Index: head/biology/star/Makefile
===================================================================
--- head/biology/star/Makefile	(revision 561234)
+++ head/biology/star/Makefile	(revision 561235)
@@ -1,35 +1,29 @@
 # $FreeBSD$
 
 PORTNAME=	STAR
 DISTVERSION=	2.7.3a
+PORTREVISION=	1
 CATEGORIES=	biology
 PKGNAMEPREFIX=	rna-
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Spliced Transcripts Alignment to a Reference
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKDIR}/STAR-${DISTVERSION}/LICENSE
 
 # 64-bit only, needs 16+ GiB RAM for typical eukaryotic genome
 NOT_FOR_ARCHS=	i386 powerpc
 
-USES=		compiler:openmp gmake
+USES=		compiler:c++11-lang gmake
 USE_GITHUB=	yes
 GH_ACCOUNT=	alexdobin
 
 WRKSRC_SUBDIR=	source
 
 PLIST_FILES=	bin/STAR
 
-.include <bsd.port.pre.mk>
-
-# Force newer compiler on platforms using GCC 4.2 as base
-.if ${CHOSEN_COMPILER_TYPE} == gcc && ${COMPILER_VERSION} <= 42
-USE_GCC=	yes
-.endif
-
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/STAR ${STAGEDIR}${PREFIX}/bin
 
-.include <bsd.port.post.mk>
+.include <bsd.port.mk>
Index: head/biology/star/files/patch-Makefile
===================================================================
--- head/biology/star/files/patch-Makefile	(revision 561234)
+++ head/biology/star/files/patch-Makefile	(revision 561235)
@@ -1,17 +1,23 @@
---- Makefile.orig	2019-03-28 20:48:16 UTC
+--- Makefile.orig	2019-10-08 19:10:51 UTC
 +++ Makefile
-@@ -20,11 +20,11 @@ LDFLAGS_gdb := $(LDFLAGS_shared)
+@@ -20,11 +20,16 @@ LDFLAGS_gdb := $(LDFLAGS_shared)
  
  COMPTIMEPLACE := -D'COMPILATION_TIME_PLACE="$(shell echo `date` $(HOSTNAME):`pwd`)"'
  
 -CXXFLAGS_common := -pipe -std=c++11 -Wall -Wextra -fopenmp $(COMPTIMEPLACE)
 -CXXFLAGS_main := -O3 $(CXXFLAGS_common)
-+CXXFLAGS_common := -std=c++11 -Wall -Wextra -fopenmp $(COMPTIMEPLACE)
-+CXXFLAGS_main += $(CXXFLAGS_common)
- CXXFLAGS_gdb :=  -O0 -g $(CXXFLAGS_common)
+-CXXFLAGS_gdb :=  -O0 -g $(CXXFLAGS_common)
++# Defaults, overridden by make arguments or environment
++CXXFLAGS ?= -pipe -O3 -Wall -Wextra
++CFLAGS ?= -pipe -O3 -Wall -Wextra
  
 -CFLAGS := -O3 -pipe -Wall -Wextra $(CFLAGS)
-+CFLAGS += -Wall -Wextra
++# Unconditionally set essential flags
++CXXFLAGS_common := -std=c++11 -fopenmp $(COMPTIMEPLACE)
++CXXFLAGS_main += $(CXXFLAGS_common)
++
++# -O or -O2 should work fine with gdb as well
++CXXFLAGS_gdb :=  -O0 -g $(CXXFLAGS_common)
  
  
  ##########################################################################################################

Property changes on: head/biology/star/files/patch-Makefile
___________________________________________________________________
Modified: fbsd:nokeywords
## -1 +1 ##
-on
\ No newline at end of property
+yes
\ No newline at end of property