Index: head/biology/hhsuite/Makefile
===================================================================
--- head/biology/hhsuite/Makefile	(revision 546313)
+++ head/biology/hhsuite/Makefile	(revision 546314)
@@ -1,39 +1,38 @@
 # $FreeBSD$
 
 PORTNAME=	hhsuite
 DISTVERSIONPREFIX=	v
-DISTVERSION=	3.2.0
-PORTREVISION=	4
+DISTVERSION=	3.3.0
 CATEGORIES=	biology science
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Remote protein homology detection suite
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 LIB_DEPENDS=	libmpi.so:net/openmpi
 
 USES=		cmake perl5 python shebangfix
 SHEBANG_GLOB=	*.pl *.py
 USE_GITHUB=	yes
 GH_ACCOUNT=	soedinglab
 GH_PROJECT=	hh-suite
 
 LDFLAGS+=	-Wl,-rpath,${LOCALBASE}/mpi/openmpi/lib -L${LOCALBASE}/mpi/openmpi/lib -lmpi # force linking to openmpi, and not to mpich
 
 .include <bsd.port.options.mk>
 
 .if ${ARCH} == amd64 || ${ARCH} == i386 || ${ARCH} == powerpc64
 CMAKE_ON=	HAVE_SSE2
 .endif
 
 .if ${ARCH} == powerpc64
 USES+=		compiler:gcc-c++11-lib
 post-patch:
 	${REINPLACE_CMD} -e 's/-msse -msse2/-D_ARCH_PWR8 -DNO_WARN_X86_INTRINSICS -maltivec -mpower8-vector -mvsx/g' ${WRKSRC}/src/CMakeLists.txt
 .else
 USES+=		compiler:c++11-lang
 .endif
 
 .include <bsd.port.mk>
Index: head/biology/hhsuite/distinfo
===================================================================
--- head/biology/hhsuite/distinfo	(revision 546313)
+++ head/biology/hhsuite/distinfo	(revision 546314)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1558244086
-SHA256 (soedinglab-hh-suite-v3.2.0_GH0.tar.gz) = 6b870dcfbc1ffb9dd664a45415fcd13cf5970f49d1c7b824160c260fa138e6d6
-SIZE (soedinglab-hh-suite-v3.2.0_GH0.tar.gz) = 6273589
+TIMESTAMP = 1598500089
+SHA256 (soedinglab-hh-suite-v3.3.0_GH0.tar.gz) = dd67f7f3bf601e48c9c0bc4cf1fbe3b946f787a808bde765e9436a48d27b0964
+SIZE (soedinglab-hh-suite-v3.3.0_GH0.tar.gz) = 6490149
Index: head/biology/hhsuite/files/patch-src_cs_getopt__pp.cc
===================================================================
--- head/biology/hhsuite/files/patch-src_cs_getopt__pp.cc	(revision 546313)
+++ head/biology/hhsuite/files/patch-src_cs_getopt__pp.cc	(nonexistent)
@@ -1,11 +0,0 @@
---- src/cs/getopt_pp.cc.orig	2019-05-19 05:36:03 UTC
-+++ src/cs/getopt_pp.cc
-@@ -21,7 +21,7 @@
- #include <unistd.h>
- #include "getopt_pp.h"
- 
--#ifdef __APPLE__
-+#if defined(__APPLE__) || defined(__FreeBSD__)
- extern char** environ;
- #endif
- 

Property changes on: head/biology/hhsuite/files/patch-src_cs_getopt__pp.cc
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: head/biology/hhsuite/files/patch-src_CMakeLists.txt
===================================================================
--- head/biology/hhsuite/files/patch-src_CMakeLists.txt	(revision 546313)
+++ head/biology/hhsuite/files/patch-src_CMakeLists.txt	(nonexistent)
@@ -1,30 +0,0 @@
---- src/CMakeLists.txt.orig	2019-04-01 04:04:44 UTC
-+++ src/CMakeLists.txt
-@@ -2,20 +2,26 @@ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++0x")
- set(CHECK_MPI 1 CACHE BOOL "Check MPI availability")
- 
- if (${HAVE_AVX2})
-+    MESSAGE(STATUS "SIMD: HAVE_AVX2 is set")
-     ADD_DEFINITIONS("-DAVX2")
-     set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -mavx2 -Wa,-q")
- elseif (${HAVE_SSE2})
-+    MESSAGE(STATUS "SIMD: HAVE_SSE2 is set")
-     ADD_DEFINITIONS("-DSSE")
-     set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -msse -msse2")
- else ()
-+    MESSAGE(STATUS "SIMD: No HAVE_AVX2 or HAVE_SSE2 are set, trying to detect them")
-     include(CheckSSEFeatures)
-     ADD_DEFINITIONS(${CXX_DFLAGS})
-     if (${HAVE_AVX2_EXTENSIONS})
-+        MESSAGE(STATUS "SIMD: Found AVX2")
-         ADD_DEFINITIONS("-DAVX2")
-     elseif (${HAVE_SSE2_EXTENSIONS})
-+        MESSAGE(STATUS "SIMD: Found SSE2")
-         ADD_DEFINITIONS("-DSSE")
-     else ()
--        message(FATAL_ERROR "At least SSE2 instruction set support is required! CMake will exit.")
-+        #message(FATAL_ERROR "At least SSE2 instruction set support is required! CMake will exit.")
-+        message(STATUS "SIMD: This platform doesn't have a supported SIMD instruction set, expect it to be slow.")
-     endif (${HAVE_AVX2_EXTENSIONS})
- endif ()
- 

Property changes on: head/biology/hhsuite/files/patch-src_CMakeLists.txt
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property