Index: head/biology/bolt-lmm/Makefile =================================================================== --- head/biology/bolt-lmm/Makefile (revision 534184) +++ head/biology/bolt-lmm/Makefile (revision 534185) @@ -1,54 +1,54 @@ # $FreeBSD$ PORTNAME= bolt-lmm DISTVERSION= 2.3.4 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/ DISTNAME= BOLT-LMM_v${PORTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= Mixed model association testing and variance component analysis LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/license.txt LIB_DEPENDS= libnlopt.so:math/nlopt \ libopenblas.so:math/openblas \ libboost_program_options.so:devel/boost-libs # gcc-c++11-lib needed to link with boost. Also requires compiler:openmp, but # both merely add a GCC requirement. USES= compiler:gcc-c++11-lib gmake BUILD_WRKSRC= ${WRKDIR}/${DISTNAME}/src INSTALL_WRKSRC= ${WRKDIR}/${DISTNAME}/src CXXFLAGS_i386= -DUSE_SSE -msse -msse2 CXXFLAGS_amd64= -DUSE_SSE CXXFLAGS_powerpc64= -DNO_WARN_X86_INTRINSICS -mvsx MAKE_ARGS= BOOST_INSTALL_DIR=${LOCALBASE} \ NLOPT_INSTALL_DIR=${LOCALBASE} \ ZLIB_STATIC_DIR=/usr/lib \ LIBSTDCXX_STATIC_DIR=/usr/lib \ GLIBC_STATIC_DIR=/usr/lib \ SSEFLAGS="" \ MEMCPY="" \ LLAPACK="-lopenblas -lgfortran" PORTEXAMPLES= * OPTIONS_DEFINE= EXAMPLES pre-configure: @${RM} ${WRKSRC}/example/*.orig ${WRKSRC}/bolt @${REINPLACE_CMD} -e 's|tables/|${DATADIR}/tables/|g' \ ${BUILD_WRKSRC}/BoltParams.cpp @${REINPLACE_CMD} -e 's|../tables/|${DATADIR}/tables/|g' \ ${WRKSRC}/example/run_example.sh do-install: ${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/bolt ${STAGEDIR}${PREFIX}/bin (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC} && ${COPYTREE_SHARE} tables ${STAGEDIR}${DATADIR}) .include Index: head/biology/gcta/Makefile =================================================================== --- head/biology/gcta/Makefile (revision 534184) +++ head/biology/gcta/Makefile (revision 534185) @@ -1,35 +1,36 @@ # $FreeBSD$ PORTNAME= gcta DISTVERSION= 1.26.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= https://cnsgenomics.com/software/gcta/pre_gcta/ DISTNAME= ${PORTNAME}_${PORTVERSION}_src MAINTAINER= jwb@FreeBSD.org COMMENT= Genome-wide Complex Trait Analysis LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/GNU_General_Public_License_v3.txt BUILD_DEPENDS= eigen>=3:math/eigen3 LIB_DEPENDS+= libopenblas.so:math/openblas USES= compiler:openmp dos2unix gmake localbase zip CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -fopenmp LDFLAGS+= -lopenblas INSTALL_TARGET= install-strip PLIST_FILES= bin/gcta .include .if ${CHOSEN_COMPILER_TYPE} == gcc && ${COMPILER_VERSION} <= 42 USE_GCC= yes .endif do-extract: ${UNZIP_NATIVE_CMD} -d ${WRKSRC} ${DISTDIR}/${DISTFILES} .include Index: head/cad/gmsh/Makefile =================================================================== --- head/cad/gmsh/Makefile (revision 534184) +++ head/cad/gmsh/Makefile (revision 534185) @@ -1,72 +1,73 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= gmsh DISTVERSION= 4.5.4 +PORTREVISION= 1 CATEGORIES= cad MASTER_SITES= LOCAL/wen \ http://gmsh.info/src/ DISTNAME= ${PORTNAME}-${PORTVERSION}-source DIST_SUBDIR= gmsh MAINTAINER= wen@FreeBSD.org COMMENT= Automatic 3D finite element mesh generator LICENSE= AGPLv3+ APACHE20 GPLv3+ GPLv2+ LGPL21 LICENSE_COMB= multi LIB_DEPENDS= libfltk.so:x11-toolkits/fltk \ libfontconfig.so:x11-fonts/fontconfig \ libgmp.so:math/gmp \ libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libsz.so:science/szip \ libfreetype.so:print/freetype2 RUN_DEPENDS= getdp:science/getdp USES= blaslapack compiler:c++11-lang cmake fortran gl jpeg tar:tgz \ xorg USE_GL= gl glu USE_XORG= x11 xcursor xext xinerama xfixes xft xrender CMAKE_ARGS= -DCMAKE_SKIP_RPATH:BOOL=YES OPTIONS_DEFINE= CGNS DOCS MED OCC SHARED STATIC OPTIONS_DEFAULT= CGNS MED OCC OPTIONS_SUB= yes CGNS_DESC= Enable CGNS mesh import MED_DESC= Enable MED mesh and post file formats OCC_DESC= Enable OpenCASCADE geometrical models SHARED_DESC= Build shared library and install header files STATIC_DESC= Build static library PLIST_SUB= VER=${PORTVERSION} VE=${PORTVERSION:R} # TODO # Dependencies against PythonLibs, swig and petsc are found and registered if # installed # => add knobs to handle them. CGNS_CMAKE_BOOL= ENABLE_CGNS CGNS_LIB_DEPENDS= libcgns.so:science/cgnslib DOCS_CMAKE_BOOL= INSTALL_DOCS MED_CMAKE_BOOL= ENABLE_MED MED_LIB_DEPENDS= libmed.so:french/med OCC_CMAKE_BOOL= ENABLE_OCC OCC_CMAKE_ON= -DOCC_INC=${LOCALBASE}/include/OpenCASCADE OCC_LIB_DEPENDS= libopenblas.so:math/openblas libTKernel.so:cad/opencascade OCC_USES= gnome OCC_USE= gnome=cairo SHARED_CMAKE_BOOL= ENABLE_BUILD_SHARED SHARED_USE= LDCONFIG=yes STATIC_CMAKE_BOOL= ENABLE_BUILD_LIB post-patch: @${REINPLACE_CMD} -e "s|share/doc/gmsh|${DOCSDIR_REL}|" \ -e 's|share/man/man1|man/man1|' ${WRKSRC}/CMakeLists.txt post-install-SHARED-on: ${RM} -r ${STAGEDIR}/wrkdirs .include Index: head/games/leela-zero/Makefile =================================================================== --- head/games/leela-zero/Makefile (revision 534184) +++ head/games/leela-zero/Makefile (revision 534185) @@ -1,35 +1,35 @@ # $FreeBSD$ PORTNAME= leela-zero DISTVERSIONPREFIX= v DISTVERSION= 0.17 -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= games MAINTAINER= yuri@FreeBSD.org COMMENT= Go engine without human-provided knowledge based on AlphaGo Zero paper LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= opencl>0:devel/opencl LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs \ libopenblas.so:math/openblas \ libOpenCL.so:devel/ocl-icd USES= cmake compiler:c++14-lang eigen:3 localbase qt:5 USE_GITHUB= yes GH_TUPLE= google:googletest:cafa9e5:gtest/gtest USE_QT= core widgets buildtools_build qmake_build CMAKE_ON= USE_BLAS BUILD_TESTING CMAKE_ARGS= -DBLAS_INCLUDE_DIRS:STRING=${LOCALBASE}/include PLIST_FILES= bin/autogtp \ bin/leelaz \ bin/validation do-test: @cd ${WRKSRC} && ${MKDIR} .build && ${CP} ../.build/tests .build && cd .build && ./tests .include Index: head/graphics/caffe/Makefile =================================================================== --- head/graphics/caffe/Makefile (revision 534184) +++ head/graphics/caffe/Makefile (revision 534185) @@ -1,85 +1,85 @@ # $FreeBSD$ PORTNAME= caffe PORTVERSION= 1.0 -PORTREVISION= 32 +PORTREVISION= 33 CATEGORIES= graphics MAINTAINER= eric@camachat.org COMMENT= Fast open framework for deep learning LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE CONFLICTS_INSTALL= caffe2-* BUILD_DEPENDS= ${PYNUMPY} \ bash:shells/bash LIB_DEPENDS= libsnappy.so:archivers/snappy \ libleveldb.so:databases/leveldb \ liblmdb.so:databases/lmdb \ libboost_system.so:devel/boost-libs \ ${PY_BOOST} \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libprotobuf.so:devel/protobuf \ libopencv_highgui.so:graphics/opencv \ libopencv_core.so:graphics/opencv-core \ libopenblas.so:math/openblas \ libhdf5.so:science/hdf5 RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=2.5.0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0.12:graphics/py-scikit-image@${PY_FLAVOR} \ ${PY_PILLOW} \ ${PYTHON_PKGNAMEPREFIX}networkx>=1.8:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyWavelets>=0.4:math/py-PyWavelets@${PY_FLAVOR} USES= compiler:c++11-lib fortran gmake pkgconfig python:2.7 USE_CXXSTD= c++11 USE_LDCONFIG= yes USE_PYTHON= flavors cython CXXFLAGS+= -DGTEST_USE_OWN_TR1_TUPLE=1 LDFLAGS+= -DGTEST_USE_OWN_TR1_TUPLE=1 LDFLAGS+= -lboost_thread MAKE_ENV+= PYTHON_LIBRARIES="${PY_BOOST_LIB} ${PYTHON_VERSION}" MAKE_ARGS+= DISTRIBUTE_DIR=${STAGEDIR}${PREFIX} ALL_TARGET= all py INSTALL_TARGET= dist TEST_TARGET= runtest PLIST_SUB= PYTHON_SITELIBDIR=${PYTHON_SITELIBDIR} DATADIR=${DATADIR} GH_ACCOUNT= BVLC USE_GITHUB= yes .include .if ${CHOSEN_COMPILER_TYPE} == clang TRUE_CXX= clang++ .else TRUE_CXX= g++${GCC_DEFAULT} .endif post-extract: @${CP} -v ${.CURDIR}/files/Makefile.config ${WRKSRC}/ post-patch: @${REINPLACE_CMD} \ -e "s|%%CXX%%|${TRUE_CXX}|g" \ -e "s|%%LOCALBASE%%|${LOCALBASE}|g" \ -e "s|%%DATADIR%%|${DATADIR}|g" \ -e "s|%%PYTHON_INCLUDEDIR%%|${PYTHON_INCLUDEDIR}|g" \ -e "s|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|g" \ -e "s|%%STAGEDIR%%|${STAGEDIR}|g" \ ${WRKSRC}/Makefile.config ${WRKSRC}/Makefile pre-install: @${MKDIR} ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}/${PREFIX}/bin/* ${STAGEDIR}/${PREFIX}/lib/*.so.