Index: head/biology/bolt-lmm/Makefile =================================================================== --- head/biology/bolt-lmm/Makefile (revision 524641) +++ head/biology/bolt-lmm/Makefile (revision 524642) @@ -1,54 +1,54 @@ # $FreeBSD$ PORTNAME= bolt-lmm DISTVERSION= 2.3.4 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/ DISTNAME= BOLT-LMM_v${PORTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= Mixed model association testing and variance component analysis LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/license.txt LIB_DEPENDS= libnlopt.so:math/nlopt \ libopenblas.so:math/openblas \ libboost_program_options.so:devel/boost-libs # gcc-c++11-lib needed to link with boost. Also requires compiler:openmp, but # both merely add a GCC requirement. USES= compiler:gcc-c++11-lib gmake BUILD_WRKSRC= ${WRKDIR}/${DISTNAME}/src INSTALL_WRKSRC= ${WRKDIR}/${DISTNAME}/src CXXFLAGS_i386= -DUSE_SSE -msse -msse2 CXXFLAGS_amd64= -DUSE_SSE CXXFLAGS_powerpc64= -DNO_WARN_X86_INTRINSICS -mvsx MAKE_ARGS= BOOST_INSTALL_DIR=${LOCALBASE} \ NLOPT_INSTALL_DIR=${LOCALBASE} \ ZLIB_STATIC_DIR=/usr/lib \ LIBSTDCXX_STATIC_DIR=/usr/lib \ GLIBC_STATIC_DIR=/usr/lib \ SSEFLAGS="" \ MEMCPY="" \ LLAPACK="-lopenblas -lgfortran" PORTEXAMPLES= * OPTIONS_DEFINE= EXAMPLES pre-configure: @${RM} ${WRKSRC}/example/*.orig ${WRKSRC}/bolt @${REINPLACE_CMD} -e 's|tables/|${DATADIR}/tables/|g' \ ${BUILD_WRKSRC}/BoltParams.cpp @${REINPLACE_CMD} -e 's|../tables/|${DATADIR}/tables/|g' \ ${WRKSRC}/example/run_example.sh do-install: ${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/bolt ${STAGEDIR}${PREFIX}/bin (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC} && ${COPYTREE_SHARE} tables ${STAGEDIR}${DATADIR}) .include Index: head/biology/gemma/Makefile =================================================================== --- head/biology/gemma/Makefile (revision 524641) +++ head/biology/gemma/Makefile (revision 524642) @@ -1,39 +1,39 @@ # $FreeBSD$ PORTNAME= gemma DISTVERSION= 0.98.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Genome-wide Efficient Mixed Model Association LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libgsl.so:math/gsl USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \ localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= genetics-statistics GH_PROJECT= GEMMA MAKEFILE= ${FILESDIR}/Makefile # Assuming openblas is built with pthreads, not openmp CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -pthread LDFLAGS+= -lopenblas -pthread OPTIONS_DEFINE= EXAMPLES pre-configure: @${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) do-test: (cd ${WRKSRC}/test && ${SH} test_suite.sh) .include Index: head/biology/treekin/Makefile =================================================================== --- head/biology/treekin/Makefile (revision 524641) +++ head/biology/treekin/Makefile (revision 524642) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= treekin DISTVERSION= 0.5.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= https://www.tbi.univie.ac.at/RNA/packages/source/ DISTNAME= Treekin-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Efficient computation of RNA folding dynamics LICENSE= LatticeLib LICENSE_NAME= LatticeLib Disclaimer and Copyright LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= auto-accept dist-mirror pkg-mirror BUILD_DEPENDS= lapacke>0:math/lapacke USES= blaslapack:netlib compiler:c++11-lang fortran gmake \ localbase:ldflags GNU_CONFIGURE= yes BINARY_ALIAS= make=${GMAKE} PLIST_FILES= bin/${PORTNAME} \ man/man1/${PORTNAME}.1.gz .include Index: head/cad/calculix-ccx/Makefile =================================================================== --- head/cad/calculix-ccx/Makefile (revision 524641) +++ head/cad/calculix-ccx/Makefile (revision 524642) @@ -1,82 +1,82 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= ccx PORTVERSION= 2.16 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= cad MASTER_SITES= http://www.dhondt.de/ PKGNAMEPREFIX= CalculiX- DISTFILES= ${DIST_SOURCES} DIST_SUBDIR= calculix EXTRACT_ONLY= ${DIST_SOURCES} MAINTAINER= pfg@FreeBSD.org COMMENT= Three-Dimensional Structural Finite Element Program LICENSE= GPLv2 LIB_DEPENDS= libarpack.so:math/arpack-ng \ libspooles.so:math/spooles USES= blaslapack compiler:openmp fortran gmake tar:bzip2 USE_PERL5= build DIST_SOURCES= ccx_${PORTVERSION}.src${EXTRACT_SUFX} DIST_HTM= ccx_${PORTVERSION}.htm${EXTRACT_SUFX} DIST_PS= ccx_${PORTVERSION}.ps${EXTRACT_SUFX} DIST_EXAMPLES= ccx_${PORTVERSION}.test${EXTRACT_SUFX} ALL_TARGET= #Empty CCX_VER= ccx_${PORTVERSION} WRKSRC= ${WRKDIR}/CalculiX/${CCX_VER}/src DOCSDIR= ${PREFIX}/share/doc/CalculiX OPTIONS_DEFINE= DOCS EXAMPLES .include .if ${PORT_OPTIONS:MDOCS} DISTFILES+= ${DIST_HTM} ${DIST_PS} EXTRACT_ONLY+= ${DIST_HTM} ${DIST_PS} .endif .if $(PORT_OPTIONS:MEXAMPLES) DISTFILES+= ${DIST_EXAMPLES} EXTRACT_ONLY+= ${DIST_EXAMPLES} .endif .if ${ARCH} == "sparc64" CFLAGS+= -fPIC FFLAGS+= -fPIC .else CFLAGS+= -fpic FFLAGS+= -fpic .endif pre-build: @${REINPLACE_CMD} -e 's+%%FC%%+${FC}+g ; s+%%CC%%+${CC}+g ; \ s+%%BLAS_LIBS%%+${BLASLIB}+ ; \ s+%%LAPACK_LIBS%%+${LAPACKLIB}+ ; \ s+%%LOCALBASE%%+${LOCALBASE}+g;' \ ${WRKSRC}/Makefile do-install: ${INSTALL_PROGRAM} ${WRKSRC}/${CCX_VER} \ ${STAGEDIR}${PREFIX}/bin/ccx do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} @(cd ${WRKDIR}/CalculiX/${CCX_VER}/doc/ccx && ${COPYTREE_SHARE} . \ ${STAGEDIR}${DOCSDIR}/ccx) ${INSTALL_DATA} ${WRKDIR}/CalculiX/${CCX_VER}/doc/${CCX_VER}.ps \ ${STAGEDIR}${DOCSDIR} @${GZIP_CMD} ${STAGEDIR}${DOCSDIR}/${CCX_VER}.ps do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} @(cd ${WRKDIR}/CalculiX/${CCX_VER}/test && ${COPYTREE_SHARE} . \ ${STAGEDIR}${EXAMPLESDIR}) .include Index: head/cad/gmsh/Makefile =================================================================== --- head/cad/gmsh/Makefile (revision 524641) +++ head/cad/gmsh/Makefile (revision 524642) @@ -1,72 +1,72 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= gmsh DISTVERSION= 4.3.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= cad MASTER_SITES= http://gmsh.info/src/ DISTNAME= ${PORTNAME}-${PORTVERSION}-source DIST_SUBDIR= gmsh MAINTAINER= wen@FreeBSD.org COMMENT= Automatic 3D finite element mesh generator LICENSE= AGPLv3+ APACHE20 GPLv3+ GPLv2+ LGPL21 LICENSE_COMB= multi LIB_DEPENDS= libfltk.so:x11-toolkits/fltk \ libfontconfig.so:x11-fonts/fontconfig \ libgmp.so:math/gmp \ libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ libsz.so:science/szip \ libfreetype.so:print/freetype2 RUN_DEPENDS= getdp:science/getdp USES= blaslapack compiler:c++11-lang cmake fortran gl jpeg tar:tgz \ xorg USE_GL= gl glu USE_XORG= x11 xcursor xext xinerama xfixes xft xrender CMAKE_ARGS= -DCMAKE_SKIP_RPATH:BOOL=YES OPTIONS_DEFINE= CGNS DOCS MED OCC SHARED STATIC OPTIONS_DEFAULT= CGNS MED OCC OPTIONS_SUB= yes CGNS_DESC= Enable CGNS mesh import MED_DESC= Enable MED mesh and post file formats OCC_DESC= Enable OpenCASCADE geometrical models SHARED_DESC= Build shared library and install header files STATIC_DESC= Build static library PLIST_SUB= VER=${PORTVERSION} VE=${PORTVERSION:R} # TODO # Dependencies against PythonLibs, swig and petsc are found and registered if # installed # => add knobs to handle them. CGNS_CMAKE_BOOL= ENABLE_CGNS CGNS_LIB_DEPENDS= libcgns.so:science/cgnslib DOCS_CMAKE_BOOL= INSTALL_DOCS MED_CMAKE_BOOL= ENABLE_MED MED_LIB_DEPENDS= libmed.so:french/med OCC_CMAKE_BOOL= ENABLE_OCC OCC_CMAKE_ON= -DOCC_INC=${LOCALBASE}/include/OpenCASCADE OCC_LIB_DEPENDS= libopenblas.so:math/openblas libTKernel.so:cad/opencascade OCC_USES= gnome OCC_USE= gnome=cairo SHARED_CMAKE_BOOL= ENABLE_BUILD_SHARED SHARED_USE= LDCONFIG=yes STATIC_CMAKE_BOOL= ENABLE_BUILD_LIB post-patch: @${REINPLACE_CMD} -e "s|share/doc/gmsh|${DOCSDIR_REL}|" \ -e 's|share/man/man1|man/man1|' ${WRKSRC}/CMakeLists.txt post-install-SHARED-on: ${RM} -r ${STAGEDIR}/wrkdirs .include Index: head/cad/pdnmesh/Makefile =================================================================== --- head/cad/pdnmesh/Makefile (revision 524641) +++ head/cad/pdnmesh/Makefile (revision 524642) @@ -1,52 +1,52 @@ # Created by: Sarod Yatawatta # $FreeBSD$ PORTNAME= pdnmesh PORTVERSION= 0.2.2 -PORTREVISION= 17 +PORTREVISION= 18 CATEGORIES= cad MASTER_SITES= SF/${PORTNAME}/${PORTNAME}-source/${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Mesh generator and solver for Finite Element problems LICENSE= GPLv2+ LIB_DEPENDS= libgtkglext-x11-1.0.so:x11-toolkits/gtkglext OPTIONS_DEFINE= ATLAS DOCS EXAMPLES ATLAS_DESC= Enable ATLAS support USES= compiler:c++11-lang fortran gl gnome pkgconfig USE_GL= glu USE_GNOME= gtk20 GNU_CONFIGURE= yes LDFLAGS+= -lm DESKTOP_ENTRIES="pdnMesh" "${COMMENT}" "" "${PORTNAME}" "" true ATLAS_USES= blaslapack:atlas ATLAS_CONFIGURE_ON=--with-blas=cblas --with-lapack=alapack ATLAS_USES_OFF= blaslapack ATLAS_CONFIGURE_OFF=--with-blas=blas --with-lapack=lapack post-patch: @${REINPLACE_CMD} -e \ '/^SUBDIRS/s|doc|| ; \ s|^pkgdata_DATA|#pkgdata_DATA|' ${WRKSRC}/Makefile.in post-install-DOCS-on: ${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC} \ && ${INSTALL_DATA} ChangeLog ${STAGEDIR}${DOCSDIR} \ && ${INSTALL_DATA} README ${STAGEDIR}${DOCSDIR}) ${MKDIR} ${STAGEDIR}${DOCSDIR}/tutorial (cd ${WRKSRC}/doc/tutorial \ && ${INSTALL_DATA} README ${STAGEDIR}${DOCSDIR}/tutorial \ && ${INSTALL_DATA} tutorial.