Index: head/biology/hyphy/files/patch-src_core_matrix.cpp =================================================================== --- head/biology/hyphy/files/patch-src_core_matrix.cpp (revision 553692) +++ head/biology/hyphy/files/patch-src_core_matrix.cpp (nonexistent) @@ -1,11 +0,0 @@ ---- src/core/matrix.cpp.orig 2020-10-16 23:15:05 UTC -+++ src/core/matrix.cpp -@@ -2236,7 +2236,7 @@ bool _Matrix::IncreaseStorage (void) { - } else { - theData = (hyFloat*) MemReallocate(theData, lDim*sizeof(void*)); - for (long i = lDim-allocationBlock; i < lDim; i++) { -- theData [i] = ZEROPOINTER; -+ theData [i] = ZEROOBJECT; - } - } - } else { Property changes on: head/biology/hyphy/files/patch-src_core_matrix.cpp ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/biology/hyphy/Makefile =================================================================== --- head/biology/hyphy/Makefile (revision 553692) +++ head/biology/hyphy/Makefile (revision 553693) @@ -1,26 +1,26 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.5.20 +DISTVERSION= 2.5.21 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org COMMENT= Hypothesis testing using Phylogenies LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl USES= cmake compiler:openmp localbase:ldflags ssl USE_GITHUB= yes GH_ACCOUNT= veg OPTIONS_DEFINE= AVX AVX_DESC= Advanced vector extensions support AVX_CMAKE_OFF= -DNOAVX:BOOL=ON .include Index: head/biology/hyphy/distinfo =================================================================== --- head/biology/hyphy/distinfo (revision 553692) +++ head/biology/hyphy/distinfo (revision 553693) @@ -1,3 +1,3 @@ -TIMESTAMP = 1602886612 -SHA256 (veg-hyphy-2.5.20_GH0.tar.gz) = 6c8e2cfbb9d61ab9d6677f3fca5ea51e729943bef213bed6d03dd0f6d6078925 -SIZE (veg-hyphy-2.5.20_GH0.tar.gz) = 5325417 +TIMESTAMP = 1604064731 +SHA256 (veg-hyphy-2.5.21_GH0.tar.gz) = 313cd3d0c84dda72fbd801ce79dbd1da6c8e13a43c269f08de694d8d9005e5db +SIZE (veg-hyphy-2.5.21_GH0.tar.gz) = 5328307 Index: head/biology/hyphy/pkg-plist =================================================================== --- head/biology/hyphy/pkg-plist (revision 553692) +++ head/biology/hyphy/pkg-plist (revision 553693) @@ -1,435 +1,435 @@ bin/hyphy %%DATADIR%%/GeneticCodes/Alt_Yeast_Nuclear.cod %%DATADIR%%/GeneticCodes/Ascidian_mtDNA.cod %%DATADIR%%/GeneticCodes/Blepharisma_Nuclear.cod %%DATADIR%%/GeneticCodes/Ciliate.cod %%DATADIR%%/GeneticCodes/Echinoderm_mtDNA.cod %%DATADIR%%/GeneticCodes/Euplotid_Nuclear.cod %%DATADIR%%/GeneticCodes/Flatworm_mtDNA.cod %%DATADIR%%/GeneticCodes/Invertebrate_mtDNA.cod %%DATADIR%%/GeneticCodes/Mold_mtDNA.cod %%DATADIR%%/GeneticCodes/Thraustochytrium_mtDNA.cod 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