Index: head/biology/diamond/Makefile =================================================================== --- head/biology/diamond/Makefile (revision 541096) +++ head/biology/diamond/Makefile (revision 541097) @@ -1,22 +1,22 @@ # $FreeBSD$ PORTNAME= diamond DISTVERSIONPREFIX= v -DISTVERSION= 0.9.35 +DISTVERSION= 0.9.36 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org COMMENT= BLAST-compatible local sequence aligner LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= amd64 USES= cmake USE_GITHUB= yes GH_ACCOUNT= bbuchfink PLIST_FILES= bin/diamond .include Index: head/biology/diamond/distinfo =================================================================== --- head/biology/diamond/distinfo (revision 541096) +++ head/biology/diamond/distinfo (revision 541097) @@ -1,3 +1,3 @@ -TIMESTAMP = 1593274744 -SHA256 (bbuchfink-diamond-v0.9.35_GH0.tar.gz) = 21d25780de6dacf4f965a1c583cf511b19f04def9289387c793e5a175061452d -SIZE (bbuchfink-diamond-v0.9.35_GH0.tar.gz) = 1102711 +TIMESTAMP = 1593736895 +SHA256 (bbuchfink-diamond-v0.9.36_GH0.tar.gz) = 870af89606330f6c0b57ed478d2d8237334ce8f5630eac770399ff431948bd59 +SIZE (bbuchfink-diamond-v0.9.36_GH0.tar.gz) = 1104423 Index: head/biology/diamond/files/patch-src_search_collision.cpp =================================================================== --- head/biology/diamond/files/patch-src_search_collision.cpp (nonexistent) +++ head/biology/diamond/files/patch-src_search_collision.cpp (revision 541097) @@ -0,0 +1,10 @@ +--- src/search/collision.cpp.orig 2020-07-03 10:58:27 UTC ++++ src/search/collision.cpp +@@ -92,7 +92,6 @@ bool is_primary_hit(const Letter *query, + const unsigned sid, + const unsigned len) + { +- assert(len > 0 && len <= config.window * 2); + const bool chunked(config.lowmem > 1); + uint64_t mask = reduced_match32(query, subject, len); + unsigned i = 0; Property changes on: head/biology/diamond/files/patch-src_search_collision.cpp ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property