Index: head/biology/hyphy/Makefile =================================================================== --- head/biology/hyphy/Makefile (revision 526621) +++ head/biology/hyphy/Makefile (revision 526622) @@ -1,25 +1,23 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.3.14-16 -PORTREVISION= 2 -DISTVERSIONSUFFIX= -g3d88d3e6 +DISTVERSION= 2.5.4 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org COMMENT= Hypothesis testing using Phylogenies LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl -USES= compiler:c++14-lang cmake localbase:ldflags ssl +USES= compiler:openmp cmake localbase:ldflags ssl USE_GITHUB= yes GH_ACCOUNT= veg CMAKE_ON= NOAVX .include Index: head/biology/hyphy/distinfo =================================================================== --- head/biology/hyphy/distinfo (revision 526621) +++ head/biology/hyphy/distinfo (revision 526622) @@ -1,3 +1,3 @@ -TIMESTAMP = 1540036335 -SHA256 (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 459cd0a261ae5f31dc230847acbd294a4dc1e17fa69ef0c3db173c2b8808c826 -SIZE (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 8041349 +TIMESTAMP = 1582224548 +SHA256 (veg-hyphy-2.5.4_GH0.tar.gz) = ddd0a1911ebfe88bff841095e8ddf641b7cd0e5bec043b7b185069067add17f3 +SIZE (veg-hyphy-2.5.4_GH0.tar.gz) = 6177551 Index: head/biology/hyphy/files/patch-src_core_regex.cpp =================================================================== --- head/biology/hyphy/files/patch-src_core_regex.cpp (revision 526621) +++ head/biology/hyphy/files/patch-src_core_regex.cpp (nonexistent) @@ -1,13 +0,0 @@ ---- src/core/regex.cpp.orig 2018-05-10 18:11:45 UTC -+++ src/core/regex.cpp -@@ -31,10 +31,6 @@ - #pragma alloca - #endif - --#if !defined REGEX_MALLOC && !defined __MINGW32__ --#include --#endif -- - #ifndef _GNU_SOURCE - #define _GNU_SOURCE - #endif Property changes on: head/biology/hyphy/files/patch-src_core_regex.cpp ___________________________________________________________________ Deleted: fbsd:nokeywords ## -1 +0,0 ## -yes \ No newline at end of property Deleted: svn:eol-style ## -1 +0,0 ## -native \ No newline at end of property Deleted: svn:mime-type ## -1 +0,0 ## -text/plain \ No newline at end of property Index: head/biology/hyphy/files/patch-src_core_dataset.cpp =================================================================== --- head/biology/hyphy/files/patch-src_core_dataset.cpp (nonexistent) +++ head/biology/hyphy/files/patch-src_core_dataset.cpp (revision 526622) @@ -0,0 +1,11 @@ +--- src/core/dataset.cpp.orig 2020-02-20 18:58:13 UTC ++++ src/core/dataset.cpp +@@ -700,7 +700,7 @@ void _DataSet::MatchIndices(_Formula &f, _SimpleList & + receptacle << i; + } + } +- v->SetValue(new _Constant(0.0), nil); ++ v->SetValue(new _Constant(0.0), false); + } + + //_________________________________________________________ Property changes on: head/biology/hyphy/files/patch-src_core_dataset.cpp ___________________________________________________________________ Added: fbsd:nokeywords ## 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