* \ ${STAGEDIR}/${PYTHON_SITELIBDIR}/${PORTNAME}/*.so .include Index: head/lang/julia06/Makefile =================================================================== --- head/lang/julia06/Makefile (revision 534184) +++ head/lang/julia06/Makefile (revision 534185) @@ -1,201 +1,201 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 0.6.4 DISTVERSIONSUFFIX= -full -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 06 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md DEPRECATED= Uses deprecated version of python EXPIRATION_DATE= 2020-09-15 ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/${PORTNAME} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ SOVERSION="${PORTVERSION}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= EXAMPLES DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= ARPACK OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs EXAMPLESDIR= ${PREFIX}/share/examples/${PORTNAME}${PKGNAMESUFFIX} PORTEXAMPLES= * EXAMPLES_VARS= INSTALL_TARGET+=install-examples GPL_LIBS_DESC= Build with GPL libs: FFTW and SUITESPARSE GPL_LIBS_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 USE_SYSTEM_FFTW=1 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes ARPACK_DESC= Build self-shipped private arpack-ng ARPACK_MAKE_ARGS= USE_SYSTEM_ARPACK=0 ARPACK_MAKE_ARGS_OFF= USE_SYSTEM_ARPACK=1 ARPACK_LIB_DEPENDS_OFF= libarpack.so:math/arpack-ng SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.0\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${GMAKE} -C ${WRKSRC}/deps extract post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-EXAMPLES-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/examples/julia ${STAGEDIR}${EXAMPLESDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/examples .include Index: head/lang/julia07/Makefile =================================================================== --- head/lang/julia07/Makefile (revision 534184) +++ head/lang/julia07/Makefile (revision 534185) @@ -1,186 +1,186 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 0.7.0 DISTVERSIONSUFFIX= -full -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 07 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md DEPRECATED= Uses deprecated version of python EXPIRATION_DATE= 2020-09-15 ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/${PORTNAME} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ SOVERSION="${PORTVERSION}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs GPL_LIBS_DESC= Build with GPL lib: SUITESPARSE GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.2\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${GMAKE} -C ${WRKSRC}/deps extract post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc .include Index: head/lang/julia10/Makefile =================================================================== --- head/lang/julia10/Makefile (revision 534184) +++ head/lang/julia10/Makefile (revision 534185) @@ -1,188 +1,188 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 1.0.4 DISTVERSIONSUFFIX= -full -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 10 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 \ shebangfix USE_LDCONFIG= yes DESCR= ${.CURDIR}/../julia/pkg-descr SHEBANG_GLOB= *.sh WRKSRC= ${WRKDIR}/julia-${PORTVERSION} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs GPL_LIBS_DESC= Build with GPL lib: SUITESPARSE GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.2\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${MAKE_CMD} -C ${WRKSRC}/deps extract ${MAKE_CMD} -C ${WRKSRC}/stdlib install post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc .include Index: head/lang/julia11/Makefile =================================================================== --- head/lang/julia11/Makefile (revision 534184) +++ head/lang/julia11/Makefile (revision 534185) @@ -1,191 +1,191 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 1.1.1 DISTVERSIONSUFFIX= -full -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 11 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md DEPRECATED= Uses deprecated version of python EXPIRATION_DATE= 2020-09-15 ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 \ shebangfix USE_LDCONFIG= yes DESCR= ${.CURDIR}/../julia/pkg-descr SHEBANG_GLOB= *.sh WRKSRC= ${WRKDIR}/julia-${PORTVERSION} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs GPL_LIBS_DESC= Build with GPL lib: SUITESPARSE GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.3\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${MAKE_CMD} -C ${WRKSRC}/deps extract ${MAKE_CMD} -C ${WRKSRC}/stdlib install post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc .include Index: head/math/ambit/Makefile =================================================================== --- head/math/ambit/Makefile (revision 534184) +++ head/math/ambit/Makefile (revision 534185) @@ -1,29 +1,29 @@ # $FreeBSD$ PORTNAME= ambit DISTVERSIONPREFIX= v DISTVERSION= 0.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math PKGNAMESUFFIX= -tensor # avoid clash with shells/ambit MAINTAINER= yuri@FreeBSD.org COMMENT= C++ library for tensor product calculations LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libopenblas.so:math/openblas \ libsz.so:science/szip USES= cmake compiler:c++11-lang USE_GITHUB= yes GH_ACCOUNT= jturney # some declared cmake options do nothing: see https://github.com/jturney/ambit/issues/25 and the patch CMAKE_ARGS+= -DSHARED_ONLY:BOOL=ON CMAKE_ARGS+= -DENABLE_OPENMP:BOOL=ON CMAKE_ARGS+= -DENABLE_TESTS:BOOL=OFF # https://github.com/jturney/ambit/issues/24 .include Index: head/math/armadillo/Makefile =================================================================== --- head/math/armadillo/Makefile (revision 534184) +++ head/math/armadillo/Makefile (revision 534185) @@ -1,27 +1,27 @@ # $FreeBSD$ PORTNAME= armadillo PORTVERSION= 9.600.4 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MASTER_SITES= SF/arma MAINTAINER= danilo@FreeBSD.org COMMENT= C++ linear algebra library LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libboost_date_time.so:devel/boost-libs \ libopenblas.so:math/openblas \ libarpack.so:math/arpack-ng \ libhdf5.so:science/hdf5 \ libsuperlu.so:math/superlu \ libsz.so:science/szip USES= blaslapack cmake compiler:c++11-lang pkgconfig tar:xz USE_LDCONFIG= yes CMAKE_ARGS+= -DPKG_CONFIG_DIR=${LOCALBASE}/libdata/pkgconfig/ .include Index: head/math/blaze/Makefile =================================================================== --- head/math/blaze/Makefile (revision 534184) +++ head/math/blaze/Makefile (revision 534185) @@ -1,26 +1,26 @@ # $FreeBSD$ PORTNAME= blaze DISTVERSION= 3.5 -PORTREVISION= 6 +PORTREVISION= 8 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/downloads/ MAINTAINER= yuri@FreeBSD.org COMMENT= C++ math library for dense and sparse arithmetic LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ openblas>0:math/openblas RUN_DEPENDS= boost-libs>0:devel/boost-libs \ openblas>0:math/openblas USES= cmake compiler:c++14-lang fortran localbase:ldflags NO_ARCH= yes BB_ACCOUNT= ${PORTNAME}-lib BB_PROJECT= ${PORTNAME} .include Index: head/math/blazeiterative/Makefile =================================================================== --- head/math/blazeiterative/Makefile (revision 534184) +++ head/math/blazeiterative/Makefile (revision 534185) @@ -1,25 +1,25 @@ # $FreeBSD$ PORTNAME= blazeiterative PORTVERSION= g20180409 -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Set of iterative linear system solvers for use with the Blaze library #LICENSE= https://github.com/tjolsen/BlazeIterative/issues/9 BUILD_DEPENDS= blaze>0:math/blaze \ boost-libs>0:devel/boost-libs \ openblas>0:math/openblas RUN_DEPENDS= blaze>0:math/blaze USES= cmake compiler:c++14-lang fortran localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= tjolsen GH_PROJECT= BlazeIterative GH_TAGNAME= e9f24b3 NO_ARCH= yes .include Index: head/math/casadi/Makefile =================================================================== --- head/math/casadi/Makefile (revision 534184) +++ head/math/casadi/Makefile (revision 534185) @@ -1,71 +1,71 @@ # $FreeBSD$ PORTNAME= casadi DISTVERSION= 3.5.