Index: head/biology/haplohseq/Makefile
===================================================================
--- head/biology/haplohseq/Makefile	(revision 561614)
+++ head/biology/haplohseq/Makefile	(revision 561615)
@@ -1,36 +1,36 @@
 # $FreeBSD$
 
 PORTNAME=	haplohseq
 DISTVERSION=	0.1.2
 PORTREVISION=	2
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Identify regions of allelic imbalance
 
 LICENSE=	MIT
 
 LIB_DEPENDS=	libboost_system.so:devel/boost-libs
 RUN_DEPENDS=	R-cran-optparse>0:devel/R-cran-optparse
 
-USES=		compiler:c++11-lang gmake localbase:ldflags python
+USES=		compiler:c++11-lang gmake localbase:ldflags python:3.6+
 USE_GITHUB=	yes
 
 GH_ACCOUNT=	outpaddling
 
 OPTIONS_DEFINE=	EXAMPLES
 
 MAKEFILE=	makefile
 LDFLAGS+=	-lpthread
 MAKE_ENV=	STRIP=${STRIP}
 
 SUB_FILES=	haplohseq-example
 
 post-install-EXAMPLES-on:
 	${INSTALL_SCRIPT} ${WRKDIR}/haplohseq-example ${STAGEDIR}${PREFIX}/bin
 	(cd ${WRKSRC} && ${COPYTREE_SHARE} "example ldmap scripts" ${STAGEDIR}${EXAMPLESDIR})
 
 do-test:
 	@(cd ${WRKSRC}/build/test && ${FILESDIR}/run-tests)
 
 .include <bsd.port.mk>
Index: head/biology/haplohseq/pkg-plist
===================================================================
--- head/biology/haplohseq/pkg-plist	(revision 561614)
+++ head/biology/haplohseq/pkg-plist	(revision 561615)
@@ -1,11 +1,10 @@
 bin/haplohseq
 %%PORTEXAMPLES%%bin/haplohseq-example
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/example/example_input/tumor_exome.vcf
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/example/example_run.sh
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ldmap/hg19.exome.ldmap
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/scripts/haplohseq_plot.R
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/scripts/ldmap.py
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/scripts/ldmap.py.orig
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/scripts/simple_phaser.py
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/scripts/simple_phaser.py.orig
-%%PORTEXAMPLES%%@dir %%EXAMPLESDIR%%/example/example_output