Index: head/biology/py-macs2/Makefile =================================================================== --- head/biology/py-macs2/Makefile (revision 531673) +++ head/biology/py-macs2/Makefile (revision 531674) @@ -1,31 +1,30 @@ # $FreeBSD$ PORTNAME= macs2 DISTVERSIONPREFIX= v -DISTVERSION= 2.2.6 -PORTREVISION= 1 +DISTVERSION= 2.2.7.1 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Identify transcription factor binding sites LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS= ${PYNUMPY} USES= python:3.6+ USE_PYTHON= autoplist concurrent cython distutils USE_GITHUB= yes GH_ACCOUNT= taoliu GH_PROJECT= MACS post-stage: ${STRIP_CMD} \ ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \ ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so .include Index: head/biology/py-macs2/distinfo =================================================================== --- head/biology/py-macs2/distinfo (revision 531673) +++ head/biology/py-macs2/distinfo (revision 531674) @@ -1,3 +1,3 @@ -TIMESTAMP = 1578626999 -SHA256 (taoliu-MACS-v2.2.6_GH0.tar.gz) = 7c51561787d15d85370b11c9121e4ab7174ce11cfde36043b9ee95de8451db3a -SIZE (taoliu-MACS-v2.2.6_GH0.tar.gz) = 133721230 +TIMESTAMP = 1586702732 +SHA256 (taoliu-MACS-v2.2.7.1_GH0.tar.gz) = 8ba25c367b84e237487b01be947239bee80e3ba123afc5e6034c374413b32913 +SIZE (taoliu-MACS-v2.2.7.1_GH0.tar.gz) = 134872405 Index: head/biology/py-macs2/files/patch-setup.py =================================================================== --- head/biology/py-macs2/files/patch-setup.py (nonexistent) +++ head/biology/py-macs2/files/patch-setup.py (revision 531674) @@ -0,0 +1,25 @@ +--- setup.py.orig 2020-04-12 14:46:03 UTC ++++ setup.py +@@ -26,22 +26,6 @@ def main(): + + cwd = os.path.abspath(os.path.dirname(__file__)) + +- # install required numpy +- p = subprocess.call([sys.executable, "-m", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd) +- if p != 0: +- # Could be due to a too old pip version and build isolation, check that +- try: +- # Note, pip may not be installed or not have been used +- import pip +- if LooseVersion(pip.__version__) < LooseVersion('18.0.0'): +- raise RuntimeError("Installing requirements failed. Possibly due " +- "to `pip` being too old, found version {}, " +- "needed is >= 18.0.0.".format(pip.__version__)) +- else: +- raise RuntimeError("Installing requirements failed!") +- except ImportError: +- raise RuntimeError("Installing requirement failed! `pip` has to be installed!") +- + from numpy import get_include as numpy_get_include + numpy_include_dir = [numpy_get_include()] + Property changes on: head/biology/py-macs2/files/patch-setup.py ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property