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Symbolic framework for numeric optimization LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt USES= cmake compiler:c++11-lang pkgconfig USE_GITHUB= yes USE_LDCONFIG= yes CFLAGS+= -fPIC CXXFLAGS+= -fPIC CMAKE_OFF= WITH_DEEPBIND WITH_BUILD_BLASFEO # cmake-3.16: disable build of examples (they are not installed anyways), # and fail due to not setting up the linker environment properly: CMAKE_OFF+= WITH_EXAMPLES OPTIONS_DEFINE= BLASFEO BONMIN CLANG IPOPT LAPACK QPOASES OPTIONS_DEFAULT= BLASFEO BONMIN IPOPT LAPACK QPOASES OPTIONS_SUB= yes BLASFEO_DESC= Build with BLASFEO BLASFEO_CMAKE_BOOL= WITH_BLASFEO BLASFEO_BUILD_DEPENDS= blasfeo>0:math/blasfeo BONMIN_DESC= Build with Bonmin BONMIN_CMAKE_BOOL= WITH_BONMIN BONMIN_USES= blaslapack:netlib fortran BONMIN_LIB_DEPENDS= libbonmin.so:math/bonmin \ libCbcSolver.so:math/coinmp \ libipopt.so:math/ipopt CLANG_DESC= Build with clang for JIT CLANG_CMAKE_BOOL= WITH_CLANG CLANG_BROKEN= Fails to find clang IPOPT_DESC= Build with IPopt IPOPT_CMAKE_BOOL= WITH_IPOPT IPOPT_USES= blaslapack:netlib fortran IPOPT_LIB_DEPENDS= libipopt.so:math/ipopt LAPACK_DESC= Build with LAPACK LAPACK_CMAKE_BOOL= WITH_LAPACK LAPACK_USES= blaslapack:openblas QPOASES_DESC= Build with qpOASES QPOASES_CMAKE_BOOL= WITH_QPOASES QPOASES_LIB_DEPENDS= libopenblas.so:math/openblas QPOASES_IMPLIES= LAPACK .include .if ${PORT_OPTIONS:MCLANG} # use clang from ports because cmake can't find base llvm for JIT BUILD_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} RUN_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} CPP= clang-cpp${LLVM_DEFAULT} CC= clang${LLVM_DEFAULT} CXX= clang++${LLVM_DEFAULT} .endif .include Index: head/math/coinutils/Makefile =================================================================== --- head/math/coinutils/Makefile (revision 534184) +++ head/math/coinutils/Makefile (revision 534185) @@ -1,31 +1,32 @@ # $FreeBSD$ PORTNAME= CoinUtils DISTVERSION= 2.11.4 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/ PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= Utilities for COIN-OR project LICENSE= EPL LICENSE_FILE= ${WRKSRC}/CoinUtils/LICENSE BUILD_DEPENDS= coin-or-Data-Sample>0:math/coin-or-data-sample \ coin-or-Data-Netlib>0:math/coin-or-data-netlib LIB_DEPENDS= libopenblas.so:math/openblas RUN_DEPENDS:= ${BUILD_DEPENDS} USES= fortran gmake libtool localbase:ldflags pkgconfig zip GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-blas-lib="-lopenblas" --with-lapack-lib="-lopenblas" \ --with-sample-datadir="${LOCALBASE}/share/coin/Data/Sample" \ --with-netlib-datadir="${LOCALBASE}/share/coin/Data/Netlib" # doesn't link with the optional dependency glpk: https://github.com/coin-or/CoinUtils/issues/7 USE_LDCONFIG= yes post-install: @${RM} -r ${STAGEDIR}${PREFIX}/share/coin .include Index: head/math/deal.ii/Makefile =================================================================== --- head/math/deal.ii/Makefile (revision 534184) +++ head/math/deal.ii/Makefile (revision 534185) @@ -1,94 +1,94 @@ # $FreeBSD$ PORTNAME= deal.II DISTVERSIONPREFIX= v DISTVERSION= 9.1.1 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Finite element Differential Equations Analysis Library (DEAL) LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${LOCALBASE}/include/boost/config.hpp:devel/boost-libs LIB_DEPENDS= libhdf5.so:science/hdf5 \ libmetis.so:math/metis \ libtbb.so:devel/tbb USES= blaslapack:gotoblas cmake compiler:c++17-lang localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tl:S/.//} GH_PROJECT= ${PORTNAME:tl:S/.//} USE_LDCONFIG= yes CMAKE_OFF= DEAL_II_ALLOW_BUNDLED DEAL_II_COMPONENT_EXAMPLES \ DEAL_II_WITH_P4EST DEAL_II_WITH_TRILINOS DEAL_II_WITH_UMFPACK \ DEAL_II_WITH_NANOFLANN DEAL_II_WITH_MUPARSER DEAL_II_WITH_ASSIMP \ DEAL_II_WITH_HDF5 OPTIONS_DEFINE= ADOLC ARPACK GSL LAPACK MPI NETCDF OPENCASCADE PETSC SCALAPACK SLEPC SUNDIALS OPTIONS_DEFAULT= GSL LAPACK SUNDIALS ADOLC_DESC= Compile with ADOL-C ADOLC_CMAKE_BOOL= DEAL_II_WITH_ADOLC ADOLC_LIB_DEPENDS= libadolc.so:math/adol-c ADOLC_BROKEN= requires the development version: see https://github.com/dealii/dealii/issues/7293 ARPACK_DESC= Compile with Arpack and PArpack (only with MPI, LAPACK) ARPACK_CMAKE_BOOL= DEAL_II_WITH_ARPACK ARPACK_CMAKE_ON= -DARPACK_LINKER_FLAGS:STRING="${LDFLAGS}" ARPACK_BUILD_DEPENDS= arpack-ng>0:math/arpack-ng ARPACK_RUN_DEPENDS= arpack-ng>0:math/arpack-ng # itself doesn't link to arpack, but makes depending project link to it ARPACK_IMPLIES= LAPACK GSL_DESC= Compile with gsl GSL_CMAKE_BOOL= DEAL_II_WITH_GSL GSL_LIB_DEPENDS= libgsl.so:math/gsl LAPACK_DESC= Compile with LAPACK for matrix operations LAPACK_USES= fortran LAPACK_CMAKE_BOOL= DEAL_II_WITH_LAPACK LAPACK_CMAKE_ON= -DLAPACK_LINKER_FLAGS:STRING="${LDFLAGS}" LAPACK_LIB_DEPENDS= libopenblas.so:math/openblas MPI_DESC= MPI support (math/sundials must be compiled with MPI) MPI_USES= fortran MPI_CMAKE_BOOL= DEAL_II_WITH_MPI MPI_CMAKE_ON= -DMPI_LINKER_FLAGS:STRING="${LDFLAGS}" MPI_LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \ libmpich.so:net/mpich NETCDF_DESC= Compile with Netcdf (only with MPI) NETCDF_CMAKE_BOOL= DEAL_II_WITH_NETCDF NETCDF_CMAKE_ON= -DNETCDF_INCLUDE_DIR:STRING=${LOCALBASE}/include -DNETCDF_CPLUSPLUS_LIBRARY:STRING=${LOCALBASE}/lib/libnetcdf_c++4.so NETCDF_BROKEN= see https://github.com/dealii/dealii/issues/7263 OPENCASCADE_DESC= Compile with OpenCascade OPENCASCADE_CMAKE_BOOL= DEAL_II_WITH_OPENCASCADE OPENCASCADE_CMAKE_ON= -DOPENCASCADE_INCLUDE_DIR:STRING=${LOCALBASE}/include/OpenCASCADE OPENCASCADE_LIB_DEPENDS= libTKernel.so:cad/opencascade PETSC_DESC= Compile with Petsc (only with MPI) PETSC_CMAKE_BOOL= DEAL_II_WITH_PETSC PETSC_LIB_DEPENDS= libpetsc.so:science/PETSc PETSC_BROKEN= see https://github.com/dealii/dealii/issues/7260 SCALAPACK_DESC= Compile with ScaLAPACK (only with MPI) SCALAPACK_CMAKE_BOOL= DEAL_II_WITH_SCALAPACK SCALAPACK_IMPLIES= MPI LAPACK SLEPC_DESC= Compile with SLEPC (only with PETSC) SLEPC_CMAKE_BOOL= DEAL_II_WITH_SLEPC SLEPC_LIB_DEPENDS= libslepc.so:math/slepc SLEPC_IMPLIES= PETSC SUNDIALS_DESC= Compile with SUNDIALS SUNDIALS_CMAKE_BOOL= DEAL_II_WITH_SUNDIALS SUNDIALS_LIB_DEPENDS= libsundials_arkode.so:math/sundials post-stage: @${RM} ${STAGEDIR}${PREFIX}/*.log .include Index: head/math/dune-common/Makefile =================================================================== --- head/math/dune-common/Makefile (revision 534184) +++ head/math/dune-common/Makefile (revision 534185) @@ -1,44 +1,44 @@ # $FreeBSD$ PORTNAME= dune-common DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= DUNE framework: Build system, infrastructure and foundation classes LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= openmpi>0:net/openmpi \ vc>0:devel/vc LIB_DEPENDS= libopenblas.so:math/openblas \ libtbb.so:devel/tbb USES= cmake compiler:c++17-lang fortran pkgconfig python shebangfix SHEBANG_FILES= bin/dune-ctest USE_GITLAB= yes USE_LDCONFIG= yes GL_SITE= https://gitlab.dune-project.org GL_ACCOUNT= core GL_COMMIT= c5321673af09725a411bdd81aa2be5cfaf8bf9a6 CMAKE_ON= BUILD_SHARED_LIBS OPTIONS_DEFINE= DOCS OPTIONS_SUB= yes DOCS_CMAKE_BOOL= FREEBSD_INSTALL_DOCS DOCS_BUILD_DEPENDS= doxygen:devel/doxygen \ latex:print/tex-formats \ sphinx-build:textproc/py-sphinx PORTDOCS= * post-stage-DOCS-on: # https://gitlab.dune-project.org/core/dune-common/issues/191 @${RMDIR} ${STAGEDIR}${DOCSDIR}/comm .include Index: head/math/dune-geometry/Makefile =================================================================== --- head/math/dune-geometry/Makefile (revision 534184) +++ head/math/dune-geometry/Makefile (revision 534185) @@ -1,40 +1,40 @@ # $FreeBSD$ PORTNAME= dune-geometry DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= DUNE framework: Geometry transformations, reference elements, etc LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= openmpi>0:net/openmpi \ vc>0:devel/vc LIB_DEPENDS= libdunecommon.so:math/dune-common \ libopenblas.so:math/openblas \ libtbb.so:devel/tbb USES= cmake compiler:c++17-lang fortran pkgconfig python USE_GITLAB= yes USE_LDCONFIG= yes GL_SITE= https://gitlab.dune-project.org GL_ACCOUNT= core GL_COMMIT= bcf9e469f3c105d5f497dbf81801e8dbd09cde92 CMAKE_ON= BUILD_SHARED_LIBS OPTIONS_DEFINE= DOCS OPTIONS_SUB= yes DOCS_CMAKE_BOOL= FREEBSD_INSTALL_DOCS DOCS_BUILD_DEPENDS= doxygen:devel/doxygen \ sphinx-build:textproc/py-sphinx PORTDOCS= * .include Index: head/math/dune-grid/Makefile =================================================================== --- head/math/dune-grid/Makefile (revision 534184) +++ head/math/dune-grid/Makefile (revision 534185) @@ -1,42 +1,42 @@ # $FreeBSD$ PORTNAME= dune-grid DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= DUNE framework: Geometry transformations, reference elements, etc LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= openmpi>0:net/openmpi \ vc>0:devel/vc LIB_DEPENDS= libdunecommon.so:math/dune-common \ libdunegeometry.so:math/dune-geometry \ libugL.so:math/dune-uggrid \ libopenblas.so:math/openblas \ libtbb.so:devel/tbb USES= cmake compiler:c++17-lang fortran pkgconfig python:build USE_GITLAB= yes USE_LDCONFIG= yes GL_SITE= https://gitlab.dune-project.org GL_ACCOUNT= core GL_COMMIT= 8a201c5f04f94b0a25c9879fb9fb97f2eb5f0840 CMAKE_ON= BUILD_SHARED_LIBS OPTIONS_DEFINE= DOCS OPTIONS_SUB= yes DOCS_CMAKE_BOOL= FREEBSD_INSTALL_DOCS DOCS_BUILD_DEPENDS= doxygen:devel/doxygen \ sphinx-build:textproc/py-sphinx PORTDOCS= * .include Index: head/math/dune-pdelab/Makefile =================================================================== --- head/math/dune-pdelab/Makefile (revision 534184) +++ head/math/dune-pdelab/Makefile (revision 534185) @@ -1,51 +1,51 @@ # $FreeBSD$ PORTNAME= dune-pdelab DISTVERSIONPREFIX= v DISTVERSION= 2.6.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= DUNE framework: PDE solver toolbox LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING DUNE_DEPENDS= dune-common>0:math/dune-common \ dune-functions>0:math/dune-functions \ dune-grid>0:math/dune-grid \ dune-istl>0:math/dune-istl \ dune-geometry>0:math/dune-geometry \ dune-localfunctions>0:math/dune-localfunctions \ dune-typetree>0:math/dune-typetree BUILD_DEPENDS= ${DUNE_DEPENDS} LIB_DEPENDS= libugL.so:math/dune-uggrid \ libgmp.so:math/gmp \ libmetis.so:math/metis \ libopenblas.so:math/openblas \ libsuitesparseconfig.so:math/suitesparse \ libsuperlu.so:math/superlu \ libtbb.so:devel/tbb RUN_DEPENDS= ${DUNE_DEPENDS} USES= cmake compiler:c++17-lang fortran pkgconfig USE_GITLAB= yes USE_LDCONFIG= yes GL_SITE= https://gitlab.dune-project.org GL_ACCOUNT= pdelab GL_COMMIT= 52b45c1640bf42a1f7f4180f578158999a7178d2 CMAKE_ON= BUILD_SHARED_LIBS OPTIONS_DEFINE= DOCS OPTIONS_SUB= yes DOCS_CMAKE_BOOL= FREEBSD_INSTALL_DOCS DOCS_BUILD_DEPENDS= doxygen:devel/doxygen \ sphinx-build:textproc/py-sphinx PORTDOCS= * .include Index: head/math/dune-uggrid/Makefile =================================================================== --- head/math/dune-uggrid/Makefile (revision 534184) +++ head/math/dune-uggrid/Makefile (revision 534185) @@ -1,32 +1,32 @@ # $FreeBSD$ PORTNAME= dune-uggrid DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= DUNE framework: The UG Grid Manager LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING.LGPL-2.1 BUILD_DEPENDS= openmpi>0:net/openmpi \ vc>0:devel/vc LIB_DEPENDS= libdunecommon.so:math/dune-common \ libopenblas.so:math/openblas \ libtbb.so:devel/tbb RUN_DEPENDS= openmpi>0:net/openmpi USES= cmake compiler:c++17-lang fortran pkgconfig python USE_GITLAB= yes USE_LDCONFIG= yes GL_SITE= https://gitlab.dune-project.org GL_ACCOUNT= staging GL_COMMIT= 1fce83c6efe2e0f77d0ee1b3cf6335172f1ace37 CMAKE_ON= BUILD_SHARED_LIBS .include Index: head/math/elemental/Makefile =================================================================== --- head/math/elemental/Makefile (revision 534184) +++ head/math/elemental/Makefile (revision 534185) @@ -1,42 +1,43 @@ # $FreeBSD$ PORTNAME= elemental DISTVERSIONPREFIX= v DISTVERSION= 0.87.7 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Dense and sparse linear algebra, conic optimization, lattice reduction LICENSE= BSD2CLAUSE LIB_DEPENDS= libgmp.so:math/gmp \ libmetis.so:math/metis \ libmpc.so:math/mpc \ libmpfr.so:math/mpfr \ libmpi_cxx.so:net/openmpi \ libopenblas.so:math/openblas \ libqd.so:math/qd USES= cmake compiler:c++11-lang fortran USE_GITHUB= yes GH_PROJECT= Elemental USE_LDCONFIG= yes CMAKE_ON= EL_DISABLE_PARMETIS CMAKE_ARGS= -DGFORTRAN_LIB:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgfortran.so \ -DFREEBSD_GCC_LIB:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so DOCSDIR= ${PREFIX}/share/doc/Elemental OPTIONS_DEFINE= DOCS PORTDOCS= * post-install: @cd ${STAGEDIR}${PREFIX} && \ ${MV} CMake lib/cmake && \ ${RM} -r ${STAGEDIR}${PREFIX}/python && \ ${RM} -r ${STAGEDIR}${PREFIX}/conf .include Index: head/math/elpa/Makefile =================================================================== --- head/math/elpa/Makefile (revision 534184) +++ head/math/elpa/Makefile (revision 534185) @@ -1,51 +1,51 @@ # $FreeBSD$ PORTNAME= elpa DISTVERSION= 2019.05.002 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= http://elpa.mpcdf.mpg.de/html/Releases/${DISTVERSION}/ MAINTAINER= yuri@FreeBSD.org COMMENT= Eigenvalue soLver for Petaflop Applications LICENSE= GPLv3 LGPL3 LICENSE_COMB= dual LICENSE_FILE_GPLv3= ${WRKSRC}/COPYING/gpl.txt LICENSE_FILE_LGPL3= ${WRKSRC}/COPYING/lgpl.txt LIB_DEPENDS= libopenblas.so:math/openblas USES= compiler:c11 fortran gmake libtool localbase perl5 shebangfix SHEBANG_GLOB= *.pl GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-avx --disable-avx2 --disable-static USE_LDCONFIG= yes INSTALL_TARGET= install-strip BINARY_ALIAS= make=gmake gcc=gcc${GCC_DEFAULT} g++=g++${GCC_DEFAULT} # build fails with clang: recursively calls cc FCFLAGS+= -I${LOCALBASE}/include OPTIONS_DEFINE= OPENMP MPI DOCS OPTIONS_DEFINE_amd64= SSE OPTIONS_DEFAULT_amd64= SSE SSE_CFLAGS= -msse3 OPENMP_CONFIGURE_ENABLE= openmp MPI_CONFIGURE_WITH= mpi MPI_LIB_DEPENDS= libmpich.so:net/mpich \ libscalapack.so:math/scalapack PORTDOCS= * .include .if ${PORT_OPTIONS:NSSE} CONFIGURE_ARGS+= --disable-sse --disable-sse-assembly .endif post-install-DOCS-on: @cd ${STAGEDIR}${DOCSDIR} && ${RM} *gpl* COPYING LICENSE .include Index: head/math/g2o/Makefile =================================================================== --- head/math/g2o/Makefile (revision 534184) +++ head/math/g2o/Makefile (revision 534185) @@ -1,61 +1,62 @@ # $FreeBSD$ PORTNAME= g2o DISTVERSION= 20200410_git +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= General framework for graph optimization LICENSE= LGPL3 GPLv3 LICENSE_COMB= dual LIB_DEPENDS= libcxsparse.so:math/suitesparse \ libQGLViewer-qt5.so:graphics/libQGLViewer \ libmetis.so:math/metis \ libopenblas.so:math/openblas USES= cmake compiler:c++11-lang gl eigen:3 blaslapack:netlib qt:5 USE_GITHUB= yes GH_ACCOUNT= RainerKuemmerle USE_GL= gl glu USE_QT= core gui opengl xml widgets buildtools_build qmake_build USE_LDCONFIG= yes CMAKE_OFF= DO_SSE_AUTODETECT OPTIONS_DEFINE= FAST_MATH OPTIONS_SINGLE= SIMD_${ARCH:tu} OPTIONS_SINGLE_SIMD_AMD64= NOSSE SSE2 SSE3 SSE41 SSE42 SSE4A OPTIONS_SINGLE_SIMD_I386= ${OPTIONS_SINGLE_SIMD_AMD64} OPTIONS_DEFAULT_amd64= SSE2 OPTIONS_DEFAULT_i386= SSE2 SIMD_AMD64_DESC= Use SSE SIMD optimizations SIMD_I386_DESC= ${SIMD_AMD64_DESC} FAST_MATH_DESC= Enable fast math operations NOSSE_DESC= Do not use SIMD optimization SSE2_DESC= SSE2 optimization SSE3_DESC= SSE3 optimization SSE41_DESC= SSE41 optimization SSE42_DESC= SSE42 optimization SSE4A_DESC= SSE4a optimization FAST_MATH_CMAKE_BOOL= G2O_FAST_MATH NOSSE_CMAKE_ON= -DDISABLE_SSE2:BOOL=ON -DDISABLE_SSE3:BOOL=ON -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE2_CMAKE_ON= -DDISABLE_SSE3:BOOL=ON -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE3_CMAKE_ON= -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE41_CMAKE_ON= -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE42_CMAKE_ON= -DDISABLE_SSE4_A:BOOL=ON .include .if ${ARCH} != amd64 && ${ARCH} != i386 CMAKE_ARGS+= -DDISABLE_SSE2:BOOL=ON -DDISABLE_SSE3:BOOL=ON -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON .endif post-patch: @${REINPLACE_CMD} -e 's|/usr/include|${LOCALBASE}/include|' \ ${WRKSRC}/cmake_modules/*.cmake .include Index: head/math/hmat-oss/Makefile =================================================================== --- head/math/hmat-oss/Makefile (revision 534184) +++ head/math/hmat-oss/Makefile (revision 534185) @@ -1,36 +1,37 @@ # $FreeBSD$ PORTNAME= hmat-oss DISTVERSION= 1.6.1 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Hierarchical matrix C/C++ library LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.md LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake compiler:openmp USE_GITHUB= yes GH_ACCOUNT= jeromerobert USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so \ -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so .include .if ${CHOSEN_COMPILER_TYPE} == gcc USE_GCC= yes .endif do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DBUILD_EXAMPLES:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${REINPLACE_CMD} "s|#define OPENBLAS_DISABLE_THREADS|\/\/&|" ${BUILD_WRKSRC}/config.h && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include Index: head/math/moab/Makefile =================================================================== --- head/math/moab/Makefile (revision 534184) +++ head/math/moab/Makefile (revision 534185) @@ -1,38 +1,38 @@ # $FreeBSD$ PORTNAME= moab DISTVERSION= 5.1.