Index: head/science/afni/Makefile =================================================================== --- head/science/afni/Makefile (revision 536697) +++ head/science/afni/Makefile (revision 536698) @@ -1,158 +1,158 @@ # $FreeBSD$ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 20.1.07 +DISTVERSION= 20.1.10 CATEGORIES= science biology graphics perl5 python MAINTAINER= ports@FreeBSD.org COMMENT= Advanced Functional Neuro Imaging LICENSE= GPLv2 BROKEN_powerpc64= fails to compile: ./predicates_init.c:46: error: implicit declaration of function 'fpsetprec' CRAN_DEPENDS= R-cran-lme4>0:math/R-cran-lme4 \ R-cran-snow>0:science/R-cran-snow \ R-cran-psych>0:math/R-cran-psych BUILD_DEPENDS= gm4:devel/m4 \ R:math/R \ ${CRAN_DEPENDS} LIB_DEPENDS= libexpat.so:textproc/expat2 \ libf2c.so:lang/f2c \ libgsl.so:math/gsl \ libnetcdff.so:science/netcdf-fortran \ libxml2.so:textproc/libxml2 \ libXm.so:x11-toolkits/open-motif \ libnetpbm.so:graphics/netpbm # Remote execution of suma. Also needed for glxinfo. LIB_PC_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/dri.pc:graphics/mesa-dri RUN_DEPENDS= endian:sysutils/endian \ mpeg_encode:multimedia/mpeg_encode \ qhull:math/qhull5 \ R:math/R \ ${CRAN_DEPENDS} USES= compiler:openmp gettext gl gmake gnome iconv jpeg:run motif USES+= perl5 python shebangfix tar:xz xorg USE_GNOME= glib20 USE_GITHUB= yes USE_GL= gl SHEBANG_FILES= scripts_install/* \ python_scripts/afnipy/*.py \ python_scripts/scripts/*.py \ jzosky/*.py \ jzosky/lib_RetroTS/*.py \ discoraj/ClusterExplorer/*.py \ roopchansinghv/PsychoPy-NeuroFeedback-Demo/*.py \ roopchansinghv/PsychoPy-NeuroFeedback-Demo/*/*.py \ pkundu/*.py \ pkundu/meica.libs/*.py \ pkundu/meica.libs/*/*.py \ pkundu/meica.libs/*/*/*.py USE_GL= gl glu USE_XORG= x11 xext xi xmu xt MAKE_ENV= CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share MAKE_JOBS_UNSAFE=yes WRKSRC_SUBDIR= src ALL_TARGET= vastness suma ########################################################################### # Install parameters SUB_FILES= pkg-message afni.cshrc afni.profile INSTALL_WRKSRC= ${WRKSRC}/BSD INSTALL_TMP= ${INSTALL_WRKSRC}-temp PRESTAGE= ${WRKSRC}/prestage OPTIONS_DEFINE= DOCS .include CONFLICTS= im-[0-9]* \ nifticlib-[0-9]* \ open-usp-tukubai-[0-9]* X11R6_FILES= coxplot/Makefile \ coxplot/Makefile.f2c post-extract: .for f in ${X11R6_FILES} @${REINPLACE_CMD} \ -e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f} .endfor @${REINPLACE_CMD} \ -E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h @${CP} ${FILESDIR}/Makefile ${WRKSRC} @${RM} ${WRKSRC}/3DEdge/src/Makefile.orig pre-configure: @${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \ ${WRKSRC}/SUMA/SUMA_Makefile @${REINPLACE_CMD} \ -e 's|os\.path\.dirname(os\.path\.abspath(os\.path\.expanduser(sys\.argv\[0\])))|"${DATADIR}"|g' \ ${WRKSRC}/pkundu/meica.py do-install: # AFNI install just dumps everything into one flat directory # ${WRKSRC}/BSD == ${INSTALL_WRKSRC}. # Preserve ${INSTALL_WRKSRC} and make a sacrificial temp copy # to be pruned and rearranged for easy staging @${RM} -r ${INSTALL_TMP} @${CP} -R ${INSTALL_WRKSRC} ${INSTALL_TMP} # Clean up and organize files into ${PRESTAGE}, destroying # ${INSTALL_TMP} in the process @${RM} -rf ${PRESTAGE} @${MKDIR} ${PRESTAGE}/bin \ ${PRESTAGE}/scripts \ ${PRESTAGE}/lib \ ${PRESTAGE}/include \ ${PRESTAGE}/trash \ ${PRESTAGE}/doc \ ${PRESTAGE}/share \ ${PRESTAGE}/pylib @${RM} ${INSTALL_TMP}/libf2c.a @${MV} ${INSTALL_TMP}/meica.libs \ ${INSTALL_TMP}/shiny \ ${INSTALL_TMP}/lib_RetroTS \ ${INSTALL_TMP}/funstuff \ ${INSTALL_TMP}/AFNI.*rc \ ${INSTALL_TMP}/afnigui* \ ${PRESTAGE}/share @${MV} ${INSTALL_TMP}/*.a \ ${INSTALL_TMP}/*.so \ ${PRESTAGE}/lib @${MV} ${INSTALL_TMP}/*.h ${PRESTAGE}/include @${MV} ${INSTALL_TMP}/afnipy ${INSTALL_TMP}/afniRTI ${PRESTAGE}/pylib @${CP} ${WRKDIR}/afni-AFNI_${PORTVERSION}/doc/README/* ${PRESTAGE}/doc @for binary in `${FILE} ${INSTALL_TMP}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \ ${MV} $${binary} ${PRESTAGE}/bin ; \ done @${MV} ${INSTALL_TMP}/* ${PRESTAGE}/scripts # Install to STAGEDIR using proper ports tools @${MKDIR} \ ${STAGEDIR}${DATADIR} \ ${STAGEDIR}${PREFIX}/lib/afni \ ${STAGEDIR}${PREFIX}/include/afni \ ${STAGEDIR}${DOCSDIR} \ ${STAGEDIR}${PREFIX}/etc/mri ${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin (cd ${PRESTAGE}/pylib && \ ${COPYTREE_SHARE} . ${STAGEDIR}${PYTHON_SITELIBDIR}) ${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni ${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni (cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}) ${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \ ${STAGEDIR}${PREFIX}/etc/mri do-install-DOCS-on: ${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR} .include Index: head/science/afni/distinfo =================================================================== --- head/science/afni/distinfo (revision 536697) +++ head/science/afni/distinfo (revision 536698) @@ -1,3 +1,3 @@ -TIMESTAMP = 1590133631 -SHA256 (afni-afni-AFNI_20.1.07_GH0.tar.gz) = 4d3fb07cf19329ffc1ba073f5d381bc3f2ccd503c01d63b4e9061b0c2d56b7c8 -SIZE (afni-afni-AFNI_20.1.07_GH0.tar.gz) = 43285781 +TIMESTAMP = 1590567193 +SHA256 (afni-afni-AFNI_20.1.10_GH0.tar.gz) = 9dd56ffeb01508a3ce168def1bc27d530de810c82be24ffe1fd519a5c8a011fe +SIZE (afni-afni-AFNI_20.1.10_GH0.tar.gz) = 43295940