Index: branches/2020Q3/biology/cufflinks/Makefile =================================================================== --- branches/2020Q3/biology/cufflinks/Makefile (revision 541482) +++ branches/2020Q3/biology/cufflinks/Makefile (revision 541483) @@ -1,43 +1,43 @@ # $FreeBSD$ PORTNAME= cufflinks DISTVERSIONPREFIX= v DISTVERSION= 2.2.1-89 DISTVERSIONSUFFIX= -gdc3b0cb CATEGORIES= biology PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/ PATCHFILES+= ea4671149f3054c773d99cea521db75bf7b0658f.patch:-p1 # https://github.com/cole-trapnell-lab/cufflinks/pull/127 MAINTAINER= yuri@FreeBSD.org COMMENT= Cufflinks assembles transcripts, estimates their abundance, etc LICENSE= BSL LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhts.so:biology/htslib -USES= autoreconf eigen:3 gmake python shebangfix +USES= autoreconf compiler:c++11-lang eigen:3 gmake python shebangfix SHEBANG_FILES= src/cuffmerge GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= cole-trapnell-lab CXXFLAGS+= -I${LOCALBASE}/include/eigen3 CFLAGS+= -I${LOCALBASE}/include/eigen3 # https://github.com/cole-trapnell-lab/cufflinks/issues/113 PLIST_FILES= bin/compress_gtf \ bin/cuffcompare \ bin/cuffdiff \ bin/cufflinks \ bin/cuffmerge \ bin/cuffnorm \ bin/cuffquant \ bin/gffread \ bin/gtf_to_sam post-patch: # https://github.com/cole-trapnell-lab/cufflinks/issues/116 @${GREP} -rl 'fabs(' ${WRKSRC} | ${GREP} "\.cpp$$" | ${XARGS} ${REINPLACE_CMD} 's|std::fabs(|fabs(| ; s|fabs(|::fabs(|' .include Index: branches/2020Q3 =================================================================== --- branches/2020Q3 (revision 541482) +++ branches/2020Q3 (revision 541483) Property changes on: branches/2020Q3 ___________________________________________________________________ Modified: svn:mergeinfo ## -0,0 +0,1 ## Merged /head:r541482