* ${STAGEDIR}${DOCSDIR}/tutorial) post-install-EXAMPLES-on: (cd ${WRKSRC}/doc/examples && \ ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) ${RM} ${STAGEDIR}${EXAMPLESDIR}/Makefile* .include Index: head/databases/grass7/Makefile =================================================================== --- head/databases/grass7/Makefile (revision 524641) +++ head/databases/grass7/Makefile (revision 524642) @@ -1,199 +1,199 @@ # Created by: Mikael URANKAR and Loïc BARTOLETTI # $FreeBSD$ PORTNAME= grass PORTVERSION= 7.6.1 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= databases geography MASTER_SITES= https://grass.osgeo.org/%SUBDIR%/ \ http://grass.cict.fr/%SUBDIR%/ \ http://grass.fbk.eu/%SUBDIR%/ \ http://grass.gis-lab.info/%SUBDIR%/ \ http://grass.meteo.uni.wroc.pl/%SUBDIR%/ \ http://grass.polytechnic.edu.na/%SUBDIR%/ \ http://grass.unibuc.ro/%SUBDIR%/ \ http://mirrors.ibiblio.org/grass/%SUBDIR%/ \ http://pinus.gntech.ac.kr/grass/%SUBDIR%/ \ http://wgbis.ces.iisc.ernet.in/grass/%SUBDIR%/ \ http://wgrass.media.osaka-cu.ac.jp/grassh/%SUBDIR%/ MASTER_SITE_SUBDIR= grass${VER}/source PKGNAMESUFFIX= 7 MAINTAINER= lbartoletti@FreeBSD.org COMMENT= Open source Geographical Information System (GIS) LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/GPL.TXT BROKEN_sparc64= Does not configure on sparc64 BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.2:math/py-numpy@${PY_FLAVOR} LIB_DEPENDS= libgdal.so:graphics/gdal \ libpng.so:graphics/png \ libproj.so:graphics/proj \ libtiff.so:graphics/tiff \ libfftw3.so:math/fftw3 \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libgeos.so:graphics/geos RUN_DEPENDS= bash:shells/bash USES= blaslapack fortran gmake gl gnome \ iconv jpeg perl5 pkgconfig python:2.7 \ readline shebangfix tk xorg SHEBANG_LANG= nviz nviz_OLD_CMD= nviz nviz_CMD= ${PREFIX}/${GRASS_INST_DIR}/bin/nviz USE_XORG= sm ice x11 xext xi xmu xrender xt USE_GL= gl glu USE_GNOME= cairo USE_WX= 3.0 WX_COMPS= wx:build python:run USE_GCC= yes GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-includes=${LOCALBASE}/include \ --with-libs=${LOCALBASE}/lib \ --with-opengl-includes=${LOCALBASE}/include/ \ --with-opengl-libs=${LOCALBASE}/lib/ \ --with-freetype \ --with-freetype-includes=${LOCALBASE}/include/freetype2 \ --with-blas \ --with-lapack \ --with-cairo \ --with-readline \ --enable-largefile \ --with-wxwidgets=${WX_CONFIG} \ --with-proj-share=${LOCALBASE}/share/proj \ --with-geos=${LOCALBASE}/bin/geos-config \ --with-gdal=${LOCALBASE}/bin/gdal-config \ --with-pthread=yes #--with-openmp ALL_TARGET= default USE_LDCONFIG= ${PREFIX}/${GRASS_INST_DIR}/lib MAKE_ENV+= TARGET="${CONFIGURE_TARGET}" VER= ${PORTVERSION:R:C/\.//} PLIST_SUB= GRASS_INST_DIR="${GRASS_INST_DIR}" \ VERSION="${PORTVERSION}" VERS="${PORTVERSION:C/([0-9]+).([0-9]+)(.*)/\1.\2/}" \ VER="${VER}" MAJVER="${PKGNAMESUFFIX}" OPTIONS_DEFINE= LAS NETCDF NLS PDAL ZSTD OPTIONS_MULTI= DB OPTIONS_MULTI_DB= MYSQL ODBC PGSQL SQLITE #OPTIONS_SINGLE= BLAS #OPTIONS_SINGLE_BLAS= ATLAS NETLIB GOTOBLAS OPENBLAS OPTIONS_DEFAULT= LAS NETCDF NLS PDAL PGSQL SQLITE ZSTD OPTIONS_SUB= yes # BLAS/LAPACK: Only netlib compile the maxmimum number of modules #BLAS_DESC= BLAS/LAPACK support #GOTOBLAS_DESC= GotoBLAS implementationS #ATLAS_USES= blaslapack:atlas #NETLIB_USES= blaslapack #GOTOBLAS_USES= blaslapack:gotoblas #OPENBLAS_USES= blaslapack:openblas LAS_DESC= Enable LiDAR modules PDAL_DESC= Enable points cloud data modules DB_DESC= Database support NLS_CONFIGURE_WITH= nls NLS_USES= gettext LAS_CONFIGURE_ON= --with-liblas=yes LAS_LIB_DEPENDS= liblas.so:devel/liblas \ libboost_program_options.so:devel/boost-libs \ libboost_thread.so:devel/boost-libs \ libgeotiff.so:graphics/libgeotiff MYSQL_USES= mysql MYSQL_CONFIGURE_ON= --with-mysql \ --with-mysql-includes=${LOCALBASE}/include/mysql \ --with-mysql-libs=${LOCALBASE}/lib/mysql NETCDF_CONFIGURE_ON= --with-netcdf=${LOCALBASE}/bin/nc-config NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf ODBC_LIB_DEPENDS= libodbc.so:databases/unixODBC ODBC_CONFIGURE_ON= --with-odbc PDAL_CONFIGURE_ON= --with-pdal=${LOCALBASE}/bin/pdal-config PDAL_LIB_DEPENDS= libpdal_base.so:math/pdal PGSQL_USES= pgsql PGSQL_CONFIGURE_ON= --with-postgres SQLITE_USES= sqlite SQLITE_CONFIGURE_ON= --with-sqlite SQLITE_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sqlite3>0:databases/py-sqlite3@${PY_FLAVOR} ZSTD_CONFIGURE_WITH= zstd ZSTD_LIB_DEPENDS= libzstd.so:archivers/zstd .include .if !defined (GRASS_INST_DIR) GRASS_INST_DIR= ${PORTNAME}${VER} .endif MANDIRS= ${PREFIX}/grass${VER}/docs/man/man1 post-patch: ${REINPLACE_CMD} -e \ 's|-lblas|${BLASLIB}|g ; \ s|-llapack|${LAPACKLIB}|g ; \ s|g2c|f2c|g' ${WRKSRC}/configure ${REINPLACE_CMD} -e \ 's|make -C|$$(MAKE) -C| ; \ /^BINDIR/s|=.*|= $${DESTDIR}$${UNIX_BIN}| ; \ /test /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /tar /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /chmod /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /tar /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /rm /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /$$(MAKE) /s| $$(INST_DIR)| $${DESTDIR}$${INST_DIR}|g ; \ /^$$(INST_DIR)\//s|$$(INST_DIR)|$${DESTDIR}$${INST_DIR}|g ; \ s|> $$(INST_DIR)|> $${DESTDIR}$${INST_DIR}|' ${WRKSRC}/include/Make/Install.make ${REINPLACE_CMD} \ 's|= python|= ${PYTHON_CMD:T}|' ${WRKSRC}/include/Make/Platform.make.in ${REINPLACE_CMD} \ "s|'make'|'gmake'|g" ${WRKSRC}/scripts/g.extension/g.extension.py ${REINPLACE_CMD} \ 's|$$(ARCH)|$$(TARGET)|g' ${WRKSRC}/include/Make/Grass.make # Replace hardcoded python interpreter to PYTHON_CMD ${REINPLACE_CMD} "s|'GRASS_PYTHON', 'python'|'GRASS_PYTHON', \'${PYTHON_CMD}\'|g" \ ${WRKSRC}/scripts/wxpyimgview/wxpyimgview.py ${REINPLACE_CMD} 's|GRASS_PYTHON=python|GRASS_PYTHON=${PYTHON_CMD}|g' \ ${WRKSRC}/lib/init/grass.sh ${REINPLACE_CMD} \ "s|environ\['GRASS_PYTHON'\] = "'"python"'"|environ['GRASS_PYTHON'] = "'"${PYTHON_CMD}"'"|g" \ ${WRKSRC}/lib/python/script/setup.py cd ${WRKSRC}; \ for i in `${FIND} . -type f -print`; do \ ${REINPLACE_CMD} \ 's|#!/usr/bin/env python|#!/usr/bin/env ${PYTHON_CMD}|' $$i; \ done post-install: ${RM} -rf ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/demolocation/PERMANENT/.tmp/ ${RM} -rf ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/docs/html/colortables/*bak.png ${MKDIR} ${STAGEDIR}${LOCALBASE}/${PORTNAME}${VER}/docs/html/ .for file in i_atcorr_B02_atcorr.png \ i_ortho_photo_step1.png \ i_ortho_photo_step5.png \ i_ortho_photo_step6.png \ i_ortho_photo_step7.png \ i_ortho_photo_step8.png \ r.viewshed.png \ rterraflow_accumulation.png \ rterraflow_dir2.png \ rterraflow_dir3.png \ sweep1.png \ sweep2.png ${TOUCH} ${STAGEDIR}${LOCALBASE}/${PORTNAME}${VER}/docs/html/${file} .endfor ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/bin/* ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/driver/db/* .for i in clean_temp current_time_s_ms echo i.find lock run r.watershed/seg r.watershed/ram ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/${i} .endfor ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/etc/lister/* ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/lib/libgrass_*.so ${STRIP_CMD} ${STAGEDIR}${PREFIX}/${GRASS_INST_DIR}/tools/g.echo ${LN} -sf ${PORTNAME}${VER} \ ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${LN} -s ${PORTNAME}${VER} \ ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} .include Index: head/devel/ocaml-lacaml/Makefile =================================================================== --- head/devel/ocaml-lacaml/Makefile (revision 524641) +++ head/devel/ocaml-lacaml/Makefile (revision 524642) @@ -1,65 +1,65 @@ # Created by: Stanislav Sedov # $FreeBSD$ PORTNAME= lacaml PORTVERSION= 8.0.7 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= devel MASTER_SITES= https://github.com/mmottl/lacaml/releases/download/v${PORTVERSION}/ PKGNAMEPREFIX= ocaml- MAINTAINER= ports@FreeBSD.org COMMENT= OCaml interface to BLAS and LAPACK libraries LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING.txt BUILD_DEPENDS= ocamlbuild:devel/ocaml-ocamlbuild USE_OCAML= yes USE_OCAML_FINDLIB=yes USE_OCAMLFIND_PLIST=yes USE_OCAML_LDCONFIG=yes USE_OCAML_WASH= yes OCAMLFIND_LDCONF=ignore USES= blaslapack fortran HAS_CONFIGURE= yes CONFIGURE_ARGS= --prefix ${PREFIX} --disable-docs --disable-examples \ --override conf_ccopt "${CFLAGS}" \ --override conf_cclib "${LDFLAGS}" MAKE_JOBS_UNSAFE=yes CFLAGS+= -fPIC -DEXTERNAL_EXP10 LDFLAGS+= -L${LOCALBASE}/lib DOCSDIR= ${OCAML_DOCSDIR}/${PORTNAME} EXAMPLESDIR= ${OCAML_EXAMPLESDIR}/${PORTNAME} PORTDOCS= * PORTEXAMPLES= * OPTIONS_DEFINE= DOCS EXAMPLES post-patch: @${REINPLACE_CMD} -e \ 's|%%BLASLIB%%|${BLASLIB}| ; \ s|%%LAPACKLIB%%|${LAPACKLIB}| ; \ s|%%LOCALBASE%%|${LOCALBASE}|' ${WRKSRC}/myocamlbuild.ml post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${OCAML_SITELIBDIR}/lacaml/*.cmxs @${STRIP_CMD} ${STAGEDIR}${PREFIX}/${OCAML_SITELIBDIR}/lacaml/*.so post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} .for i in AUTHORS.txt CHANGES.txt README.md TODO.md (cd ${WRKSRC} && ${INSTALL_DATA} ${i} \ ${STAGEDIR}${DOCSDIR}) .endfor post-install-EXAMPLES-on: @(cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . \ ${STAGEDIR}${EXAMPLESDIR}) .include Index: head/games/leela-zero/Makefile =================================================================== --- head/games/leela-zero/Makefile (revision 524641) +++ head/games/leela-zero/Makefile (revision 524642) @@ -1,35 +1,35 @@ # $FreeBSD$ PORTNAME= leela-zero DISTVERSIONPREFIX= v DISTVERSION= 0.17 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= games MAINTAINER= yuri@FreeBSD.org COMMENT= Go engine without human-provided knowledge based on AlphaGo Zero paper LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= opencl>0:devel/opencl LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs \ libopenblas.so:math/openblas \ libOpenCL.so:devel/ocl-icd USES= cmake compiler:c++14-lang eigen:3 localbase qt:5 USE_GITHUB= yes GH_TUPLE= google:googletest:cafa9e5:gtest/gtest USE_QT= core widgets buildtools_build qmake_build CMAKE_ON= USE_BLAS BUILD_TESTING CMAKE_ARGS= -DBLAS_INCLUDE_DIRS:STRING=${LOCALBASE}/include PLIST_FILES= bin/autogtp \ bin/leelaz \ bin/validation do-test: @cd ${WRKSRC} && ${MKDIR} .build && ${CP} ../.build/tests .build && cd .build && ./tests .include Index: head/graphics/caffe/Makefile =================================================================== --- head/graphics/caffe/Makefile (revision 524641) +++ head/graphics/caffe/Makefile (revision 524642) @@ -1,85 +1,85 @@ # $FreeBSD$ PORTNAME= caffe PORTVERSION= 1.0 -PORTREVISION= 30 +PORTREVISION= 31 CATEGORIES= graphics MAINTAINER= eric@camachat.org COMMENT= Fast open framework for deep learning LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE CONFLICTS_INSTALL= caffe2-* BUILD_DEPENDS= ${PYNUMPY} \ bash:shells/bash LIB_DEPENDS= libsnappy.so:archivers/snappy \ libleveldb.so:databases/leveldb \ liblmdb.so:databases/lmdb \ libboost_system.so:devel/boost-libs \ ${PY_BOOST} \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libprotobuf.so:devel/protobuf \ libopencv_highgui.so:graphics/opencv \ libopencv_core.so:graphics/opencv-core \ libopenblas.so:math/openblas \ libhdf5.so:science/hdf5 RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}protobuf>=2.5.0:devel/py-protobuf@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scikit-image>=0.12:graphics/py-scikit-image@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pillow>=1.7:graphics/py-pillow@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}networkx>=1.8:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}PyWavelets>=0.4:math/py-PyWavelets@${PY_FLAVOR} USES= compiler:c++11-lib fortran gmake pkgconfig python:2.7 USE_CXXSTD= c++11 USE_LDCONFIG= yes USE_PYTHON= flavors cython CXXFLAGS+= -DGTEST_USE_OWN_TR1_TUPLE=1 LDFLAGS+= -DGTEST_USE_OWN_TR1_TUPLE=1 LDFLAGS+= -lboost_thread MAKE_ENV+= PYTHON_LIBRARIES="${PY_BOOST_LIB} ${PYTHON_VERSION}" MAKE_ARGS+= DISTRIBUTE_DIR=${STAGEDIR}${PREFIX} ALL_TARGET= all py INSTALL_TARGET= dist TEST_TARGET= runtest PLIST_SUB= PYTHON_SITELIBDIR=${PYTHON_SITELIBDIR} DATADIR=${DATADIR} GH_ACCOUNT= BVLC USE_GITHUB= yes .include .if ${CHOSEN_COMPILER_TYPE} == clang TRUE_CXX= clang++ .else TRUE_CXX= g++${GCC_DEFAULT} .endif post-extract: @${CP} -v ${.CURDIR}/files/Makefile.config ${WRKSRC}/ post-patch: @${REINPLACE_CMD} \ -e "s|%%CXX%%|${TRUE_CXX}|g" \ -e "s|%%LOCALBASE%%|${LOCALBASE}|g" \ -e "s|%%DATADIR%%|${DATADIR}|g" \ -e "s|%%PYTHON_INCLUDEDIR%%|${PYTHON_INCLUDEDIR}|g" \ -e "s|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|g" \ -e "s|%%STAGEDIR%%|${STAGEDIR}|g" \ ${WRKSRC}/Makefile.config ${WRKSRC}/Makefile pre-install: @${MKDIR} ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${PYTHON_SITELIBDIR} post-install: @${STRIP_CMD} ${STAGEDIR}/${PREFIX}/bin/* ${STAGEDIR}/${PREFIX}/lib/*.so.* \ ${STAGEDIR}/${PYTHON_SITELIBDIR}/${PORTNAME}/*.so .include Index: head/graphics/gimp-refocus-plugin/Makefile =================================================================== --- head/graphics/gimp-refocus-plugin/Makefile (revision 524641) +++ head/graphics/gimp-refocus-plugin/Makefile (revision 524642) @@ -1,60 +1,60 @@ # Created by: Mario Sergio Fujikawa Ferreira # $FreeBSD$ PORTNAME= refocus PORTVERSION= 0.9.0 -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= graphics MASTER_SITES= SF PKGNAMEPREFIX= gimp- PKGNAMESUFFIX= -plugin MAINTAINER= ports@FreeBSD.org COMMENT= GIMP plugin to "refocus" images through FIR Wiener filtering LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgimp-2.0.so:graphics/gimp-app \ libfreetype.so:print/freetype2 \ libfontconfig.so:x11-fonts/fontconfig USES= autoreconf compiler:c++11-lang gettext gmake gnome pathfix \ pkgconfig GNU_CONFIGURE= yes CONFIGURE_ENV= GIMPTOOL=${LOCALBASE}/bin/gimptool-2.0 USE_GNOME= atk cairo gdkpixbuf2 glib20 gtk20 pango GIMP_PLUGIN_DIR= libexec/gimp/2.2/plug-ins PLIST_FILES= ${GIMP_PLUGIN_DIR}/${PORTNAME} PORTDOCS= * OPTIONS_DEFINE= ATLAS DOCS OPTIMIZED_CFLAGS OPTIONS_DEFAULT= OPTIMIZED_CFLAGS ATLAS_DESC= Build with optimized math/atlas instead of builtin ATLAS_USES= blaslapack:atlas fortran ATLAS_BUILD_DEPENDS= f2c>0:lang/f2c ATLAS_CONFIGURE_ON= --with-lapack-libs="${LAPACKLIB} ${BLASLIB}" \ --with-lapack-includes="-I${LOCALBASE}/include" OPTIMIZED_CFLAGS_CFLAGS= -O3 post-patch: @${FIND} ${WRKSRC} -name Makefile.am \ -exec ${REINPLACE_CMD} -e "s|; make|; ${MAKE_CMD}|" {} \; @${REINPLACE_CMD} -e "s|%%WRKSRC%%|${WRKSRC}|" \ ${WRKSRC}/configure.in do-install: @${MKDIR} ${STAGEDIR}${PREFIX}/${GIMP_PLUGIN_DIR}/ ${INSTALL_PROGRAM} ${WRKSRC}/src/${PORTNAME} \ ${STAGEDIR}${PREFIX}/${GIMP_PLUGIN_DIR}/ do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/*html ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/*pdf ${STAGEDIR}${DOCSDIR} .include Index: head/lang/julia06/Makefile =================================================================== --- head/lang/julia06/Makefile (revision 524641) +++ head/lang/julia06/Makefile (revision 524642) @@ -1,198 +1,198 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 0.6.4 DISTVERSIONSUFFIX= -full -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 06 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/${PORTNAME} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ SOVERSION="${PORTVERSION}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= EXAMPLES DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= ARPACK OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs EXAMPLESDIR= ${PREFIX}/share/examples/${PORTNAME}${PKGNAMESUFFIX} PORTEXAMPLES= * EXAMPLES_VARS= INSTALL_TARGET+=install-examples GPL_LIBS_DESC= Build with GPL libs: FFTW and SUITESPARSE GPL_LIBS_LIB_DEPENDS= libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 USE_SYSTEM_FFTW=1 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes ARPACK_DESC= Build self-shipped private arpack-ng ARPACK_MAKE_ARGS= USE_SYSTEM_ARPACK=0 