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/ MAINTAINER= yuri@FreeBSD.org COMMENT= Component for representing and evaluating mesh data LICENSE= LGPL3+ LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf \ libopenblas.so:math/openblas USES= cmake:noninja compiler:c++11-lang eigen:3 fortran USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so \ -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so BB_ACCOUNT= fathomteam BB_PROJECT= ${PORTNAME} BB_COMMIT= 7bde9dfb84a8 WRKSRC= ${WRKDIR}/${BB_ACCOUNT}-${BB_PROJECT}-${BB_COMMIT} OPTIONS_DEFINE= MPI OPTIONS_DEFAULT= MPI OPTIONS_SUB= yes MPI_CMAKE_BOOL= ENABLE_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi .include Index: head/math/octave-forge-ltfat/Makefile =================================================================== --- head/math/octave-forge-ltfat/Makefile (revision 534184) +++ head/math/octave-forge-ltfat/Makefile (revision 534185) @@ -1,37 +1,37 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= octave-forge-ltfat PORTVERSION= 2.3.1 -PORTREVISION= 7 +PORTREVISION= 8 PORTEPOCH= 1 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org COMMENT= Octave-forge package ${OCTAVE_PKGNAME} LICENSE= GPLv3 LICENSE_FILE= ${WRKDIR}/${OCTSRC}/COPYING LIB_DEPENDS= libfftw3.so:math/fftw3 \ libportaudio.so:audio/portaudio \ libopenblas.so:math/openblas # OCTSRC is the name of the directory of the package. # It is usually ${OCTAVE_PKGNAME} or ${DISTNAME}. OCTSRC= ${OCTAVE_PKGNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src GNU_CONFIGURE= yes .include "${.CURDIR}/../../Mk/bsd.octave.mk" post-build: ${RM} ${WRKSRC}/Makefile ${WRKSRC}/configure ${RM} ${WRKSRC}/../inst/DESCRIPTION ${RM} ${WRKSRC}/../inst/ltfat/DESCRIPTION ${RM} ${WRKSRC}/../inst/ltfat/inst/DESCRIPTION cd ${WRKDIR} && ${TAR} cfz ${DISTNAME}.tar.gz ${OCTSRC} .include Index: head/math/osi/Makefile =================================================================== --- head/math/osi/Makefile (revision 534184) +++ head/math/osi/Makefile (revision 534185) @@ -1,33 +1,34 @@ # $FreeBSD$ PORTNAME= Osi DISTVERSION= 0.108.6 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/ PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= COIN-OR Open Solver Interface, an API for calling solver libraries LICENSE= EPL LICENSE_FILE= ${WRKSRC}/Osi/LICENSE BUILD_DEPENDS= ${RUN_DEPENDS} LIB_DEPENDS= libCoinUtils.so:math/coinutils \ libopenblas.so:math/openblas RUN_DEPENDS= coin-or-Data-Sample>0:math/coin-or-data-sample \ coin-or-Data-Netlib>0:math/coin-or-data-netlib USES= fortran gmake libtool localbase:ldflags pkgconfig tar:tgz GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-blas-lib="-lopenblas" --with-lapack-lib="-lopenblas" \ --with-sample-datadir="${LOCALBASE}/share/coin/Data/Sample" \ --with-netlib-datadir="${LOCALBASE}/share/coin/Data/Netlib" \ --with-coinutils-incdir="${LOCALBASE}/include/coin" --with-coinutils-lib="${LOCALBASE}/lib/libCoinUtils.so" # Incompatible with optional dependencies glpk and SoPlex: https://projects.coin-or.org/Osi/ticket/117 https://projects.coin-or.org/Osi/ticket/118 USE_LDCONFIG= yes post-install: @${RM} -r ${STAGEDIR}${PREFIX}/share/coin .include Index: head/math/py-pysparse/Makefile =================================================================== --- head/math/py-pysparse/Makefile (revision 534184) +++ head/math/py-pysparse/Makefile (revision 534185) @@ -1,32 +1,32 @@ # Created by: Yuri Victorovich # $FreeBSD$ PORTNAME= pysparse PORTVERSION= 1.3 -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast sparse matrix library for Python LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE DEPRECATED= Uses deprecated version of python EXPIRATION_DATE= 2020-08-15 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.2,1:math/py-numpy@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.2,1:math/py-numpy@${PY_FLAVOR} LIB_DEPENDS= libopenblas.so:math/openblas USE_GITHUB= yes GH_ACCOUNT= PythonOptimizers GH_TAGNAME= f8430bd LDFLAGS+= -shared # Workaround for an obscure bug in py-numpy, see https://github.com/numpy/numpy/issues/7779 USES= fortran python:2.7 # fortran is needed for the correct build flags passed to py-numpy extension build process USE_PYTHON= distutils autoplist .include Index: head/math/qposases/Makefile =================================================================== --- head/math/qposases/Makefile (revision 534184) +++ head/math/qposases/Makefile (revision 534185) @@ -1,40 +1,40 @@ # $FreeBSD$ PORTNAME= qpOASES DISTVERSION= 3.2.1 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/ PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= Library for online active set strategy quadratic programming problems LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake fortran tar:tgz USE_LDCONFIG= yes CMAKE_ON= BUILD_SHARED_LIBS CMAKE_OFF= QPOASES_BUILD_EXAMPLES LDFLAGS+= ${LOCALBASE}/lib/libopenblas.so EXAMPLES= example1 example1a example1b example2 example4 example5 exampleLP qrecipe # there are some other examples, but they need additional files/packages to run post-patch: @truncate -s 0 ${WRKSRC}/src/BLASReplacement.cpp ${WRKSRC}/src/LAPACKReplacement.cpp do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DQPOASES_BUILD_EXAMPLES:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ for e in ${EXAMPLES}; do \ ${ECHO} "=== Running example $${e} ===" && \ ${BUILD_WRKSRC}/bin/$${e}; \ done .include Index: head/misc/libpostal/Makefile =================================================================== --- head/misc/libpostal/Makefile (revision 534184) +++ head/misc/libpostal/Makefile (revision 534185) @@ -1,69 +1,69 @@ # $FreeBSD$ PORTNAME= libpostal DISTVERSIONPREFIX= v DISTVERSION= 1.1 DISTVERSIONSUFFIX= -alpha -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= misc geography PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/ PATCHFILES= 21601eb4b8941b8d6d9b795b1d6db4bd376f5b28.patch:-p1 MAINTAINER= dmgk@FreeBSD.org COMMENT= Library for parsing/normalizing street addresses around the world LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_mips= fails to compile: tagger.h:5: redefinition of typedef 'tagger_feature_function' BROKEN_mips64= fails to compile: tagger.h:5: redefinition of typedef 'tagger_feature_function' RUN_DEPENDS= curl:ftp/curl USES= autoreconf libtool localbase USE_GITHUB= yes GH_ACCOUNT= openvenues USE_LDCONFIG= yes GNU_CONFIGURE= yes CONFIGURE_ARGS= --datadir=${LIBPOSTAL_DATADIR} \ --disable-data-download \ --disable-static TEST_TARGET= check SUB_FILES= pkg-message SUB_LIST= PORTNAME=${PORTNAME} \ LIBPOSTAL_DATADIR=${LIBPOSTAL_DATADIR} PORTDOCS= README.md OPTIONS_DEFINE= CBLAS DOCS SSE2 OPTIONS_SUB= yes CBLAS_DESC= Build with CBLAS/OPENBLAS SSE2_DESC= Enable SSE2 optimization CBLAS_LIB_DEPENDS= libopenblas.so:math/openblas CBLAS_CONFIGURE_WITH= cblas=${LOCALBASE}/lib/libopenblas.so SSE2_CONFIGURE_ENABLE= sse2 LIBPOSTAL_DATADIR?