Index: head/biology/kallisto/Makefile
===================================================================
--- head/biology/kallisto/Makefile	(revision 530249)
+++ head/biology/kallisto/Makefile	(revision 530250)
@@ -1,39 +1,40 @@
 # $FreeBSD$
 
 PORTNAME=		kallisto
 DISTVERSIONPREFIX=	v
 DISTVERSION=		0.46.2
+PORTREVISION=		1
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Quantify abundances of transcripts from RNA-Seq data
 
 LICENSE=	BSD2CLAUSE
 LICENSE_FILE=	${WRKSRC}/license.txt
 
 LIB_DEPENDS=	libhdf5.so:science/hdf5 \
 		libsz.so:science/szip \
 		libhts.so:biology/htslib
 
 USES=		cmake:noninja compiler:c++11-lang localbase:ldflags
 USE_GITHUB=	yes
 GH_ACCOUNT=	pachterlab
 
 SUB_FILES=	kallisto-test
 
 PORTEXAMPLES=		*
 PLIST_FILES=		bin/kallisto
 EXAMPLES_PLIST_FILES=	bin/kallisto-test
 
 # hdf5 is being phased out and is no longer build in by default, but is still
 # required for Sleuth and other downstream tools.  Remove this after Sleuth
 # et all catch up.
 CMAKE_ARGS+=	-DUSE_HDF5:BOOL=ON
 
 OPTIONS_DEFINE=	EXAMPLES
 
 post-install-EXAMPLES-on:
 	${INSTALL_SCRIPT} ${WRKDIR}/kallisto-test ${STAGEDIR}${PREFIX}/bin
 	cd ${WRKSRC}/test && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}
 
 .include <bsd.port.mk>
Index: head/biology/kallisto/files/patch-src_Bootstrap.h
===================================================================
--- head/biology/kallisto/files/patch-src_Bootstrap.h	(nonexistent)
+++ head/biology/kallisto/files/patch-src_Bootstrap.h	(revision 530250)
@@ -0,0 +1,10 @@
+--- src/Bootstrap.h.orig	2020-04-01 16:56:42 UTC
++++ src/Bootstrap.h
+@@ -1,6 +1,7 @@
+ #ifndef KALLISTO_BOOTSTRAP_H
+ #define KALLISTO_BOOTSTRAP_H
+ 
++#include <sys/types.h>
+ #include <mutex>
+ #include <thread>
+ 

Property changes on: head/biology/kallisto/files/patch-src_Bootstrap.h
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
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Added: svn:mime-type
## -0,0 +1 ##
+text/plain
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