0:math/rubygem-narray \ rubygem-narray_miss>=0:math/rubygem-narray_miss USE_RUBY= yes USES= gem .include Index: head/science/v_sim/Makefile =================================================================== --- head/science/v_sim/Makefile (revision 562678) +++ head/science/v_sim/Makefile (revision 562679) @@ -1,97 +1,98 @@ # Created by: Thierry Thomas # $FreeBSD$ PORTNAME= v_sim PORTVERSION= 3.8.0 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://gitlab.com/l_sim/${PORTNAME}/-/archive/${PORTVERSION}/ MAINTAINER= thierry@FreeBSD.org COMMENT= Visualization of atomic structures LICENSE= CeCILL LICENSE_NAME= CeCILL LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept BUILD_DEPENDS= p5-XML-LibXML>0:textproc/p5-XML-LibXML \ libarchive>0:archivers/libarchive \ xcrysden:science/xcrysden \ bash:shells/bash LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ libopenbabel.so:science/openbabel \ libfreetype.so:print/freetype2 \ libyaml.so:textproc/libyaml \ libnetcdf.so:science/netcdf \ libmsym.so:science/libmsym \ libftgl.so:graphics/ftgl \ libxc.so:science/libxc RUN_DEPENDS= ${PYNUMPY} \ xcrysden:science/xcrysden \ libarchive>0:archivers/libarchive \ ${PYTHON_PKGNAMEPREFIX}gobject3>0:devel/py-gobject3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} USES= autoreconf blaslapack compiler:c11 fortran gl gmake gnome \ libtool:keepla localbase:ldflags pkgconfig python:3.6+ \ shebangfix tar:bzip2 xorg SHEBANG_GLOB= *.py USE_XORG= x11 USE_GNOME= cairo gtk30 intltool introspection USE_GL= gl glu GNU_CONFIGURE= yes CONFIGURE_SHELL=${LOCALBASE}/bin/bash CONFIGURE_ARGS= --htmldir=${PREFIX}/share/doc --with-openbabel \ --with-netcdf=${LOCALBASE} --with-etsf-file-format \ --with-xsf --with-cube --with-msym=${LOCALBASE} \ --with-msym-inc=-I${LOCALBASE}/include/libmsym \ --with-libxc=${LOCALBASE} --enable-python-module CPPFLAGS+= ${CFLAGS} USE_LDCONFIG= yes INSTALLS_ICONS= yes OPTIONS_DEFINE= DOCS NLS EXAMPLES .if defined(WITH_DEBUG) CONFIGURE_ARGS+=--enable-debug-messages .endif .include .if ${ARCH:Mamd64*} || ${ARCH:Mpowerpc64*} BUILD_DEPENDS+= abinit:science/abinit RUN_DEPENDS+= abinit:science/abinit CONFIGURE_ARGS+=--with-abinit PLIST_SUB+= AB="" .else PLIST_SUB+= AB="@comment " .endif .if ${PORT_OPTIONS:MNLS} USES+= gettext PLIST_SUB+= NLS="" .else USES+= gettext-tools PLIST_SUB+= NLS="@comment " .endif pre-configure: ${REINPLACE_CMD} -e 's|$${docdir}/examples|${EXAMPLESDIR}|' \ ${WRKSRC}/configure.ac ${REINPLACE_CMD} -e 's|print sys.prefix|print (sys.prefix)|' \ -e 's|print sys.exec_prefix|print (sys.exec_prefix)|' \ ${WRKSRC}/m4/python.m4 pre-configure-NLS-off: ${REINPLACE_CMD} -e '/^ po /d' ${WRKSRC}/Makefile.am pre-configure-DOCS-off: ${REINPLACE_CMD} -e '/^ Documentation/d' ${WRKSRC}/Makefile.am pre-configure-EXAMPLES-off: ${REINPLACE_CMD} -e '/^ examples/d' \ ${WRKSRC}/Makefile.am ${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \ ${WRKSRC}/lib/python/Makefile.am .include Index: head/science/vmd/Makefile =================================================================== --- head/science/vmd/Makefile (revision 562678) +++ head/science/vmd/Makefile (revision 562679) @@ -1,168 +1,168 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= vmd DISTVERSION= 1.9.3 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= science graphics python tcl tk MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \ http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \ http://webclu.bio.wzw.tum.de/stride/:stride \ ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride DISTFILES= ${VMD_DIST} \ ${TACHYON_DIST}:tachyon \ ${STRIDE_DIST}:stride MAINTAINER= ports@FreeBSD.org COMMENT= Molecular visualization program LICENSE= VMD BSD3CLAUSE STRIDE LICENSE_COMB= multi BUILD_DEPENDS= makedepend:devel/makedepend \ ${PYNUMPY} LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfltk.so:x11-toolkits/fltk \ libnetcdf.so:science/netcdf RUN_DEPENDS= ${PYNUMPY} LICENSE_FILE_VMD= ${WRKSRC}/LICENSE LICENSE_PERMS_VMD= no-auto-accept LICENSE_NAME_VMD= Visual Molecular Dynamics Software License Agreement LICENSE_DISTFILES_VMD= ${VMD_DIST} LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/lib/tachyon/Copyright LICENSE_DISTFILES_BSD3CLAUSE= ${TACHYON_DIST} LICENSE_TEXT_STRIDE= ${FILESDIR}/stride.txt LICENSE_PERMS_STRIDE= dist-mirror pkg-mirror auto-accept LICENSE_NAME_STRIDE= Stride Copyright Notice LICENSE_DISTFILES_STRIDE=${STRIDE_DIST} USES= gl gmake perl5 python shebangfix sqlite tcl tk xorg SHEBANG_FILES= ${WRKDIR}/plugins/topotools/*.tcl USE_PERL5= build USE_GL= gl glu USE_XORG= x11 ONLY_FOR_ARCHS= amd64 i386 CONFIGURE_ENV= PYTHON_INCLUDE_DIR=${PYTHON_INCLUDEDIR} \ PYTHON_LIBRARY_DIR=${PYTHON_LIBDIR} \ NUMPY_INCLUDE_DIR=${PYTHON_SITELIBDIR}/numpy/core/include \ NUMPY_LIBRARY_DIR=${PYTHON_SITELIBDIR} \ TCL_INCLUDE_DIR=${TCL_INCLUDEDIR} \ TCL_LIBRARY_DIR=${LOCALBASE}/lib \ TK_INCLUDE_DIR=${TK_INCLUDEDIR} \ TK_LIBRARY_DIR=${LOCALBASE}/lib CONFIGURE_ARGS= ${VMD_ARCH} OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON NETCDF NUMPY PYTHON INSTALL_WRKSRC= ${WRKSRC}/src MAKE_ENV= EXPATINC=-I${LOCALBASE}/include \ EXPATLIB=-L${LOCALBASE}/lib \ EXPATLDFLAGS=-lexpat \ EXPATDYNAMIC=1 \ NETCDFINC=-I${LOCALBASE}/include \ NETCDFLIB=-L${LOCALBASE}/lib \ NETCDFLDFLAGS=-lnetcdf \ SQLITEINC=-I${LOCALBASE}/include \ SQLITELIB=-L${LOCALBASE}/lib \ SQLITELDFLAGS=-lsqlite3 \ SQLITEDYNAMIC=1 \ TCLLIB=-L${LOCALBASE}/lib \ TCLINC=-I${TCL_INCLUDEDIR} \ TCLLDFLAGS=-ltcl${TCL_VER:S/.//} \ TKLDFLAGS="-ltk${TK_VER:S/.//} -lX11" VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz TACHYON_DIST= tachyon-0.99b6.tar.gz STRIDE_DIST= stride.tar.gz STRIDE_DOC= stride.doc .include .if ${ARCH} == "amd64" VMD_ARCH= FREEBSDAMD64 .else VMD_ARCH= FREEBSD .endif PLIST_SUB+= VMD_ARCH=${VMD_ARCH} # Check for VMD sources .if !exists(${DISTDIR}/${VMD_DIST}) IGNORE= license restrictions require manual fetching of the distribution\ source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\ with a browser. You will be required to register, log in, and accept\ the University of Illinois agreement before you can download the\ ${VMD_DIST} source file. Place this file in ${DISTDIR} and try again. .endif do-extract: ${MKDIR} ${WRKDIR} ${WRKSRC}/lib/stride ${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR} ${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf ${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib ${TAR} -xzf ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride post-patch: ${REINPLACE_CMD} \ -e "s|-lpython2.5|-l${PYTHON_VERSION}${PYTHON_ABIVER}|" \ -e "s|/usr/local|${LOCALBASE}|g" \ -e "s|-fno-for-scope||g" \ -e "s/\"gcc\"/\"${CC}\"/;s/\"g++\"/\"${CXX}\"/" \ ${WRKSRC}/configure ${REINPLACE_CMD} -e "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile ${REINPLACE_CMD} "s%log2f(\([^ ,]*\))%logf(\1)/(float)M_LN2%g" \ ${WRKSRC}/src/Orbital.C ${REINPLACE_CMD} -E "s/(SHLD[[:space:]]*=[[:space:]]*)gcc/\1${CC}/" \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -E "s/(CC[[:space:]]*=[[:space:]]*)(gcc|cc)/\1${CC}/" \ ${WRKSRC}/lib/stride/Makefile \ ${WRKSRC}/lib/surf/Makefile \ ${WRKSRC}/lib/tachyon/unix/Make-arch \ ${WRKDIR}/plugins/cionize/Makefile.specialbuilds \ ${WRKDIR}/plugins/cionize/Makefile.mine \ ${WRKDIR}/plugins/cionize/Makefile.testing \ ${WRKDIR}/plugins/Make-arch \ ${WRKDIR}/plugins/molfile_plugin/f77/Makefile ${REINPLACE_CMD} -E "s/(CXX[[:space:]]*=[[:space:]]*)g\+\+/\1${CXX}/" \ ${WRKDIR}/plugins/fmtool/Makefile.specialbuilds \ ${WRKDIR}/plugins/hesstrans/src/foo/Makefile \ ${WRKDIR}/plugins/hesstrans/src/foo/nm_gnu.mak \ ${WRKDIR}/plugins/Make-arch ${REINPLACE_CMD} -e "s/return *;/return 0;/g" \ ${WRKSRC}/lib/surf/*.c do-build: ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} bsd -C ${WRKSRC}/lib/tachyon/unix ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH} ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins cd ${WRKSRC} && ${SETENV} ${CONFIGURE_ENV} ${CONFIGURE_CMD} ${CONFIGURE_ARGS} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} all -C ${WRKSRC}/src ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} depend -C ${WRKSRC}/lib/surf ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} surf -C ${WRKSRC}/lib/surf ${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH} ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} -C ${WRKSRC}/lib/stride ${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH} post-install: ${REINPLACE_CMD} -i '' -e 's|${STAGEDIR}||g' ${STAGEDIR}${PREFIX}/bin/vmd ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \ ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so .for f in tcl/autopsf1.6/psfcheck.so tcl/hesstrans1.0/hesstrans.so \ tcl/mutator1.5/libalchemify.so tcl/pmepot1.0/libpmepot.so \ tcl/psfgen1.6/libpsfgen.so tcl/rnaview1.1/rnaview \ tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \ tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \ tcl/clustalw1.1/clustalw tcl/libbiokit1.1/tcl_libbiokit.so \ tcl/libbiokit1.1/q tcl/libbiokit1.1/seqqr \ tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \ tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \ tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \ tcl/bossconvert1.0/Topology \ bin/catdcd5.1/catdcd bin/cionize1.0/cionize ${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f} .endfor .include