= /var/db/${PORTNAME} pre-configure: @cd ${WRKSRC} && ${SH} bootstrap.sh post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpostal.so ${INSTALL_SCRIPT} ${WRKSRC}/src/address_parser ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${WRKSRC}/src/libpostal ${STAGEDIR}${PREFIX}/bin post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} .include Index: head/misc/mxnet/Makefile =================================================================== --- head/misc/mxnet/Makefile (revision 534184) +++ head/misc/mxnet/Makefile (revision 534185) @@ -1,65 +1,65 @@ # $FreeBSD$ PORTNAME= mxnet DISTVERSION= 1.6.0 DISTVERSIONSUFFIX= .rc0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= misc # machine-learning PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ PATCHFILES+= cbd43cab6eef8362bcb1cc91e59b49045c90444c.patch:-p1 \ 89c180d47b407913f0a9948d6e7f55daa523e7aa.patch:-p1 MAINTAINER= yuri@FreeBSD.org COMMENT= Apache MXNet: Ultra-scalable deep learning framework LICENSE= APACHE20 BUILD_DEPENDS= googletest>0:devel/googletest \ ${LOCALBASE}/include/dnnl.h:math/onednn LIB_DEPENDS= libdmlc.so:devel/dmlc-core \ liblapack.so:math/lapack \ libopenblas.so:math/openblas USES= cmake compiler:c++11-lang localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= apache GH_PROJECT= incubator-mxnet GH_TUPLE= apache:incubator-tvm:5d66e7a:tvm/3rdparty/tvm \ dmlc:dlpack:b90e939:dlpack/3rdparty/dlpack USE_LDCONFIG= yes CMAKE_OFF= USE_CUDA USE_CUDNN USE_MKLDNN USE_NCCL ENABLE_CUDA_RTC \ BUILD_CPP_EXAMPLES USE_JEMALLOC USE_MKL_IF_AVAILABLE LDFLAGS+= -pthread -lexecinfo OPTIONS_DEFINE= CPP OPENCV OPTIONS_DEFAULT= CPP OPENCV OPTIONS_SUB= yes CPP_DESC= Install the C++ binding (cpp-package) CPP_CMAKE_BOOL= USE_CPP_PACKAGE CPP_USES= python:build CPP_VARS= BINARY_ALIAS=python=${PYTHON_CMD} OPENCV_CMAKE_BOOL= USE_OPENCV OPENCV_LIB_DEPENDS= libopencv_core.so:graphics/opencv-core \ libopencv_videoio.so:graphics/opencv .include .if ${ARCH} != amd64 && ${ARCH} != i386 CMAKE_OFF+= USE_SSE .endif post-patch: .for lib in mkldnn.h mkldnn_types.h @${RM} ${WRKSRC}/include/mkldnn/${lib} @${LN} -s ${LOCALBASE}/include/dnnl.h ${WRKSRC}/include/mkldnn/${lib} .endfor post-install-CPP-on: # https://github.com/apache/incubator-mxnet/issues/17080 @cd ${STAGEDIR}${PREFIX} && ${RM} include/mxnet-cpp/.gitignore include/mxnet-cpp/CPPLINT.cfg .include Index: head/misc/visp/Makefile =================================================================== --- head/misc/visp/Makefile (revision 534184) +++ head/misc/visp/Makefile (revision 534185) @@ -1,42 +1,43 @@ # $FreeBSD$ PORTNAME= visp DISTVERSION= 3.3.0 +PORTREVISION= 1 CATEGORIES= misc MASTER_SITES= http://gforge.inria.fr/frs/download.php/latestfile/475/ MAINTAINER= yuri@FreeBSD.org COMMENT= Modular library for visual tracking and visual servoing LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libblas.so:math/blas \ libboost_system.so:devel/boost-libs \ libdmtx.so:graphics/libdmtx \ libflann.so:math/flann \ libgsl.so:math/gsl \ liblapack.so:math/lapack \ libopenblas.so:math/openblas \ libopencv_core.so:graphics/opencv-core \ libopencv_videoio.so:graphics/opencv \ libpcl_common.so:graphics/pcl-pointclouds \ libqhull.so:math/qhull5 \ libpng.so:graphics/png \ libv4l2.so:multimedia/libv4l USES= cmake compiler:c++14-lang eigen:3 fortran gnome jpeg xorg USE_GNOME= libxml2 USE_XORG= ice sm x11 xext USE_LDCONFIG= yes CMAKE_OFF= WITH_QBDEVICE BUILD_EXAMPLES BUILD_TUTORIALS BUILD_TESTS BUILD_DEMOS OPTIONS_DEFINE= OGRE OGRE_DESC= Include Ogre support OGRE_CMAKE_BOOL= USE_OGRE OGRE_LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libOgreMain.so:graphics/ogre3d19 .include Index: head/science/code_saturne/Makefile =================================================================== --- head/science/code_saturne/Makefile (revision 534184) +++ head/science/code_saturne/Makefile (revision 534185) @@ -1,109 +1,110 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= code_saturne PORTVERSION= 6.1.0 +PORTREVISION= 1 DISTVERSIONPREFIX= v CATEGORIES= science parallel MAINTAINER= thierry@FreeBSD.org COMMENT= EDF's general purpose Computational Fluid Dynamics (CFD) software LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= gsed:textproc/gsed LIB_DEPENDS= libsysinfo.so:devel/libsysinfo \ libcgns.so:science/cgnslib \ libhdf5.so:science/hdf5 \ libmedC.so:french/med RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ xmgrace:math/grace \ bash:shells/bash \ xterm:x11/xterm USE_GITHUB= yes GH_ACCOUNT= code-saturne GH_TAGNAME= 89e7bbf # Some fixes are needed for atmospheric aerosols USES= autoreconf bison fortran gettext gnome gmake iconv libtool \ pyqt:5 python:3.6+ shebangfix USE_GNOME= libxml2 USE_PYQT= core gui sip widgets xml_build SHEBANG_FILES= install_saturne.py tests/unittests.py bin/*.py build-aux/*.py CPPFLAGS+= -I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2 GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-salome --without-salome-yacs --without-salome-kernel \ --without-salome-gui CONFIGURE_ENV= ac_cv_path_SED=${LOCALBASE}/bin/gsed USE_LDCONFIG= yes BINARY_ALIAS= python=${PYTHON_CMD} \ pyrcc5=pyrcc5-${PYTHON_VER} \ pyuic5=pyuic5-${PYTHON_VER} OPTIONS_DEFINE= DOCS EXAMPLES BATCH BLAS MPI OPTIONS_DEFAULT= BATCH BLAS MPI METIS OPTIONS_RADIO= METIS OPTIONS_RADIO_METIS= METIS PARMETIS BLAS_DESC= Support of OpenBLAS BLAS_USES= blaslapack BLAS_CONFIGURE_ON= --with-blas=yes --with-blas-lib=${LOCALBASE}/lib --with-blas-libs=-lopenblas BLAS_LIB_DEPENDS= libopenblas.so:math/openblas BATCH_DESC= Use Torque to submit batches BATCH_RUN_DEPENDS= pbs-config:sysutils/torque MPI_LIB_DEPENDS= libmpi.so:net/mpich MPI_CONFIGURE_WITH= mpi METIS_DESC= Support of METIS METIS_LIB_DEPENDS= libmetis.so:math/metis METIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include" PARMETIS_DESC= Support of ParMETIS PARMETIS_LIB_DEPENDS= libparmetis.so:math/parmetis PARMETIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include/parmetis" \ --with-metis-lib="${LOCALBASE}/lib/parmetis" PARMETIS_CONFIGURE_ENV= LIBS=-lexecinfo TEST_TARGET= check .if defined(PACKAGE_BUILDING) TERM= vt100 # Force for pointyhat to override su .else TERM?= vt100 # Default value needed for tput in jail or tinderbox .endif .include .if ${ARCH} == "i386" # /wrkdirs/usr/ports/science/code_saturne/work/code_saturne-5.3.0/src/apps/.libs # /libsaturne.so: # undefined reference to `__atomic_compare_exchange' CONFIGURE_ARGS+= --disable-openmp .endif .if ${PORT_OPTIONS:MDOCS} USE_TEX= tex:build BUILD_DEPENDS+= fig2dev:print/transfig \ doxygen:devel/doxygen \ dot:graphics/graphviz \ sphinx-build-${PYTHON_VER}:textproc/py-sphinx@${PY_FLAVOR} BINARY_ALIAS+= sphinx-build=sphinx-build-${PYTHON_VER} ALL_TARGET= all pdf DOCS= AUTHORS ChangeLog README .endif pre-configure: ${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l ${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h \ -o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y ${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|' \ ${WRKSRC}/Makefile.am post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCS:C|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR} .include Index: head/science/dalton/Makefile =================================================================== --- head/science/dalton/Makefile (revision 534184) +++ head/science/dalton/Makefile (revision 534185) @@ -1,38 +1,38 @@ # $FreeBSD$ PORTNAME= dalton DISTVERSION= 2018.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Powerful molecular electronic structure program for quantum chemistry LICENSE= LGPL21 LIB_DEPENDS= liblapack.so:math/lapack \ libopenblas.so:math/openblas RUN_DEPENDS= bash:shells/bash USES= cmake:noninja fortran python:build shebangfix SHEBANG_FILES= dalton.in USE_GITLAB= yes GL_COMMIT= 4aa945ecd235fbf67ed0c1609617c553ef40be89 USE_GITHUB= nodefault GL_TUPLE= bingao:gen1int:1e4148ecd676761b3399801acba443925a1fee6b:gen1int/external/gen1int \ dalton:efs:ffc1a2f137fa6e322143bf84be724d9b815e637b:efs/external/efs \ pe-software:pelib-public:ba0ba35e9d8f5663f320fb3de6010fb66106ed80:pelib/external/pelib GH_TUPLE= cstein:qfitlib:fdf3f38:qfitlib/external/qfitlib \ dftlibs:xcfun:177fcd96:xcfun/external/xcfun \ dftlibs:xcint:2d1496f5:xcint/external/xcint BINARY_ALIAS= python=${PYTHON_CMD} post-install: @${MV} ${STAGEDIR}${PREFIX}/${PORTNAME} ${STAGEDIR}${DATADIR} @${REINPLACE_CMD} -i '' 's|%%SCRIPT_DIR%%|${DATADIR}|; s|%%PREFIX%%|${PREFIX}|' ${STAGEDIR}${DATADIR}/${PORTNAME} @${MV} ${STAGEDIR}${DATADIR}/${PORTNAME}* ${STAGEDIR}${PREFIX}/bin/ @cd ${STAGEDIR}${DATADIR} && ${RM} -r tools/CMakeFiles tools/Makefile tools/cmake_install.cmake .include Index: head/science/elmerfem/Makefile =================================================================== --- head/science/elmerfem/Makefile (revision 534184) +++ head/science/elmerfem/Makefile (revision 534185) @@ -1,84 +1,85 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= elmerfem PORTVERSION= 8.4.20200309 +PORTREVISION= 1 DISTVERSIONPREFIX= release- CATEGORIES= science MAINTAINER= henrik@gulbra.net COMMENT= Multiphysical simulation software LICENSE= GPLv2 LIB_DEPENDS= libmetis.so:math/metis \ libmpich.so:net/mpich \ libopenblas.so:math/openblas \ libparpack.so:math/arpack-ng USES= cmake compiler:c++11-lang fortran tcl USE_GITHUB= yes GH_ACCOUNT= ElmerCSC GH_TAGNAME= 39f692c USE_LDCONFIG= ${PREFIX}/lib/elmersolver ALL_TARGET= # empty CMAKE_ARGS= -DELMER_FEM_REVISION:STRING=${GH_TAGNAME} LDFLAGS+= -L${LOCALBASE}/lib FCPPFLAGS+= -ansi CMAKE_ARGS+= -DHAVE_INTTYPES_H=ON .if !defined(MAINTAINER_MODE) CMAKE_ARGS+= -Wno-dev .endif OPTIONS_DEFINE= GUI OPTIONS_DEFAULT= GUI OPTIONS_SUB= yes GUI_LIB_DEPENDS= libexpat.so:textproc/expat2 \ libfreetype.so:print/freetype2 \ libpng16.so:graphics/png \ libpython2.7.so:lang/python27 \ libqwt6.so:x11-toolkits/qwt6 \ libtiff.so:graphics/tiff \ libvtksys-6.2.so:math/vtk6 GUI_USES= gl jpeg qt:5 xorg GUI_USE= gl=gl,glu xorg=ice,sm,x11,xext,xt \ qt=buildtools_build,concurrent,core,declarative,gui,location,network,opengl,printsupport,qmake_build,script,sensors,sql,svg,webchannel,webkit,widgets,xml GUI_CMAKE_BOOL= WITH_ELMERGUI WITH_PARAVIEW WITH_QT5 QT_FOUND # WITH_OCC requires the QVTKWidget.h that is only provided by the math/vtk6 with QT5=yes GUI_CMAKE_ON= -DQWT_LIBRARY=${QT_LIBDIR}/libqwt6.so \ -DQWT_INCLUDE_DIR=${QT_INCDIR}/qwt6 \ -DDESIRED_QT_VERSION=5 .include .if ${ARCH} == "amd64" CFLAGS_${ARCH}= -fPIC CXXFLAGS_${ARCH}= -fPIC FCFLAGS+= -fPIC FFLAGS+= -fPIC .endif post-patch: @${RM} -r ${WRKSRC}/elmergrid/src/metis-5.1.0 @${REINPLACE_CMD} -e 's,"metis.*/metis\.h",,' \ ${WRKSRC}/elmergrid/src/femelmer.c post-patch-GUI-on: #@${REINPLACE_CMD} -e "s|\$${VERSION}|`${PKG_QUERY} '%v' opencascade`|" \ # "${WRKSRC}/cmake/Modules/FindOCE.cmake" #@${REINPLACE_CMD} -e 's|$${INCLUDE}|${LOCALBASE}/include/OpenCASCADE|' \ # "${WRKSRC}/cmake/Modules/FindOCE.cmake" post-install: ${LN} -sf ElmerSolver_mpi ${STAGEDIR}${PREFIX}/bin/ElmerSolver @${STRIP_CMD} ${STAGEDIR}/${PREFIX}/bin/ElmerGrid do-test: @cd ${TEST_WRKSRC} && ctest -C ${CMAKE_BUILD_TYPE} ${_MAKE_JOBS} .include Index: head/science/erkale/Makefile =================================================================== --- head/science/erkale/Makefile (revision 534184) +++ head/science/erkale/Makefile (revision 534185) @@ -1,69 +1,70 @@ # $FreeBSD$ PORTNAME= erkale DISTVERSION= g20200426 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Quantum chemistry program to solve the electronic structure of atoms LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_i386= liberkale_omp.so.0.1.0: undefined reference to `__atomic_compare_exchange' BUILD_DEPENDS= armadillo>0:math/armadillo LIB_DEPENDS= libderiv.so:science/libint \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libint.so:science/libint \ libsz.so:science/szip \ libxc.so:science/libxc RUN_DEPENDS= ${LOCALBASE}/share/erkale/basis/6-21G.gbs:science/erkale-pseudopotentials FLAVORS= serial parallel FLAVOR?= ${FLAVORS:[1]} serial_PKGNAMESUFFIX= -serial USES= cmake:noninja compiler:c11 fortran pkgconfig USE_GITHUB= yes GH_ACCOUNT= susilehtola GH_TAGNAME= 870e772f09631b3dbdd99a18e4f3d4786d684a01 USE_LDCONFIG= yes TEST_TARGET= test CMAKE_ON= BUILD_SHARED_LIBS CMAKE_ARGS= -DERKALE_SYSTEM_LIBRARY=${DATADIR}/basis PLIST_SUB= SUFFIX="${SUFFIX}" .if ${FLAVOR} == serial CMAKE_OFF= USE_OPENMP .else # parallel CMAKE_ON+= USE_OPENMP SUFFIX= _omp .endif OPTIONS_SINGLE= LINALG OPTIONS_SINGLE_LINALG= NETLIB OPENBLAS OPTIONS_DEFAULT= OPENBLAS LINALG_DESC= Linear algebra library NETLIB_USES= blaslapack:netlib NETLIB_CMAKE_ON= -DLAPACK_LIBRARIES:STRING=-llapack -DBLAS_LIBRARIES:STRING=-lblas NETLIB_LDFLAGS= ${LOCALBASE}/lib/libcblas.so ${LOCALBASE}/lib/liblapack.so ${LOCALBASE}/lib/libblas.so NETLIB_LIB_DEPENDS= libcblas.so:math/cblas NETLIB_BROKEN= choosing NETLIB causes a conflict: openblas-0.3.7_3,1 conflicts with cblas-1.0_12 on /usr/local/include/cblas.h OPENBLAS_USES= blaslapack:openblas OPENBLAS_CMAKE_ON= -DLAPACK_LIBRARIES:STRING=-lopenblas -DBLAS_LIBRARIES:STRING=-lopenblas OPENBLAS_LIB_DEPENDS= libopenblas.so:math/openblas .if ${FLAVOR} == parallel post-install: @${MV} ${STAGEDIR}${PREFIX}/include/erkale ${STAGEDIR}${PREFIX}/include/erkale${SUFFIX} @${MV} ${STAGEDIR}${PREFIX}/bin/erkale_bastool ${STAGEDIR}${PREFIX}/bin/erkale_bastool${SUFFIX} .endif .include Index: head/science/fleur/Makefile =================================================================== --- head/science/fleur/Makefile (revision 534184) +++ head/science/fleur/Makefile (revision 534185) @@ -1,65 +1,65 @@ # $FreeBSD$ PORTNAME= fleur DISTVERSION= 0.27-3 # Release 3 of Version 0.27 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= science MASTER_SITES= http://www.flapw.de/pm/uploads/FLEUR/ DISTNAME= fleurMaXR${DISTVERSION:C/.*-//} MAINTAINER= yuri@FreeBSD.org COMMENT= FLAPW code for atomic computations in quantum chemistry and physics LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN= Fails to build with cmake-3.16.0 LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake:noninja fortran gnome localbase:ldflags tar:tgz USE_GNOME= libxml2 FFLAGS= -I${LOCALBASE}/include WRKSRC= ${WRKDIR}/${PORTNAME} OPTIONS_DEFINE= HDF5 MPI SCALAPACK ELPA WANNIER OPTIONS_DEFAULT= MPI SCALAPACK ELPA WANNIER HDF5_CONFIGURE_ENV= FLEUR_USE_HDF5=1 HDF5_ROOT=${LOCALBASE}/lib HDF5_CONFIGURE_ENV_OFF= FLEUR_USE_HDF5=0 HDF5_CMAKE_ON= -DHDF5_INCLUDE_DIRS=${LOCALBASE}/include HDF5_LDFLAGS= -lhdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_BROKEN= Missing hdf5.mod in hdf5 MPI_CONFIGURE_ENV= FLEUR_USE_MPI=1 MPI_CONFIGURE_ENV_OFF= FLEUR_USE_MPI=0 MPI_LDFLAGS= -lmpich -lmpifort MPI_LIB_DEPENDS= libmpich.so:net/mpich MPI_PLIST_FILES= bin/fleur_MPI SCALAPACK_DESC= Use the ScaLAPACK Scalable LAPACK library SCALAPACK_CMAKE_BOOL= FREEBSD_USE_SCALAPACK SCALAPACK_LDFLAGS= -lscalapack SCALAPACK_LIB_DEPENDS= libscalapack.so:math/scalapack SCALAPACK_IMPLIES= MPI ELPA_DESC= Use libelpa, Eigenvalue SoLver for Petaflop Applications ELPA_CMAKE_BOOL= FREEBSD_USE_ELPA ELPA_VARS= FFLAGS+=-I${LOCALBASE}/include/elpa-2018.05.001/modules ELPA_LDFLAGS= -lelpa ELPA_LIB_DEPENDS= libelpa.so:math/elpa ELPA_IMPLIES= MPI WANNIER_DESC= Use Wannier library WANNIER_CONFIGURE_ENV= FLEUR_USE_WANNIER=1 WANNIER_CONFIGURE_ENV_OFF= FLEUR_USE_WANNIER=0 WANNIER_LDFLAGS= -lwannier WANNIER_LIB_DEPENDS= libwannier.so:science/wannier90 PLIST_FILES= bin/fleur \ bin/inpgen .include Index: head/science/gamess-us/Makefile =================================================================== --- head/science/gamess-us/Makefile (revision 534184) +++ head/science/gamess-us/Makefile (revision 534185) @@ -1,91 +1,91 @@ # $FreeBSD$ PORTNAME= gamess DISTVERSION= 20181013 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= science PKGNAMESUFFIX= -us # "US" fork DISTNAME= gamess-current MAINTAINER= yuri@FreeBSD.org COMMENT= General Atomic and Molecular Electronic Structure System (US) LICENSE= GAMESS_LICENSE LICENSE_NAME= GAMESS User License Agreement LICENSE_FILE= ${FILESDIR}/license.txt LICENSE_PERMS= # none ONLY_FOR_ARCHS= amd64 i386 ONLY_FOR_ARCHS_REASON= only implemented for 64 and 32 bit Intel architectures BROKEN_i386= Integer too big for its kind at (1) (in file quanpo.f:16518:34) USES= fortran gmake WRKSRC= ${WRKDIR}/gamess BINARY_ALIAS= gcc=${CC} gfortran=gfortran${GCC_DEFAULT} GAMES_VERNO= 00 GAMES_ENV= GMS_PATH=${WRKSRC} GMS_BUILD_DIR=${WRKSRC} GMS_TARGET=${ARCH:S/amd64/linux64/:S/i386/linux32/} \ GMS_FORTRAN=gfortran GMS_GFORTRAN_VERNO=7.3 \ GMS_VERSION=${GAMES_VERNO} GMS_BUILD_PATH=${WRKSRC} \ GMS_OPENMP=false GMS_BG_MODEL="" GMS_SUN_OS_VERNO="" GMS_MAC_OSX_VERNO="" \ GMS_IFORT_VERNO="" GMS_SUN_FORT_VERNO="" GMS_L64_OPT="" GMS_MATHLIB="${GMS_MATHLIB}" GMS_MATHLIB_PATH=${LOCALBASE}/lib \ GMS_MKL_VERNO="" GMS_DDI_COMM="sockets" GMS_MPI_LIB="" GMS_MPI_PATH="" GMS_MVAPICH2_VERNO="" \ GMS_OFED_PATH="" GMS_ARMCI_PATH="" GMS_MSUCC="" GMS_LIBCCHEM="" GMS_PHI="" GMS_SHMTYPE="posix" PLIST_SUB+= GAMES_VERNO=${GAMES_VERNO} SUB_LIST+= GAMES_VERNO=${GAMES_VERNO} SUB_FILES= pkg-message OPTIONS_RADIO= MATHLIB OPTIONS_RADIO_MATHLIB= ATLAS OPENBLAS OPTIONS_DEFAULT= OPENBLAS MATHLIB_DESC= Math library ATLAS_VARS= GMS_MATHLIB=atlas ATLAS_LIB_DEPENDS= libatlas.so:math/atlas OPENBLAS_VARS= GMS_MATHLIB=openblas OPENBLAS_LIB_DEPENDS= libopenblas.so:math/openblas .include # Check for gamess sources and prompt how to download them .if !exists(${DISTDIR}/${DISTNAME}${EXTRACT_SUFX}) IGNORE= license restrictions require registration and manual fetching of the distribution\ source. Please visit https://www.msg.chem.iastate.edu/gamess/License_Agreement.html\ with a browser. You will be required to agree to the license terms, enter your e-mail\ address, check any box under "Source Code Distributions", and submit your download request.