ARPACK_MAKE_ARGS_OFF= USE_SYSTEM_ARPACK=1 ARPACK_LIB_DEPENDS_OFF= libarpack.so:math/arpack-ng SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.0\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${GMAKE} -C ${WRKSRC}/deps extract post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-EXAMPLES-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/examples/julia ${STAGEDIR}${EXAMPLESDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/examples .include Index: head/lang/julia07/Makefile =================================================================== --- head/lang/julia07/Makefile (revision 524641) +++ head/lang/julia07/Makefile (revision 524642) @@ -1,183 +1,183 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 0.7.0 DISTVERSIONSUFFIX= -full -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 07 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/${PORTNAME} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ SOVERSION="${PORTVERSION}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs GPL_LIBS_DESC= Build with GPL lib: SUITESPARSE GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.2\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${GMAKE} -C ${WRKSRC}/deps extract post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc .include Index: head/lang/julia10/Makefile =================================================================== --- head/lang/julia10/Makefile (revision 524641) +++ head/lang/julia10/Makefile (revision 524642) @@ -1,188 +1,188 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 1.0.4 -PORTREVISION= 1 +PORTREVISION= 2 DISTVERSIONSUFFIX= -full CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 10 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 \ shebangfix USE_LDCONFIG= yes DESCR= ${.CURDIR}/../julia/pkg-descr SHEBANG_GLOB= *.sh WRKSRC= ${WRKDIR}/julia-${PORTVERSION} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs GPL_LIBS_DESC= Build with GPL lib: SUITESPARSE GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.2\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${MAKE_CMD} -C ${WRKSRC}/deps extract ${MAKE_CMD} -C ${WRKSRC}/stdlib install post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc .include Index: head/lang/julia11/Makefile =================================================================== --- head/lang/julia11/Makefile (revision 524641) +++ head/lang/julia11/Makefile (revision 524642) @@ -1,188 +1,188 @@ # Created by: Iblis Lin # $FreeBSD$ PORTNAME= julia PORTVERSION= 1.1.1 -PORTREVISION= 1 +PORTREVISION= 2 DISTVERSIONSUFFIX= -full CATEGORIES= lang math MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/ PKGNAMESUFFIX= 11 MAINTAINER= iblis@hs.ntnu.edu.tw COMMENT= Julia Language: A fresh approach to technical computing LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.md ONLY_FOR_ARCHS= amd64 i386 LIB_DEPENDS= libcurl.so:ftp/curl \ libgit2.so:devel/libgit2 \ libgmp.so:math/gmp \ libmbedtls.so:security/mbedtls \ libmpfr.so:math/mpfr \ libpcre2-8.so:devel/pcre2 \ libssh2.so:security/libssh2 \ libutf8proc.so:textproc/utf8proc EXTRACT_DEPENDS=gmake:devel/gmake BUILD_DEPENDS= patchelf:sysutils/patchelf \ pcre2-config:devel/pcre2 \ cmake:devel/cmake USES= gmake compiler:c++11-lib fortran python:2.7,build perl5 \ shebangfix USE_LDCONFIG= yes DESCR= ${.CURDIR}/../julia/pkg-descr SHEBANG_GLOB= *.sh WRKSRC= ${WRKDIR}/julia-${PORTVERSION} INSTALLDIR= julia/${PORTNAME}${PKGNAMESUFFIX} MANDIRS+= ${PREFIX}/${INSTALLDIR}/man ALL_TARGET= default INSTALL_TARGET= install TEST_TARGET= test PLIST_SUB= VERSION="${PORTVERSION:R}" \ JULIA="${INSTALLDIR}" CXXFLAGS+= -stdlib=libc++ -std=c++11 MAKE_ARGS+= prefix=${PREFIX}/${INSTALLDIR} \ JCXXFLAGS="${CXXFLAGS}" \ FORCE_ASSERTIONS=${FORCE_ASSERTIONS} \ USE_GPL_LIBS=${USE_GPL_LIBS} \ USE_SYSTEM_CURL=1 \ USE_SYSTEM_GMP=1 \ USE_SYSTEM_LAPACK=1 \ USE_SYSTEM_LIBGIT2=1 \ USE_SYSTEM_LIBSSH2=1 \ USE_SYSTEM_LIBUV=0 \ USE_SYSTEM_MBEDTLS=1 \ USE_SYSTEM_MPFR=1 \ USE_SYSTEM_PATCHELF=1 \ USE_SYSTEM_PCRE=1 \ USE_SYSTEM_UTF8PROC=1 \ NO_GIT=1 OPTIONS_DEFINE= DEBUG DOCS GPL_LIBS DESKTOP NATIVE OPTIONS_DEFAULT= OPENLIBM OPTIONS_GROUP= PRIVATE OPTIONS_GROUP_PRIVATE= OPENBLAS OPTIONS_SINGLE= LIBM OPTIONS_SINGLE_LIBM= SYSLIBM OPENLIBM OPTIONS_SUB= yes PRIVATE_DESC= Build self-shipped private depends LIBM_DESC= Math library implementation DEBUG_VARS= FORCE_ASSERTIONS=1 \ ALL_TARGET=all DEBUG_MAKE_ARGS= BUNDLE_DEBUG_LIBS=1 DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}${PKGNAMESUFFIX} PORTDOCS= html DOCS_VARS= INSTALL_TARGET+=install-docs GPL_LIBS_DESC= Build with GPL lib: SUITESPARSE GPL_LIBS_MAKE_ARGS= USE_SYSTEM_SUITESPARSE=0 GPL_LIBS_VARS= USE_GPL_LIBS=1 DESKTOP_DESC= Install icon, .desktop and appdata files DESKTOP_USES= gnome DESKTOP_VARS= INSTALL_TARGET+=install-desktop \ INSTALLS_ICONS=yes SYSLIBM_DESC= Build with system libm SYSLIBM_MAKE_ARGS= USE_SYSTEM_LIBM=1 OPENLIBM_DESC= Build with OpenLibm (math/openlibm) OPENLIBM_MAKE_ARGS= USE_SYSTEM_OPENLIBM=1 OPENLIBM_LIB_DEPENDS= libopenlibm.so:math/openlibm OPENBLAS_DESC= Private OpenBLAS v0.3.3\ (ports tree: v${:!${MAKE} -C ${PORTSDIR}/math/openblas -V PORTVERSION!}) OPENBLAS_MAKE_ARGS= USE_SYSTEM_BLAS=0 OPENBLAS_DYNAMIC_ARCH=1 OPENBLAS_MAKE_ARGS_OFF= USE_SYSTEM_BLAS=1 OPENBLAS_LIB_DEPENDS_OFF= libopenblas.so:math/openblas .include NATIVE_DESC= Build with native CPU JIT tuning .if ${PORT_OPTIONS:MNATIVE} MAKE_ARGS+= JULIA_CPU_TARGET=native .else .if ${ARCH} == "amd64" MAKE_ARGS+= JULIA_CPU_TARGET=x86-64 .elif ${ARCH} == "i386" MAKE_ARGS+= JULIA_CPU_TARGET=pentium4 .else MAKE_ARGS+= JULIA_CPU_TARGET=generic .endif .endif # .if ${PORT_OPTIONS:MNATIVE} # OPENBLAS plist .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "amd64" PLIST_SUB+= OPENBLAS64="64_" .else PLIST_SUB+= OPENBLAS64="" .endif .endif # .if ${PORT_OPTIONS:MOPENBLAS} .if ${ARCH} == "i386" EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-ui_Makefile .endif post-extract: ${MAKE_CMD} -C ${WRKSRC}/deps extract ${MAKE_CMD} -C ${WRKSRC}/stdlib install post-patch: echo "override TAGGED_RELEASE_BANNER=\"FreeBSD port lang/${PORTNAME}${PKGNAMESUFFIX} build\"" >> ${WRKSRC}/Make.user # unset ARCH for auto-detection # Julia build script uses the name x86_86/x86, which are different from ports framework echo "ARCH=" >> ${WRKSRC}/Make.user post-patch-OPENBLAS-on: ${CP} ${FILESDIR}/extra-patch-openblas-fix-arch.patch ${WRKSRC}/deps/patches/openblas-fix-arch.patch post-patch-OPENBLAS-off: echo "LIBBLAS= -lopenblas -L${LOCALBASE}/lib" >> ${WRKSRC}/Make.user echo "LIBBLASNAME=libopenblas" >> ${WRKSRC}/Make.user echo 'LIBLAPACK= $$(LIBBLAS)' >> ${WRKSRC}/Make.user echo 'LIBLAPACKNAME= $$(LIBBLASNAME)' >> ${WRKSRC}/Make.user post-configure-OPENBLAS-off: ${CC} ${CFLAGS} -lopenblas ${LDFLAGS} -o ${WRKSRC}/check_openblas \ ${FILESDIR}/check_openblas.c ${WRKSRC}/check_openblas && ( \ echo "USE_BLAS64=1" >> ${WRKSRC}/Make.user \ ) || ( \ echo "USE_BLAS64=0" >> ${WRKSRC}/Make.user \ ) post-install: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX} ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/man/man1/julia.1 ${STAGEDIR}${PREFIX}/man/man1/${PORTNAME}${PKGNAMESUFFIX}.1 # clean up for Pkg3.jl .for file in .codecov.yml .travis.yml appveyor.yml bors.toml .gitignore source-extracted ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/${file} ${RM} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/julia/stdlib/v${PORTVERSION:R}/Pkg/ext/TOML/${file} .endfor post-install-DEBUG-on: ${RLN} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/bin/julia-debug ${STAGEDIR}${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}-debug post-install-DOCS-on: ${MV} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc/julia ${STAGEDIR}${DOCSDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc post-install-DOCS-off: # remove empty dir ${RM} -r ${STAGEDIR}${PREFIX}/${INSTALLDIR}/share/doc .include Index: head/mail/rspamd/Makefile =================================================================== --- head/mail/rspamd/Makefile (revision 524641) +++ head/mail/rspamd/Makefile (revision 524642) @@ -1,95 +1,96 @@ # $FreeBSD$ PORTNAME= rspamd PORTVERSION= 2.2 +PORTREVISION= 1 CATEGORIES= mail MAINTAINER= vsevolod@FreeBSD.org COMMENT= Fast spam filtering system LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.md LIB_DEPENDS= libpcre.so:devel/pcre \ libicui18n.so:devel/icu \ libsodium.so:security/libsodium BUILD_DEPENDS= ragel:devel/ragel RUN_DEPENDS= ca_root_nss>=3.