Index: head/science/Makefile =================================================================== --- head/science/Makefile (revision 538336) +++ head/science/Makefile (revision 538337) @@ -1,348 +1,349 @@ # $FreeBSD$ # COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-FAdist SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += agrum SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += apbs SUBDIR += atompaw SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += bagel SUBDIR += bddsolve SUBDIR += berkeleygw SUBDIR += bodr SUBDIR += brian SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdk SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += coordgenlibs SUBDIR += cp2k SUBDIR += cp2k-data SUBDIR += crf++ SUBDIR += dalton SUBDIR += datawarrior SUBDIR += dcl SUBDIR += devisor SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += dlpoly-classic SUBDIR += drawxtl SUBDIR += dvc SUBDIR += eccodes SUBDIR += elk SUBDIR += elmerfem SUBDIR += epte SUBDIR += erd SUBDIR += ergo SUBDIR += erkale SUBDIR += erkale-pseudopotentials SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fastjet SUBDIR += fisicalab SUBDIR += fleur SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += h5utils SUBDIR += h5z-zfp SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += healpix SUBDIR += hepmc3 SUBDIR += highfive SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jmol SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kim-api SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libvdwxc SUBDIR += libxc SUBDIR += liggghts SUBDIR += lm SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf-cpp SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molscript SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += nest SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += nwchem-data SUBDIR += octopus SUBDIR += openbabel SUBDIR += openkim SUBDIR += openkim-models SUBDIR += opensim-core SUBDIR += opensph SUBDIR += opsin SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += packmol SUBDIR += pagmo2 SUBDIR += paje SUBDIR += paraview SUBDIR += pcmsolver SUBDIR += plumed SUBDIR += pnetcdf SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-GPy SUBDIR += py-GPyOpt SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PyFR SUBDIR += py-PyQuante SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-asdf SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chainer SUBDIR += py-chainer-chemistry SUBDIR += py-chempy SUBDIR += py-coards SUBDIR += py-dlib SUBDIR += py-eccodes-python SUBDIR += py-geolinks SUBDIR += py-geomet SUBDIR += py-geometer SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5json SUBDIR += py-h5py SUBDIR += py-kim-query SUBDIR += py-kinematics SUBDIR += py-kliff SUBDIR += py-liac-arff SUBDIR += py-lifelines SUBDIR += py-mdp SUBDIR += py-mlpy SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-moltemplate SUBDIR += py-netCDF4 SUBDIR += py-obspy SUBDIR += py-oddt SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-paramz SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pycsw SUBDIR += py-pydicom SUBDIR += py-pygeodesy SUBDIR += py-pygeometa + SUBDIR += py-pygmo2 SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyteomics SUBDIR += py-qcelemental SUBDIR += py-qcengine SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-rmsd SUBDIR += py-ruffus SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-optimize SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-spglib SUBDIR += py-tensorflow SUBDIR += py-veusz SUBDIR += py-ws2300 SUBDIR += pybrain SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qiskit-aer SUBDIR += qmcpack SUBDIR += quantum-espresso SUBDIR += quantum-espresso-pseudopotentials SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += scidavis SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simgrid SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += smoldyn SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tinker SUBDIR += udunits SUBDIR += v_sim SUBDIR += vipster SUBDIR += vmd SUBDIR += voro++ SUBDIR += votca SUBDIR += wannier90 SUBDIR += wwplot SUBDIR += wxmacmolplt SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xfce4-equake-plugin SUBDIR += xtb SUBDIR += yoda .include Index: head/science/py-pygmo2/Makefile =================================================================== --- head/science/py-pygmo2/Makefile (nonexistent) +++ head/science/py-pygmo2/Makefile (revision 538337) @@ -0,0 +1,28 @@ +# $FreeBSD$ + +PORTNAME= pygmo2 +DISTVERSIONPREFIX= v +DISTVERSION= 2.15.0-121 +DISTVERSIONSUFFIX= -gbe6c148 +CATEGORIES= science graphics +#MASTER_SITES= CHEESESHOP # https://github.com/esa/pygmo2/issues/53 +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Python platform to perform parallel computations of optimisation tasks + +LICENSE= MPL20 +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= pybind11>0:devel/pybind11 +LIB_DEPENDS= libpagmo.so:science/pagmo2 \ + libboost_serialization.so:devel/boost-libs + +USES= cmake python +USE_GITHUB= yes +GH_ACCOUNT= esa +GH_PROJECT= pygmo2 + +CMAKE_ON= PYGMO_ENABLE_IPO + +.include Property changes on: head/science/py-pygmo2/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/py-pygmo2/distinfo =================================================================== --- head/science/py-pygmo2/distinfo (nonexistent) +++ head/science/py-pygmo2/distinfo (revision 538337) @@ -0,0 +1,3 @@ +TIMESTAMP = 1591727894 +SHA256 (esa-pygmo2-v2.15.0-121-gbe6c148_GH0.tar.gz) = 14472df04c3c5a2d4f55611ed520e97d8942f2452176191b3e8cf3e326acf2c4 +SIZE (esa-pygmo2-v2.15.0-121-gbe6c148_GH0.tar.gz) = 3025838 Property changes on: head/science/py-pygmo2/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/py-pygmo2/pkg-descr =================================================================== --- head/science/py-pygmo2/pkg-descr (nonexistent) +++ head/science/py-pygmo2/pkg-descr (revision 538337) @@ -0,0 +1,18 @@ +pygmo is a scientific Python library for massively parallel optimization. It is +built around the idea of providing a unified interface to optimization +algorithms and problems, and to make their deployment in massively parallel +environments easy. + +Efficient implementantions of bio-inspired and evolutionary algorithms are sided +to state-of-the-art optimization algorithms (Simplex Methods, SQP methods, +interior points methods, ...) and can be easily mixed (also with your +newly-invented algorithms) to build a super-algorithm exploiting algorithmic +cooperation via the asynchronous, generalized island model. + +pygmo can be used to solve constrained, unconstrained, single objective, +multiple objective, continuous and integer optimization problems, stochastic and +deterministic problems, as well as to perform research on novel algorithms and +paradigms, and easily compare them to state-of-the-art implementations of +established ones. + +WWW: https://esa.github.io/pygmo2/ Property changes on: head/science/py-pygmo2/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: head/science/py-pygmo2/pkg-plist =================================================================== --- head/science/py-pygmo2/pkg-plist (nonexistent) +++ head/science/py-pygmo2/pkg-plist (revision 538337) @@ -0,0 +1,26 @@ +%%PYTHON_SITELIBDIR%%/pygmo/__init__.py +%%PYTHON_SITELIBDIR%%/pygmo/_algorithm_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_bfe_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_check_deps.py +%%PYTHON_SITELIBDIR%%/pygmo/_ipyparallel_utils.py +%%PYTHON_SITELIBDIR%%/pygmo/_island_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_mp_utils.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_algorithm.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_bfe.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_island.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_problem.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_r_policy.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_s_policy.py +%%PYTHON_SITELIBDIR%%/pygmo/_patch_topology.py +%%PYTHON_SITELIBDIR%%/pygmo/_problem_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_py_algorithms.py +%%PYTHON_SITELIBDIR%%/pygmo/_py_bfes.py +%%PYTHON_SITELIBDIR%%/pygmo/_py_islands.py +%%PYTHON_SITELIBDIR%%/pygmo/_py_problems.py +%%PYTHON_SITELIBDIR%%/pygmo/_r_policy_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_s_policy_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_topology_test.py +%%PYTHON_SITELIBDIR%%/pygmo/_version.py +%%PYTHON_SITELIBDIR%%/pygmo/core.so +%%PYTHON_SITELIBDIR%%/pygmo/plotting/__init__.py +%%PYTHON_SITELIBDIR%%/pygmo/test.py Property changes on: head/science/py-pygmo2/pkg-plist ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property