\ Once you download the file ${DISTFILES}, please put it into ${DISTDIR}/${DISTFILES} and\ run 'make' again .endif do-configure: @cd ${WRKSRC} && \ ${SETENV} ${MAKE_ENV} ${GAMES_ENV} ./config do-build: @cd ${WRKSRC}/ddi && ${SETENV} ${MAKE_ENV} ./compddi && ${MV} ddikick.x .. @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ./compall @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ./lked gamess ${GAMES_VERNO} do-install: ${INSTALL_SCRIPT} ${WRKSRC}/rungms ${STAGEDIR}${PREFIX}/bin @${REINPLACE_CMD} -i '' 's|^set GMSPATH=.*|set GMSPATH=${DATADIR}|' ${STAGEDIR}${PREFIX}/bin/rungms @${MKDIR} ${STAGEDIR}${DATADIR} ${INSTALL_PROGRAM} ${WRKSRC}/gamess.${GAMES_VERNO}.x ${STAGEDIR}${DATADIR} ${INSTALL_PROGRAM} ${WRKSRC}/ddikick.x ${STAGEDIR}${DATADIR} ${INSTALL_SCRIPT} ${WRKSRC}/gms-files.csh ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${DATADIR}/tools ${INSTALL_SCRIPT} ${WRKSRC}/tools/remd.csh ${STAGEDIR}${DATADIR}/tools/remd.csh cd ${WRKSRC} && ${COPYTREE_SHARE} auxdata ${STAGEDIR}${DATADIR}/ do-test: @${REINPLACE_CMD} -i '' 's|^set GMSPATH=.*|set GMSPATH=${WRKSRC}|' ${WRKSRC}/rungms @cd ${WRKSRC} && \ ${MKDIR} ../gamess-devv && \ ${SETENV} ${MAKE_ENV} ./runall ${GAMES_VERNO} && \ ${SETENV} ${MAKE_ENV} tests/standard/checktst .include Index: head/science/libcint/Makefile =================================================================== --- head/science/libcint/Makefile (revision 534184) +++ head/science/libcint/Makefile (revision 534185) @@ -1,28 +1,28 @@ # $FreeBSD$ PORTNAME= libcint DISTVERSIONPREFIX= v DISTVERSION= 3.0.19 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= General GTO integrals for quantum chemistry LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake blaslapack:openblas USE_GITHUB= yes GH_ACCOUNT= sunqm USE_LDCONFIG= yes PLIST_FILES= include/cint.h \ include/cint_funcs.h \ lib/libcint.so \ lib/libcint.so.${PORTVERSION:R:R} \ lib/libcint.so.${PORTVERSION} .include Index: head/science/multiwfn/Makefile =================================================================== --- head/science/multiwfn/Makefile (revision 534184) +++ head/science/multiwfn/Makefile (revision 534185) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= multiwfn DISTVERSIONPREFIX= v DISTVERSION= 3.4.1-0-14 -PORTREVISION= 4 +PORTREVISION= 5 DISTVERSIONSUFFIX= -ge873677 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Multifunctional wavefunction analysis for quantum chemistry LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas RUN_DEPENDS= bash:shells/bash USES= autoreconf gmake fortran shebangfix SHEBANG_GLOB= *.sh SHEBANG_FILES= init/Multiwfn.01 GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= stecue GH_PROJECT= gMultiwfn PLIST_FILES= bin/Multiwfn \ lib/gMultiwfn/Multiwfn .include Index: head/science/py-gpaw/Makefile =================================================================== --- head/science/py-gpaw/Makefile (revision 534184) +++ head/science/py-gpaw/Makefile (revision 534185) @@ -1,34 +1,34 @@ # $FreeBSD$ PORTNAME= gpaw DISTVERSION= 1.5.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DFT and beyond within the projector-augmented wave method in chemistry LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYNUMPY} LIB_DEPENDS= libmpich.so:net/mpich \ libopenblas.so:math/openblas \ libxc.so:science/libxc RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYNUMPY} USES= gettext-runtime localbase python:3.5+ shebangfix USE_PYTHON= distutils concurrent autoplist SHEBANG_FILES= tools/* post-patch: @${REINPLACE_CMD} "s|'/usr/local/|'${LOCALBASE}/|" ${WRKSRC}/gpaw/__init__.py post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/gpaw-python ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_gpaw.so .include Index: head/science/qiskit-aer/Makefile =================================================================== --- head/science/qiskit-aer/Makefile (revision 534184) +++ head/science/qiskit-aer/Makefile (revision 534185) @@ -1,25 +1,26 @@ # $FreeBSD$ PORTNAME= qiskit-aer DISTVERSION= 0.5.1 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Simulator for quantum circuits, including noise models LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt BROKEN_i386= undefined reference to `__atomic_load' LIB_DEPENDS= libfmt.so:devel/libfmt \ libopenblas.so:math/openblas \ libspdlog.so:devel/spdlog USES= cmake compiler:c++11-lang USE_GITHUB= yes GH_ACCOUNT= Qiskit PLIST_FILES= bin/qasm_simulator .include Index: head/science/qmcpack/Makefile =================================================================== --- head/science/qmcpack/Makefile (revision 534184) +++ head/science/qmcpack/Makefile (revision 534185) @@ -1,41 +1,42 @@ # $FreeBSD$ PORTNAME= qmcpack DISTVERSIONPREFIX= v DISTVERSION= 3.9.2 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Many-body ab initio Quantum Monte Carlo code for quantum chemstry LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= undefined reference to `__atomic_load' BUILD_DEPENDS= catch>0:devel/catch LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libfftw3.so:math/fftw3 \ libhdf5.so:science/hdf5 \ libmpich.so:net/mpich \ libopenblas.so:math/openblas \ libsz.so:science/szip USES= cmake compiler:c++11-lang fortran gnome localbase:ldflags pkgconfig python:build USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tu} USE_GNOME= libxml2 CXXFLAGS+= -I${LOCALBASE}/include/catch2 PROGS= convert4qmc qmc-check-affinity qmc-extract-eshdf-kvectors qmc-get-supercell qmcpack PLIST_FILES= ${PROGS:C/^/bin\//} BINARY_ALIAS= python=${PYTHON_CMD} do-install: .for p in ${PROGS} ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/bin/${p} ${STAGEDIR}${PREFIX}/bin .endfor .include Index: head/science/simbody/Makefile =================================================================== --- head/science/simbody/Makefile (revision 534184) +++ head/science/simbody/Makefile (revision 534185) @@ -1,53 +1,53 @@ # $FreeBSD$ PORTNAME= simbody DISTVERSIONPREFIX= Simbody- DISTVERSION= 3.7 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science biology PATCH_SITES= https://github.com/${PORTNAME}/${PORTNAME}/commit/ PATCHFILES= 1b306f66bcd15e9bf6b27882e2daa6375ac4cd2e.patch:-p1 MAINTAINER= yuri@FreeBSD.org COMMENT= Multibody dynamics library for (bio)mechanical systems simulation LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libopenblas.so:math/openblas USES= blaslapack:openblas cmake compiler:c++11-lang fortran # fortran only for openblas USE_GITHUB= yes USE_LDCONFIG= yes CMAKE_OFF= BUILD_TESTING CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DFREEBSD_EXAMPLESDIR=${EXAMPLESDIR} OPTIONS_DEFINE= DOCS VISUALIZER EXAMPLE_PROGRAMS # EXAMPLE_PROGRAMS significanly increases the build time and package size, so it is not called EXAMPLES to prevent it from being installed by default OPTIONS_DEFAULT= VISUALIZER OPTIONS_SUB= yes DOCS_CMAKE_BOOL= INSTALL_DOCS VISUALIZER_DESC= Build the visualizer component VISUALIZER_CMAKE_BOOL= BUILD_VISUALIZER VISUALIZER_USES= gl xorg VISUALIZER_USE= GL=gl,glu,glut XORG=xi,xmu EXAMPLE_PROGRAMS_DESC= Build and install example programs EXAMPLE_PROGRAMS_CMAKE_BOOL= BUILD_EXAMPLES PORTDOCS= * # this port installs examples into ${EXAMPLESDIR} when EXAMPLE_PROGRAMS=ON, but check-plist doesn't complain for some reason post-install-DOCS-on: # https://github.com/simbody/simbody/issues/652 @${RMDIR} ${STAGEDIR}${DOCSDIR}/api do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DBUILD_TESTING=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include