*:security/ca_root_nss USES= cmake compiler:c11 gnome perl5 pkgconfig \ sqlite ssl USE_LDCONFIG= yes USE_PERL5= build run USE_GNOME= glib20 CONFLICTS_INSTALL= rspamd-devel USERS= rspamd GROUPS= rspamd OPTIONS_DEFINE= BLAS CGP GPERF LUAJIT OPTIONS_DEFINE_amd64= HYPERSCAN OPTIONS_DEFAULT_amd64= LUAJIT OPTIONS_DEFAULT_armv7= LUAJIT OPTIONS_DEFAULT_i386= LUAJIT OPTIONS_DEFAULT_powerpc= LUAJIT OPTIONS_SUB= yes BLAS_DESC= Use OpenBLAS to accelerate KANN CGP_DESC= Install Communigate Pro(tm) helper GPERF_DESC= Google perf-tools profiling HYPERSCAN_DESC= Use hyperscan optimizations (amd64 only) LUAJIT_DESC= Use LuaJIT instead of standard Lua SUB_FILES= pkg-message rspamd.newsyslog.conf.sample PLIST_SUB+= ETCDIR=etc/rspamd \ RSPAMDVERSION=${PORTVERSION} CMAKE_ARGS+= -DCONFDIR=${PREFIX}/etc/rspamd \ -DLOGDIR=/var/log/rspamd \ -DDBDIR=/var/db/rspamd \ -DRUNDIR=/var/run/rspamd \ -DMANDIR=${MANPREFIX}/man \ -DCMAKE_INSTALL_PREFIX=${PREFIX} \ -DBUILD_PORT=yes \ -DLIBDIR=${PREFIX}/lib/rspamd USE_GITHUB= yes USE_RC_SUBR= rspamd BLAS_CMAKE_ON= -DENABLE_BLAS=ON BLAS_USES= blaslapack:openblas GPERF_CMAKE_ON= -DENABLE_GPERF_TOOLS=ON GPERF_LIB_DEPENDS= libprofiler.so:devel/google-perftools HYPERSCAN_CMAKE_ON= -DENABLE_HYPERSCAN=ON HYPERSCAN_LIB_DEPENDS= libhs.so:devel/hyperscan LUAJIT_LIB_DEPENDS= libluajit-5.1.so:lang/luajit LUAJIT_USES_OFF= lua:51 CGP_RUN_DEPENDS+= \ p5-AnyEvent-HTTP>=0:www/p5-AnyEvent-HTTP \ p5-AnyEvent>=0:devel/p5-AnyEvent \ p5-EV>=0:devel/p5-EV \ p5-JSON-XS>=0:converters/p5-JSON-XS post-install: @${MKDIR} \ ${STAGEDIR}/var/log/rspamd \ ${STAGEDIR}/var/db/rspamd \ ${STAGEDIR}/var/run/rspamd ${RM} ${STAGEDIR}/${ETCDIR}/rspamd.conf.sample # Linux specific ${RM} ${STAGEDIR}/${ETCDIR}/rspamd.systemd.conf ${RM} ${STAGEDIR}/${ETCDIR}/rspamd.sysvinit.conf # No examples installed by the port ${RMDIR} ${STAGEDIR}/${EXAMPLESDIR} ${INSTALL_DATA} ${WRKDIR}/rspamd.newsyslog.conf.sample ${STAGEDIR}${ETCDIR} @${MKDIR} ${STAGEDIR}${PREFIX}/etc/newsyslog.conf.d ${LN} -s ${ETCDIR}/rspamd.newsyslog.conf ${STAGEDIR}${PREFIX}/etc/newsyslog.conf.d post-install-CGP-on: ${INSTALL_SCRIPT} ${WRKSRC}/utils/cgp_rspamd.pl ${STAGEDIR}${PREFIX}/bin/rspamd-cgp-helper .include Index: head/mail/rspamd-devel/Makefile =================================================================== --- head/mail/rspamd-devel/Makefile (revision 524641) +++ head/mail/rspamd-devel/Makefile (revision 524642) @@ -1,101 +1,102 @@ # $FreeBSD$ PORTNAME= rspamd PORTVERSION= 2.3.a1.20191120 +PORTREVISION= 1 CATEGORIES= mail PKGNAMESUFFIX= -devel MAINTAINER= vsevolod@FreeBSD.org COMMENT= Fast spam filtering system dev version LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.md LIB_DEPENDS= libpcre.so:devel/pcre \ libicui18n.so:devel/icu \ libsodium.so:security/libsodium BUILD_DEPENDS= ragel:devel/ragel RUN_DEPENDS= ca_root_nss>=3.*:security/ca_root_nss USES= cmake compiler:c11 gnome perl5 pkgconfig \ sqlite ssl USE_LDCONFIG= yes USE_PERL5= build run USE_GNOME= glib20 CONFLICTS_INSTALL= rspamd USERS= rspamd GROUPS= rspamd OPTIONS_DEFINE= BLAS CGP GPERF LUAJIT OPTIONS_DEFINE_amd64= HYPERSCAN OPTIONS_DEFAULT_amd64= LUAJIT OPTIONS_DEFAULT_armv7= LUAJIT OPTIONS_DEFAULT_i386= LUAJIT OPTIONS_DEFAULT_powerpc= LUAJIT OPTIONS_SUB= yes BLAS_DESC= Use OpenBLAS to accelerate KANN CGP_DESC= Install Communigate Pro(tm) helper GPERF_DESC= Google perf-tools profiling HYPERSCAN_DESC= Use hyperscan optimizations (amd64 only) LUAJIT_DESC= Use LuaJIT instead of standard Lua SUB_FILES= pkg-message rspamd.newsyslog.conf.sample PLIST_SUB+= ETCDIR=etc/rspamd \ RSPAMDVERSION=${PORTVERSION:C/^([^.]+\.[^.]+).*/\1/} CMAKE_ARGS+= -DCONFDIR=${PREFIX}/etc/rspamd \ -DLOGDIR=/var/log/rspamd \ -DDBDIR=/var/db/rspamd \ -DRUNDIR=/var/run/rspamd \ -DMANDIR=${MANPREFIX}/man \ -DCMAKE_INSTALL_PREFIX=${PREFIX} \ -DBUILD_PORT=yes \ -DLIBDIR=${PREFIX}/lib/rspamd \ -DDEBUG=ON \ -DGIT_ID=${GH_TAGNAME} USE_GITHUB= yes GH_TAGNAME= b30c5df DEBUG_FLAGS= -g -O0 WITH_DEBUG= yes USE_RC_SUBR= rspamd BLAS_CMAKE_ON= -DENABLE_BLAS=ON BLAS_USES= blaslapack:openblas GPERF_CMAKE_ON= -DENABLE_GPERF_TOOLS=ON GPERF_LIB_DEPENDS= libprofiler.so:devel/google-perftools HYPERSCAN_CMAKE_ON= -DENABLE_HYPERSCAN=ON HYPERSCAN_LIB_DEPENDS= libhs.so:devel/hyperscan LUAJIT_LIB_DEPENDS= libluajit-5.1.so:lang/luajit LUAJIT_USES_OFF= lua:51 CGP_RUN_DEPENDS+= \ p5-AnyEvent-HTTP>=0:www/p5-AnyEvent-HTTP \ p5-AnyEvent>=0:devel/p5-AnyEvent \ p5-EV>=0:devel/p5-EV \ p5-JSON-XS>=0:converters/p5-JSON-XS post-install: @${MKDIR} \ ${STAGEDIR}/var/log/rspamd \ ${STAGEDIR}/var/db/rspamd \ ${STAGEDIR}/var/run/rspamd ${RM} ${STAGEDIR}/${ETCDIR}/rspamd.conf.sample # Linux specific ${RM} ${STAGEDIR}/${ETCDIR}/rspamd.systemd.conf ${RM} ${STAGEDIR}/${ETCDIR}/rspamd.sysvinit.conf # No examples installed by the port ${RMDIR} ${STAGEDIR}/${EXAMPLESDIR} ${INSTALL_DATA} ${WRKDIR}/rspamd.newsyslog.conf.sample ${STAGEDIR}${ETCDIR} @${MKDIR} ${STAGEDIR}${PREFIX}/etc/newsyslog.conf.d ${LN} -s ${ETCDIR}/rspamd.newsyslog.conf ${STAGEDIR}${PREFIX}/etc/newsyslog.conf.d post-install-CGP-on: ${INSTALL_SCRIPT} ${WRKSRC}/utils/cgp_rspamd.pl ${STAGEDIR}${PREFIX}/bin/rspamd-cgp-helper .include Index: head/math/R/Makefile =================================================================== --- head/math/R/Makefile (revision 524641) +++ head/math/R/Makefile (revision 524642) @@ -1,167 +1,168 @@ # Created by: Maurice Castro # $FreeBSD$ PORTNAME= R DISTVERSION= 3.6.2 +PORTREVISION= 1 CATEGORIES= math lang MASTER_SITES= CRAN/src/base/R-${PORTVERSION:C|\..*||} MAINTAINER= jrm@FreeBSD.org COMMENT= Language for statistical computing and graphics LICENSE= GPLv2 ONLY_FOR_ARCHS= aarch64 amd64 armv6 armv7 i386 powerpc64 BUILD_DEPENDS= texi2any:print/texinfo LIB_DEPENDS= libcurl.so:ftp/curl \ libpcre.so:devel/pcre RUN_DEPENDS= gmake:devel/gmake # R packages may require GNU make # possible TODO # - Use --with-recommended-packages=no by default # - Add an option for recommended packages # - Create ports for each of the recommended packages # - Create a meta-port for the recommended packages USES= compiler:c++11-lang gmake iconv libtool localbase pathfix perl5 \ readline:port USE_LDCONFIG= ${PREFIX}/lib/R/lib USE_PERL5= build GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-java \ --enable-R-shlib \ --with-readline \ rdocdir=${DOCSDIR} INSTALL_TARGET= install-strip PLIST_SUB= LIBVER=${_LIBVER} OPTIONS_DEFINE= ICU INFO LDOUBLE LETTER MEMPROF NLS RPROF X11 OPTIONS_DEFINE_amd64= FLANG OPENMP OPTIONS_DEFINE_i386= OPENMP OPTIONS_DEFAULT= CAIROPANGO GHOSTSCRIPT ICU INFO JPEG LDOUBLE PNG RBLAS \ RPROF TCLTK TIFF X11 OPTIONS_DEFAULT_amd64= OPENMP OPTIONS_DEFAULT_i386= OPENMP OPTIONS_GROUP= NEEDX11 OPTIONS_GROUP_NEEDX11= CAIROPANGO GHOSTSCRIPT JPEG PNG TCLTK TEXDOCS TIFF OPTIONS_SINGLE= BLAS OPTIONS_SINGLE_BLAS= ATLAS NETLIB OPENBLAS RBLAS OPTIONS_SUB= YES ATLAS_DESC= ATLAS BLAS implementation CAIROPANGO_DESC= Cairo graphics device and Pango multi-language text FLANG_DESC= Use experimental flang instead of default Fortran compiler GHOSTSCRIPT_DESC= Graphics device for bitmap files via Ghostscript JPEG_DESC= JPEG graphics device LDOUBLE_DESC= Long double data type LETTER_DESC= US letter paper MEMPROF_DESC= Memory profiling via Rprofmem() and tracemem() NEEDX11_DESC= Require X11 NETLIB_DESC= Netlib BLAS implementation OPENBLAS_DESC= OpenBLAS BLAS implementation PNG_DESC= PNG graphics device RBLAS_DESC= Use R-bundled BLAS implementation RPROF_DESC= R profiling via Rprof() TEXDOCS_DESC= Build/Install TeX-dependent documentation files X11_DESC= X11 graphics device ATLAS_USES= blaslapack:atlas ATLAS_CONFIGURE_ON= --disable-BLAS-shlib CAIROPANGO_IMPLIES= X11 CAIROPANGO_USES= gettext gnome jpeg pkgconfig CAIROPANGO_USE= GNOME=cairo,pango CAIROPANGO_CONFIGURE_WITH= cairo FLANG_PREVENTS= ATLAS NETLIB OPENBLAS FLANG_LIB_DEPENDS= libpgmath.so:math/libpgmath FLANG_USES= fortran:flang GHOSTSCRIPT_IMPLIES= X11 GHOSTSCRIPT_USES= ghostscript ICU_LIB_DEPENDS= libicui18n.so:devel/icu ICU_CONFIGURE_WITH= ICU INFO_INSTALL_TARGET= install-info INFO_INFO= R-admin R-data R-exts R-FAQ R-intro R-ints \ R-lang JPEG_IMPLIES= X11 JPEG_USES= jpeg pkgconfig JPEG_CONFIGURE_WITH= jpeglib JPEG_CONFIGURE_ENV= r_cv_header_jpeglib_h=yes LDOUBLE_CONFIGURE_ENABLE= long-double LETTER_CONFIGURE_ENV= R_PAPERSIZE=letter MEMPROF_CONFIGURE_ENABLE= memory-profiling NETLIB_USES= blaslapack:netlib NETLIB_CONFIGURE_ON= --disable-BLAS-shlib NLS_USES= gettext NLS_CONFIGURE_OFF= --disable-nls