Index: head/biology/gemma/Makefile
===================================================================
--- head/biology/gemma/Makefile	(revision 559974)
+++ head/biology/gemma/Makefile	(revision 559975)
@@ -1,39 +1,38 @@
 # $FreeBSD$
 
 PORTNAME=	gemma
-DISTVERSION=	0.98.1
-PORTREVISION=	6
+DISTVERSION=	0.98.3
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Genome-wide Efficient Mixed Model Association
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 LIB_DEPENDS=	libgsl.so:math/gsl
 
 USES=		blaslapack:openblas compiler:c++11-lang eigen:3 gmake \
 		localbase:ldflags
 USE_GITHUB=	yes
 GH_ACCOUNT=	genetics-statistics
 GH_PROJECT=	GEMMA
 
 MAKEFILE=	${FILESDIR}/Makefile
 # Assuming openblas is built with pthreads, not openmp
 CXXFLAGS+=	-I${LOCALBASE}/include/eigen3 -DOPENBLAS -pthread
 LDFLAGS+=	-lopenblas -pthread
 
 OPTIONS_DEFINE=	EXAMPLES
 
 pre-configure:
 	@${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh
 
 do-install-EXAMPLES-on:
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
 
 do-test:
 	(cd ${WRKSRC}/test && ${SH} test_suite.sh)
 
 .include <bsd.port.mk>
Index: head/biology/gemma/distinfo
===================================================================
--- head/biology/gemma/distinfo	(revision 559974)
+++ head/biology/gemma/distinfo	(revision 559975)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1558018021
-SHA256 (genetics-statistics-GEMMA-0.98.1_GH0.tar.gz) = 6beeed4a9e727a96fdea9e86e39bbe9cbc9f0540ad3a1053814e95b0863a7e6b
-SIZE (genetics-statistics-GEMMA-0.98.1_GH0.tar.gz) = 49569015
+TIMESTAMP = 1609514940
+SHA256 (genetics-statistics-GEMMA-0.98.3_GH0.tar.gz) = 8c27874634269f52a194a41048e70c17e2128563f56bb8ef59338a93147c61ba
+SIZE (genetics-statistics-GEMMA-0.98.3_GH0.tar.gz) = 49572695
Index: head/biology/gemma/files/patch-src_fastopenblas.h
===================================================================
--- head/biology/gemma/files/patch-src_fastopenblas.h	(revision 559974)
+++ head/biology/gemma/files/patch-src_fastopenblas.h	(nonexistent)
@@ -1,15 +0,0 @@
---- src/fastopenblas.h.orig	2018-12-11 05:34:29 UTC
-+++ src/fastopenblas.h
-@@ -23,10 +23,12 @@
- 
- #include <assert.h>
- #include <iostream>
-+/* Conflicts with gsl_cblas.h, included from gsl_matrix.h
- extern "C"
- {
-    #include <cblas.h>   // For OpenBlas / Atlas
- }
-+*/
- #include "gsl/gsl_matrix.h"
- 
- void fast_cblas_dgemm(const enum CBLAS_ORDER Order,

Property changes on: head/biology/gemma/files/patch-src_fastopenblas.h
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
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Deleted: svn:eol-style
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-native
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Deleted: svn:mime-type
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