Index: head/biology/vt/Makefile =================================================================== --- head/biology/vt/Makefile (revision 554659) +++ head/biology/vt/Makefile (revision 554660) @@ -1,28 +1,28 @@ # $FreeBSD$ PORTNAME= vt DISTVERSION= 0.57721 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Discovers short variants from Next Generation Sequencing data LICENSE= MIT -LIB_DEPENDS= libhts.so.3:biology/htslib \ +LIB_DEPENDS= libhts.so:biology/htslib \ libsvm.so:science/libsvm \ libdeflate.so:archivers/libdeflate \ libcurl.so:ftp/curl USES= compiler:c++0x gmake ssl USE_GITHUB= yes GH_ACCOUNT= atks PLIST_FILES= bin/vt do-install: ${INSTALL_PROGRAM} ${WRKSRC}/vt ${STAGEDIR}${PREFIX}/bin .include Index: head/biology/vt/files/patch-hts__utils.h =================================================================== --- head/biology/vt/files/patch-hts__utils.h (nonexistent) +++ head/biology/vt/files/patch-hts__utils.h (revision 554660) @@ -0,0 +1,11 @@ +--- hts_utils.h.orig 2020-11-08 22:09:58 UTC ++++ hts_utils.h +@@ -47,7 +47,7 @@ typedef struct { + + KHASH_MAP_INIT_STR(s, faidx1_t) + +-struct __faidx_t { ++struct faidx_t { + BGZF *bgzf; + int n, m; + char **name; Property changes on: head/biology/vt/files/patch-hts__utils.h ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property