OPENBLAS_USES= blaslapack:openblas OPENBLAS_CONFIGURE_ON= --disable-BLAS-shlib OPENMP_CONFIGURE_ENABLE= openmp PNG_IMPLIES= X11 PNG_LIB_DEPENDS= libpng.so:graphics/png PNG_CONFIGURE_WITH= libpng RBLAS_CONFIGURE_OFF= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \ --with-lapack="${LAPACKLIB}" RBLAS_CONFIGURE_ON= --enable-BLAS-shlib \ --without-blas \ --without-lapack RBLAS_EXTRA_PATCHES= ${PATCHDIR}/extra-patch-src_extra_blas_Makefile.in \ ${PATCHDIR}/extra-patch-src_modules_lapack_Makefile.in RPROF_CONFIGURE_ENABLE= R-profiling TCLTK_IMPLIES= X11 TCLTK_USES= tcl tk TCLTK_CONFIGURE_WITH= tcltk TEXDOCS_USE= TEX=dvipsk:build,kpathsea:build,pdftex:build .for i in KPSEWHICH MAKEINDEX PDFLATEX PDFTEX TEX TEXI2DVI TEXDOCS_CONFIGURE_ENV_OFF+= ac_cv_path_${i}="" .endfor TEXDOCS_INSTALL_TARGET= install-pdf TIFF_IMPLIES= X11 TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff TIFF_CONFIGURE_WITH= libtiff X11_USES= xorg X11_USE= XORG=ice,sm,x11,xext,xmu,xscrnsaver,xt X11_CONFIGURE_WITH= x _LIBVER= ${PORTVERSION:R} .include # libomp is provided by # - LLVM, which gets pulled in with FLANG # - gcc # # So, *must* only depend on devel/openmp when # - the OPENMP knob is on # - FLANG is off (guaranteed to be off for all archs except amd64) # - clang is the C compiler. # # But, we cannot modify LIB_DEPENDS after CHOSEN_COMPILER_TYPE is defined, so # for now, limit the OPENMP knob for i386 and amd64 where clang is the default # compiler. # # This will be moot after 12.1 when openmp will be in base. .if ! ${PORT_OPTIONS:MFLANG} USES+= fortran .if ${PORT_OPTIONS:MOPENMP} LIB_DEPENDS+= libomp.so:devel/openmp .endif .endif post-patch: @${REINPLACE_CMD} -e "s|/usr/local|${LOCALBASE}|g" ${WRKSRC}/configure @${REINPLACE_CMD} "s|%%LIBVER%%|${_LIBVER}|" \ ${WRKSRC}/src/main/Makefile.in \ ${WRKSRC}/src/extra/blas/Makefile.in \ ${WRKSRC}/src/modules/lapack/Makefile.in post-install-RBLAS-off: @${REINPLACE_CMD} -e "s| -lR| -lR ${BLASLIB}|" \ ${STAGEDIR}${PREFIX}/libdata/pkgconfig/libR.pc post-install-RBLAS-on: @${REINPLACE_CMD} -e "s| -lR| -lR -lRblas|" \ ${STAGEDIR}${PREFIX}/libdata/pkgconfig/libR.pc .include Index: head/math/adept/Makefile =================================================================== --- head/math/adept/Makefile (revision 524641) +++ head/math/adept/Makefile (revision 524642) @@ -1,34 +1,34 @@ # $FreeBSD$ PORTNAME= adept DISTVERSION= 2.0.5 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math MASTER_SITES= http://www.met.reading.ac.uk/clouds/adept/ MAINTAINER= yuri@FreeBSD.org COMMENT= Combined array and automatic differentiation library in C++ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/COPYING USES= autoreconf gmake fortran blaslapack:openblas libtool GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-static USE_LDCONFIG= yes INSTALL_TARGET= install-strip OPTIONS_DEFINE= PDFTEXDOCS PDFTEXDOCS_DESC= Build and install PDF documentation from LaTeX sources OPTIONS_SUB= yes PDFTEXDOCS_USE= TEX=pdftex:build,dvipsk:build post-build-PDFTEXDOCS-on: @cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} post-install-PDFTEXDOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/*.pdf ${STAGEDIR}${DOCSDIR} .include Index: head/math/ambit/Makefile =================================================================== --- head/math/ambit/Makefile (revision 524641) +++ head/math/ambit/Makefile (revision 524642) @@ -1,29 +1,30 @@ # $FreeBSD$ PORTNAME= ambit DISTVERSIONPREFIX= v DISTVERSION= 0.4 +PORTREVISION= 1 CATEGORIES= math PKGNAMESUFFIX= -tensor # avoid clash with shells/ambit MAINTAINER= yuri@FreeBSD.org COMMENT= C++ library for tensor product calculations LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libomp.so:devel/openmp \ libopenblas.so:math/openblas \ libsz.so:science/szip USES= cmake compiler:c++11-lang USE_GITHUB= yes GH_ACCOUNT= jturney # some declared cmake options do nothing: see https://github.com/jturney/ambit/issues/25 and the patch CMAKE_ARGS+= -DSHARED_ONLY:BOOL=ON CMAKE_ARGS+= -DENABLE_OPENMP:BOOL=ON CMAKE_ARGS+= -DENABLE_TESTS:BOOL=OFF # https://github.com/jturney/ambit/issues/24 .include Index: head/math/armadillo/Makefile =================================================================== --- head/math/armadillo/Makefile (revision 524641) +++ head/math/armadillo/Makefile (revision 524642) @@ -1,29 +1,29 @@ # $FreeBSD$ PORTNAME= armadillo PORTVERSION= 9.600.4 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math MASTER_SITES= SF/arma MAINTAINER= danilo@FreeBSD.org COMMENT= C++ linear algebra library LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt BROKEN_powerpc64= Does not build LIB_DEPENDS= libboost_date_time.so:devel/boost-libs \ libopenblas.so:math/openblas \ libarpack.so:math/arpack-ng \ libhdf5.so:science/hdf5 \ libsuperlu.so:math/superlu \ libsz.so:science/szip USES= blaslapack cmake compiler:c++11-lang pkgconfig tar:xz USE_LDCONFIG= yes CMAKE_ARGS+= -DPKG_CONFIG_DIR=${LOCALBASE}/libdata/pkgconfig/ .include Index: head/math/blaze/Makefile =================================================================== --- head/math/blaze/Makefile (revision 524641) +++ head/math/blaze/Makefile (revision 524642) @@ -1,28 +1,28 @@ # $FreeBSD$ PORTNAME= blaze DISTVERSION= 3.5 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/downloads/ MAINTAINER= yuri@FreeBSD.org COMMENT= C++ math library for dense and sparse arithmetic LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ openblas>0:math/openblas \ openmp>0:devel/openmp RUN_DEPENDS= boost-libs>0:devel/boost-libs \ openblas>0:math/openblas \ openmp>0:devel/openmp USES= cmake compiler:c++14-lang fortran localbase:ldflags NO_ARCH= yes BB_ACCOUNT= ${PORTNAME}-lib BB_PROJECT= ${PORTNAME} .include Index: head/math/blazeiterative/Makefile =================================================================== --- head/math/blazeiterative/Makefile (revision 524641) +++ head/math/blazeiterative/Makefile (revision 524642) @@ -1,26 +1,26 @@ # $FreeBSD$ PORTNAME= blazeiterative PORTVERSION= g20180409 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Set of iterative linear system solvers for use with the Blaze library #LICENSE= https://github.com/tjolsen/BlazeIterative/issues/9 BUILD_DEPENDS= blaze>0:math/blaze \ boost-libs>0:devel/boost-libs \ openblas>0:math/openblas \ openmp>0:devel/openmp RUN_DEPENDS= blaze>0:math/blaze USES= cmake compiler:c++14-lang fortran localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= tjolsen GH_PROJECT= BlazeIterative GH_TAGNAME= e9f24b3 NO_ARCH= yes .include Index: head/math/blocksolve95/Makefile =================================================================== --- head/math/blocksolve95/Makefile (revision 524641) +++ head/math/blocksolve95/Makefile (revision 524642) @@ -1,78 +1,78 @@ # Created by: Thierry Thomas # $FreeBSD$ PORTNAME= blocksolve95 PORTVERSION= 3.0 -PORTREVISION= 25 +PORTREVISION= 26 CATEGORIES= math parallel MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/BlockSolve95/ \ http://ftp.mcs.anl.gov/pub/BlockSolve95/ DISTNAME= BlockSolve95 DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Software for the efficient solution of large, sparse linear systems LICENSE= AS-IS LICENSE_NAME= AS-IS LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libf2c.so:lang/f2c \ libmpich.so:net/mpich USES= fortran gmake tar:Z OPTIONS_DEFINE= DOCS EXAMPLES OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= REFERENCE ATLAS OPTIONS_DEFAULT= REFERENCE REFERENCE_DESC= Blas / Lapack REFERENCE_USES= blaslapack:netlib ATLAS_DESC= ATLAS ATLAS_USES= blaslapack:atlas MAKEFILE= makefile MAKE_ARGS= GMAKE=${MAKE_CMD} PETSC_ARCH=${PETSC_ARCH} BOPT=${BOPT} \ BLAS_LIB="${BLASLIB}" LAPACK_LIB="-L${LOCALBASE}/lib ${LAPACKLIB}" MPIDIR= ${LOCALBASE} PETSC_ARCH= freebsd BOPT?