Index: head/biology/iqtree/Makefile
===================================================================
--- head/biology/iqtree/Makefile	(revision 533705)
+++ head/biology/iqtree/Makefile	(revision 533706)
@@ -1,36 +1,38 @@
 # $FreeBSD$
 
 PORTNAME=	iqtree
 DISTVERSIONPREFIX=	v
-DISTVERSION=	1.6.12
+DISTVERSION=	2.0.4
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
 COMMENT=	Efficient phylogenomic software by maximum likelihood
 
 LICENSE=	GPLv2
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BROKEN_aarch64=		fails to compile: unrecognized command line option '-msse3'
 BROKEN_armv6=		fails to compile: unrecognized command line options '-m32' and '-msse3'
 BROKEN_armv7=		fails to compile: unrecognized command line options '-m32' and '-msse3'
 BROKEN_powerpc64=	fails to build: GCC version must be at least 4.8!
 
+LIB_DEPENDS=	libboost_filesystem.so:devel/boost-libs
+
 USES=		cmake compiler:openmp eigen:3
 USE_GITHUB=	yes
 GH_ACCOUNT=	Cibiv
 GH_PROJECT=	IQ-TREE
 
 PLIST_FILES=	bin/iqtree
 PORTEXAMPLES=	example.cf example.nex example.phy models.nex
 
 OPTIONS_DEFINE=	EXAMPLES
 
 do-install:
-	${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree ${STAGEDIR}${PREFIX}/bin
+	${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree2 ${STAGEDIR}${PREFIX}/bin/iqtree
 
 do-install-EXAMPLES-on:
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	${INSTALL_DATA} ${WRKSRC}/example/* ${STAGEDIR}${EXAMPLESDIR}
 
 .include <bsd.port.mk>
Index: head/biology/iqtree/distinfo
===================================================================
--- head/biology/iqtree/distinfo	(revision 533705)
+++ head/biology/iqtree/distinfo	(revision 533706)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1566849788
-SHA256 (Cibiv-IQ-TREE-v1.6.12_GH0.tar.gz) = 9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284
-SIZE (Cibiv-IQ-TREE-v1.6.12_GH0.tar.gz) = 4864641
+TIMESTAMP = 1588445637
+SHA256 (Cibiv-IQ-TREE-v2.0.4_GH0.tar.gz) = 31e42259a518da057c61f2f8426cf63c16cc6c5b622fa04e83bf82ac4233ff76
+SIZE (Cibiv-IQ-TREE-v2.0.4_GH0.tar.gz) = 5264823