Index: head/biology/hyphy/files/patch-src_core_matrix.cpp
===================================================================
--- head/biology/hyphy/files/patch-src_core_matrix.cpp	(revision 552164)
+++ head/biology/hyphy/files/patch-src_core_matrix.cpp	(nonexistent)
@@ -1,20 +0,0 @@
---- src/core/matrix.cpp.orig	2020-09-02 16:12:43 UTC
-+++ src/core/matrix.cpp
-@@ -3128,8 +3128,6 @@ void    _Matrix::AddMatrix  (_Matrix& storage, _Matrix
-                      CELL_OP (idx+8);
-                      CELL_OP (idx+12);
-                  }
--            }
--
-  #else
-                 for (long idx = 0; idx < upto; idx+=4) {
-                     stData[idx]+=argData[idx];
-@@ -3138,7 +3136,7 @@ void    _Matrix::AddMatrix  (_Matrix& storage, _Matrix
-                     stData[idx+3]+=argData[idx+3];
-                 }
- #endif
--                
-+            }
-             if (subtract)
-                 for (long idx = upto; idx < secondArg.lDim; idx++) {
-                     stData[idx]-=argData[idx];

Property changes on: head/biology/hyphy/files/patch-src_core_matrix.cpp
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: head/biology/hyphy/Makefile
===================================================================
--- head/biology/hyphy/Makefile	(revision 552164)
+++ head/biology/hyphy/Makefile	(revision 552165)
@@ -1,26 +1,26 @@
 # $FreeBSD$
 
 PORTNAME=	hyphy
-DISTVERSION=	2.5.18
+DISTVERSION=	2.5.19
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
 COMMENT=	Hypothesis testing using Phylogenies
 
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 ONLY_FOR_ARCHS=	amd64 i386
 
 LIB_DEPENDS=	libcurl.so:ftp/curl
 
 USES=		cmake compiler:openmp localbase:ldflags ssl
 USE_GITHUB=	yes
 GH_ACCOUNT=	veg
 
 OPTIONS_DEFINE=	AVX
 AVX_DESC=	Advanced vector extensions support
 
 AVX_CMAKE_OFF=	-DNOAVX:BOOL=ON
 
 .include <bsd.port.mk>
Index: head/biology/hyphy/distinfo
===================================================================
--- head/biology/hyphy/distinfo	(revision 552164)
+++ head/biology/hyphy/distinfo	(revision 552165)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1599060037
-SHA256 (veg-hyphy-2.5.18_GH0.tar.gz) = 8eb978eb55d659fccb7e6a29b5ff8a87425f3317d5237c3b706ea918d4d5cf82
-SIZE (veg-hyphy-2.5.18_GH0.tar.gz) = 5250528
+TIMESTAMP = 1602549659
+SHA256 (veg-hyphy-2.5.19_GH0.tar.gz) = 44464c24b380aa25161639cee3ab224d9b5c29fe8079281be2bdde8f171a2e1b
+SIZE (veg-hyphy-2.5.19_GH0.tar.gz) = 5315357