= O FFLAGS+= -O2 INCLUDES= BMmsg.h BSdepend.h BSlog.h BSmy_blas.h BSprivate.h BSsparse.h PORTDOCS= manual.ps do-install: ${INSTALL_DATA} ${WRKSRC}/lib/lib${BOPT}/${PETSC_ARCH}/libBS95.a \ ${STAGEDIR}${PREFIX}/lib ${INSTALL_DATA} ${INCLUDES:S|^|${WRKSRC}/include/|} ${STAGEDIR}${PREFIX}/include ${INSTALL_MAN} ${WRKSRC}/doc/man/man3/* ${STAGEDIR}${MANPREFIX}/man/man3 do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/doc/manual/|} ${STAGEDIR}${DOCSDIR} do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${INSTALL_DATA} ${WRKSRC}/examples/* ${STAGEDIR}${EXAMPLESDIR} @${RM} ${STAGEDIR}${EXAMPLESDIR}/makefile.orig .if defined(MAINTAINER_MODE) do-test: . if !exists(${HOME}/.mpd.conf) @${ECHO_CMD} "MPD_SECRETWORD=change_on_install" > ${HOME}/.mpd.conf ${CHMOD} go-r ${HOME}/.mpd.conf @${ECHO_MSG} "${HOME}/.mpd.conf has been generated - please change the secret word!" . endif ${LOCALBASE}/bin/mpd & (cd ${BUILD_WRKSRC}/examples && \ ${SETENV} ${MAKE_ENV:C|HOME=|wHOME=|} ${MAKE_CMD} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} bsrunexamples clean) ${LOCALBASE}/bin/mpdallexit .endif .include Index: head/math/bonmin/Makefile =================================================================== --- head/math/bonmin/Makefile (revision 524641) +++ head/math/bonmin/Makefile (revision 524642) @@ -1,29 +1,30 @@ # $FreeBSD$ PORTNAME= bonmin DISTVERSIONPREFIX= releases/ DISTVERSION= 1.8.7 +PORTREVISION= 1 CATEGORIES= math PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= Basic Open-source Nonlinear Mixed INteger programming LICENSE= EPL LICENSE_FILE= ${WRKSRC}/Bonmin/LICENSE LIB_DEPENDS= libCbc.so:math/coinmp \ libipopt.so:math/ipopt USES= blaslapack:netlib gmake libtool pkgconfig GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= coin-or GH_PROJECT= Bonmin USE_LDCONFIG= yes INSTALL_TARGET= install-strip TEST_TARGET= test .include Index: head/math/casadi/Makefile =================================================================== --- head/math/casadi/Makefile (revision 524641) +++ head/math/casadi/Makefile (revision 524642) @@ -1,70 +1,71 @@ # $FreeBSD$ PORTNAME= casadi DISTVERSION= 3.5.1 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Symbolic framework for numeric optimization LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt USES= cmake compiler:c++11-lang pkgconfig USE_GITHUB= yes USE_LDCONFIG= yes CFLAGS+= -fPIC CXXFLAGS+= -fPIC CMAKE_OFF= WITH_DEEPBIND WITH_BUILD_BLASFEO # cmake-3.16: disable build of examples (they are not installed anyways), # and fail due to not setting up the linker environment properly: CMAKE_OFF+= WITH_EXAMPLES OPTIONS_DEFINE= BLASFEO BONMIN CLANG IPOPT LAPACK QPOASES OPTIONS_DEFAULT= BLASFEO BONMIN IPOPT LAPACK QPOASES OPTIONS_SUB= yes BLASFEO_DESC= Build with BLASFEO BLASFEO_CMAKE_BOOL= WITH_BLASFEO BLASFEO_BUILD_DEPENDS= blasfeo>0:math/blasfeo BONMIN_DESC= Build with Bonmin BONMIN_CMAKE_BOOL= WITH_BONMIN BONMIN_USES= blaslapack:netlib fortran BONMIN_LIB_DEPENDS= libbonmin.so:math/bonmin \ libCbcSolver.so:math/coinmp \ libipopt.so:math/ipopt CLANG_DESC= Build with clang for JIT CLANG_CMAKE_BOOL= WITH_CLANG CLANG_BROKEN= Fails to find clang IPOPT_DESC= Build with IPopt IPOPT_CMAKE_BOOL= WITH_IPOPT IPOPT_USES= blaslapack:netlib fortran IPOPT_LIB_DEPENDS= libipopt.so:math/ipopt LAPACK_DESC= Build with LAPACK LAPACK_CMAKE_BOOL= WITH_LAPACK LAPACK_USES= blaslapack:openblas QPOASES_DESC= Build with qpOASES QPOASES_CMAKE_BOOL= WITH_QPOASES QPOASES_LIB_DEPENDS= libopenblas.so:math/openblas QPOASES_IMPLIES= LAPACK .include .if ${PORT_OPTIONS:MCLANG} # use clang from ports because cmake can't find base llvm for JIT BUILD_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} RUN_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} CPP= clang-cpp${LLVM_DEFAULT} CC= clang${LLVM_DEFAULT} CXX= clang++${LLVM_DEFAULT} .endif .include Index: head/math/ceres-solver/Makefile =================================================================== --- head/math/ceres-solver/Makefile (revision 524641) +++ head/math/ceres-solver/Makefile (revision 524642) @@ -1,120 +1,120 @@ # $FreeBSD$ PORTNAME= ceres-solver DISTVERSION= 1.14.0 -PORTREVISION= 15 +PORTREVISION= 16 CATEGORIES= math MAINTAINER= jbeich@FreeBSD.org COMMENT= Nonlinear least squares minimizer LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libglog.so:devel/glog RUN_DEPENDS:= ${BUILD_DEPENDS:Meigen*} USES= cmake compiler:${OPENMP}c++11-lib eigen:3 localbase shebangfix USE_GITHUB= yes USE_LDCONFIG= yes SHEBANG_FILES= examples/slam/pose_graph_*/plot_results.py \ scripts/make_docs.py CMAKE_ON= CXX11 BUILD_SHARED_LIBS CMAKE_OFF= BUILD_BENCHMARKS LDFLAGS+= -Wl,--as-needed # -lccolamd -lcholmod -lrt from suitesparse PLIST_SUB= VERSION=${DISTVERSION:C/rc.*//} EXAMPLESDIR= ${PREFIX}/share/examples/${PORTNAME:S/-solver//} DOCSDIR= ${PREFIX}/share/doc/${PORTNAME:S/-solver//} PORTDOCS= * PORTEXAMPLES= * OPTIONS_DEFINE= CUSTOM_BLAS EXAMPLES DOCS GFLAGS LAPACK SCHUR TEST OPTIONS_DEFAULT=CUSTOM_BLAS CXSPARSE OPENBLAS OPENMP SCHUR SUITESPARSE OPTIONS_RADIO= LAPACK THREADS OPTIONS_RADIO_LAPACK= ATLAS GOTOBLAS NETLIB OPENBLAS OPTIONS_RADIO_THREADS= OPENMP TBB OPTIONS_GROUP= SPARSE OPTIONS_GROUP_SPARSE= CXSPARSE EIGENSPARSE SUITESPARSE CUSTOM_BLAS_DESC= Handcoded BLAS routines instead of Eigen CUSTOM_BLAS_CMAKE_BOOL= CUSTOM_BLAS DOCS_BUILD_DEPENDS= sphinx-build:textproc/py-sphinx DOCS_USES= python:build DOCS_CMAKE_BOOL= BUILD_DOCUMENTATION EXAMPLES_CMAKE_BOOL= BUILD_EXAMPLES EXAMPLES_IMPLIES= GFLAGS GFLAGS_DESC= Google Flags support GFLAGS_LIB_DEPENDS= libgflags.so:devel/gflags GFLAGS_CMAKE_BOOL= GFLAGS OPENMP_USES= compiler:openmp OPENMP_CMAKE_BOOL= OPENMP .if !exists(/usr/include/omp.h) # XXX ports/199603 + ports/210337 OPENMP_VARS= OPENMP=gcc- .endif SCHUR_DESC= Fixed-size schur specializations SCHUR_CMAKE_BOOL= SCHUR_SPECIALIZATIONS TBB_DESC= Intel threading building blocks TBB_LIB_DEPENDS= libtbb.so:devel/tbb TBB_CMAKE_BOOL= TBB # XXX Unbundle googletest/googlemock TEST_CMAKE_BOOL= BUILD_TESTING TEST_TEST_TARGET= test TEST_IMPLIES= GFLAGS LAPACK_DESC= Linear Algebra PACKage LAPACK_CMAKE_BOOL= LAPACK # Avoid conflict with Ceres threading by using single-threaded BLAS library. # BLASLIB from USES=blaslapack cannot be used as it's multi-threaded. # https://github.com/xianyi/OpenBLAS/wiki/faq#multi-threaded ATLAS_USES= blaslapack:atlas ATLAS_CMAKE_ON= -DBLA_VENDOR:STRING="ATLAS" \ -DBLAS_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libcblas.so" \ -DLAPACK_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libalapack.so" ATLAS_IMPLIES= LAPACK GOTOBLAS_DESC= Goto blas implementation GOTOBLAS_USES= blaslapack:gotoblas GOTOBLAS_CMAKE_ON= -DBLA_VENDOR:STRING="Goto" GOTOBLAS_IMPLIES= LAPACK NETLIB_USES= blaslapack:netlib NETLIB_CMAKE_ON= -DBLA_VENDOR:STRING="Generic" NETLIB_IMPLIES= LAPACK OPENBLAS_USES= blaslapack:openblas OPENBLAS_CMAKE_ON= -DBLA_VENDOR:STRING="OpenBLAS" OPENBLAS_IMPLIES= LAPACK SPARSE_DESC= Sparse linear algebra library CXSPARSE_DESC= CXSparse support CXSPARSE_LIB_DEPENDS= libcxsparse.so:math/suitesparse CXSPARSE_CMAKE_ON= -DCXSPARSE_INCLUDE_DIR:PATH="${LOCALBASE}/include/suitesparse" CXSPARSE_CMAKE_BOOL= CXSPARSE EIGENSPARSE_DESC= Simplicial Cholesky factorization in Eigen EIGENSPARSE_CMAKE_BOOL= EIGENSPARSE EIGENSPARSE_VARS= LICENSE+=LGPL21+ LICENSE_COMB=multi \ LICENSE_FILE_BSD3CLAUSE="${LICENSE_FILE}" SUITESPARSE_DESC= SuiteSparse support SUITESPARSE_LIB_DEPENDS=libspqr.so:math/suitesparse SUITESPARSE_CMAKE_BOOL= SUITESPARSE post-patch-DOCS-on: @${REINPLACE_CMD} -e 's,python,${PYTHON_CMD:T},' \ ${WRKSRC}/docs/source/CMakeLists.txt pre-install-TEST-on: do-test post-install-EXAMPLES-on: # Copy examples (stripped), their source and sample data but not tests programs (cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) (cd ${WRKSRC} && ${COPYTREE_SHARE} data ${STAGEDIR}${EXAMPLESDIR}) (cd ${BUILD_WRKSRC} && ${COPYTREE_SHARE} bin ${STAGEDIR}${EXAMPLESDIR}) @${RM} -r ${STAGEDIR}${EXAMPLESDIR}/bin/*_test -@${STRIP_CMD} ${STAGEDIR}${EXAMPLESDIR}/bin/* # may fail for non-root .include Index: head/math/clp/Makefile =================================================================== --- head/math/clp/Makefile (revision 524641) +++ head/math/clp/Makefile (revision 524642) @@ -1,35 +1,36 @@ # Created by: Robin Schilham # $FreeBSD$ PORTNAME= Clp DISTVERSION= 1.17.3 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://www.coin-or.org/download/source/${PORTNAME}/ \ http://www.mavetju.org/download/adopted/ PKGNAMEPREFIX= coin-or- MAINTAINER= co9co9@gmail.com COMMENT= Linear Programming Solver LICENSE= EPL USES= blaslapack compiler:c++11-lang fortran libtool pathfix tar:tgz GNU_CONFIGURE= yes USE_LDCONFIG= yes INSTALL_TARGET= install-strip CONFIGURE_ARGS= --with-lapack-lib="${LAPACKLIB} -L${LOCALBASE}/lib" \ --with-blas-lib="${BLASLIB} -L${LOCALBASE}/lib" \ --datadir=${DATADIR} TEST_TARGET= unitTest TEST_WRKSRC= ${WRKSRC}/${PORTNAME} OPTIONS_DEFINE= DEBUG DOCS PORTDOCS= * CXXFLAGS+= -ffast-math DEBUG_CXXFLAGS= -fomit-frame-pointer .include Index: head/math/cminpack/Makefile =================================================================== --- head/math/cminpack/Makefile (revision 524641) +++ head/math/cminpack/Makefile (revision 524642) @@ -1,29 +1,29 @@ # $FreeBSD$ PORTNAME= cminpack PORTVERSION= 1.3.6 DISTVERSIONPREFIX= v -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= fernape@FreeBSD.org COMMENT= Solving nonlinear equations and nonlinear least squares problems LICENSE_FILE= ${WRKSRC}/CopyrightMINPACK.txt USES= blaslapack:openblas cmake localbase USE_GITHUB= yes GH_ACCOUNT= devernay CMAKE_ON= BUILD_SHARED_LIBS CMAKE_OFF= USE_BLAS OPTIONS_DEFINE= EXAMPLES post-install-EXAMPLES-on: ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/examples/ && ${COPYTREE_SHARE} "*.[ch] testdata" \ ${STAGEDIR}${EXAMPLESDIR}) .include Index: head/math/coinmp/Makefile =================================================================== --- head/math/coinmp/Makefile (revision 524641) +++ head/math/coinmp/Makefile (revision 524642) @@ -1,63 +1,63 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= CoinMP PORTVERSION= 1.8.4 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= http://www.coin-or.org/download/source/CoinMP/ MAINTAINER= cpm@FreeBSD.org COMMENT= Optimization library with support for COIN-OR CLP, CBC, and CGL LICENSE= CPL LICENSE_NAME= Common Public License, Version 1.0 LICENSE_FILE= ${WRKSRC}/CoinMP/LICENSE LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept # note: with ogdf only if build with COIN option CONFLICTS= clp-[0-9]* ogdf-[0-9]* GNU_CONFIGURE= yes USES= libtool pathfix pkgconfig tar:tgz USE_LDCONFIG= yes CXXFLAGS+= -ffast-math OPTIONS_DEFINE= DEBUG DOCS FORTRAN GLPK PARALLEL FORTRAN_DESC= Use BLAS/LAPACK with the Fortran interface GLPK_DESC= GNU Linear Programming Kit support PARALLEL_DESC= Enable CBC threads support PORTDOCS= * DEBUG_CXXFLAGS= -fomit-frame-pointer FORTRAN_USES= fortran blaslapack FORTRAN_CONFIGURE_ON= --with-lapack-lib="${LAPACKLIB} -L${LOCALBASE}/lib" \ --with-blas-lib="${BLASLIB} -L${LOCALBASE}/lib" GLPK_LIB_DEPENDS= libglpk.so:math/glpk GLPK_CONFIGURE_ON= --with-gmpl-incdir=${LOCALBASE}/include \ --with-gmpl-lib="-L${LOCALBASE}/lib -lglpk" GLPK_CONFIGURE_OFF= --disable-glpk-libcheck PARALLEL_CONFIGURE_ON= --enable-cbc-parallel INSTALL_TARGET= install-strip TEST_TARGET= unitTest TEST_WRKSRC= ${WRKSRC}/${PORTNAME} post-patch:: @${FIND} ${WRKSRC} -name Makefile.in | ${XARGS} ${REINPLACE_CMD} \ -e 's|$$(DESTDIR)$$(addlibsdir)|$$(addlibsdir)|g' \ -e 's|addlibs_DATA = examples/Makefile examples/example.c||g' \ -e 's|DocInstallDir = $$(datadir)/coin/doc/$$(PACKAGE_NAME)|DocInstallDir = $$(datadir)/doc/CoinMP/$$(PACKAGE_NAME)|' \ -e 's| $$(MAKE) $$(AM_MAKEFLAGS) install-data-hook||' @${FIND} ${WRKSRC} -name configure | ${XARGS} ${REINPLACE_CMD} \ -e 's|void exit (int)|void reserved (int)|g' ${REINPLACE_CMD} -e 's|datacoin_DATA = $$(EXAMPLE_FILES)|datacoin_DATA = |' \ -e 's|datacoindir = $$(datadir)/coin/Data/Sample|datacoindir = |' ${WRKSRC}/Data/Sample/Makefile.in ${REINPLACE_CMD} -e 's|addlibsdir = $$(DESTDIR)$$(datadir)/coin/doc/CoinMP|addlibsdir = |' ${WRKSRC}/CoinMP/Makefile.in .include Index: head/math/coinutils/Makefile =================================================================== --- head/math/coinutils/Makefile (revision 524641) +++ head/math/coinutils/Makefile (revision 524642) @@ -1,31 +1,32 @@ # $FreeBSD$ PORTNAME= CoinUtils DISTVERSION= 2.11.3 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/ PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= Utilities for COIN-OR project LICENSE= EPL LICENSE_FILE= ${WRKSRC}/CoinUtils/LICENSE BUILD_DEPENDS= coin-or-Data-Sample>0:math/coin-or-data-sample \ coin-or-Data-Netlib>0:math/coin-or-data-netlib LIB_DEPENDS= libopenblas.so:math/openblas RUN_DEPENDS:= ${BUILD_DEPENDS} USES= fortran gmake libtool localbase:ldflags pkgconfig zip GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-blas-lib="-lopenblas" --with-lapack-lib="-lopenblas" \ --with-sample-datadir="${LOCALBASE}/share/coin/Data/Sample" \ --with-netlib-datadir="${LOCALBASE}/share/coin/Data/Netlib" # doesn't link with the optional dependency glpk: https://github.com/coin-or/CoinUtils/issues/7 USE_LDCONFIG= yes post-install: @${RM} -r ${STAGEDIR}${PREFIX}/share/coin .include Index: head/math/couenne/Makefile =================================================================== --- head/math/couenne/Makefile (revision 524641) +++ head/math/couenne/Makefile (revision 524642) @@ -1,28 +1,29 @@ # $FreeBSD$ PORTNAME= couenne DISTVERSIONPREFIX= releases/ DISTVERSION= 0.5.7 +PORTREVISION= 1 CATEGORIES= math PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= Convex Over and Under Envelopes for NonliNear Estimation LICENSE= EPL LICENSE_FILE= ${WRKSRC}/Couenne/LICENSE LIB_DEPENDS= libbonmin.so:math/bonmin \ libCbc.so:math/coinmp \ libipopt.so:math/ipopt USES= blaslapack:netlib fortran gmake libtool pkgconfig GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= coin-or GH_PROJECT= Couenne USE_LDCONFIG= yes INSTALL_TARGET= install-strip .include Index: head/math/dbcsr/Makefile =================================================================== --- head/math/dbcsr/Makefile (revision 524641) +++ head/math/dbcsr/Makefile (revision 524642) @@ -1,48 +1,49 @@ # $FreeBSD$ PORTNAME= dbcsr DISTVERSIONPREFIX= v DISTVERSION= 2.0.1 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Distributed Block Compressed Sparse Row matrix library LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= fypp:devel/py-fypp@${PY_FLAVOR} USES= blaslapack:openblas cmake:noninja compiler:c++14-lang fortran \ python:build USE_GITHUB= yes GH_ACCOUNT= cp2k USE_LDCONFIG= yes LDFLAGS+= -lopenblas CMAKE_ON= BUILD_SHARED_LIBS CMAKE_ARGS= -DBLA_VENDOR:STRING="OpenBLAS" TEST_TARGET= test # tests hang: https://github.com/cp2k/dbcsr/issues/72 OPTIONS_DEFINE= MPI OPENMP C_API # libxsmm is supposed to be supported, but cmake build lacks the corresponding option: https://github.com/cp2k/dbcsr/issues/73 OPTIONS_DEFAULT= MPI OPENMP C_API OPTIONS_SUB= yes MPI_CMAKE_BOOL= USE_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi OPENMP_CMAKE_BOOL= USE_OPENMP OPENMP_LIB_DEPENDS= libomp.so:devel/openmp C_API_DESC= Build the C API library C_API_CMAKE_BOOL= WITH_C_API do-test: # tests are broken: https://github.com/cp2k/dbcsr/issues/150 @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DBUILD_TESTING:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include Index: head/math/deal.ii/Makefile =================================================================== --- head/math/deal.ii/Makefile (revision 524641) +++ head/math/deal.ii/Makefile (revision 524642) @@ -1,94 +1,94 @@ # $FreeBSD$ PORTNAME= deal.II DISTVERSIONPREFIX= v DISTVERSION= 9.1.1 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Finite element Differential Equations Analysis Library (DEAL) LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LICENSE.md BUILD_DEPENDS= ${LOCALBASE}/include/boost/config.hpp:devel/boost-libs LIB_DEPENDS= libhdf5.so:science/hdf5 \ libmetis.so:math/metis \ libtbb.so:devel/tbb USES= blaslapack:gotoblas cmake compiler:c++17-lang localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tl:S/.//} GH_PROJECT= ${PORTNAME:tl:S/.//} USE_LDCONFIG= yes CMAKE_OFF= DEAL_II_ALLOW_BUNDLED DEAL_II_COMPONENT_EXAMPLES \ DEAL_II_WITH_P4EST DEAL_II_WITH_TRILINOS DEAL_II_WITH_UMFPACK \ DEAL_II_WITH_NANOFLANN DEAL_II_WITH_MUPARSER DEAL_II_WITH_ASSIMP \ DEAL_II_WITH_HDF5 OPTIONS_DEFINE= ADOLC ARPACK GSL LAPACK MPI NETCDF OPENCASCADE PETSC SCALAPACK SLEPC SUNDIALS OPTIONS_DEFAULT= GSL LAPACK SUNDIALS ADOLC_DESC= Compile with ADOL-C ADOLC_CMAKE_BOOL= DEAL_II_WITH_ADOLC ADOLC_LIB_DEPENDS= libadolc.so:math/adol-c ADOLC_BROKEN= requires the development version: see https://github.com/dealii/dealii/issues/7293 ARPACK_DESC= Compile with Arpack and PArpack (only with MPI, LAPACK) ARPACK_CMAKE_BOOL= DEAL_II_WITH_ARPACK ARPACK_CMAKE_ON= -DARPACK_LINKER_FLAGS:STRING="${LDFLAGS}" ARPACK_BUILD_DEPENDS= arpack-ng>0:math/arpack-ng ARPACK_RUN_DEPENDS= arpack-ng>0:math/arpack-ng # itself doesn't link to arpack, but makes depending project link to it ARPACK_IMPLIES= LAPACK GSL_DESC= Compile with gsl GSL_CMAKE_BOOL= DEAL_II_WITH_GSL GSL_LIB_DEPENDS= libgsl.so:math/gsl LAPACK_DESC= Compile with LAPACK for matrix operations LAPACK_USES= fortran LAPACK_CMAKE_BOOL= DEAL_II_WITH_LAPACK LAPACK_CMAKE_ON= -DLAPACK_LINKER_FLAGS:STRING="${LDFLAGS}" LAPACK_LIB_DEPENDS= libopenblas.so:math/openblas MPI_USES= fortran MPI_CMAKE_BOOL= DEAL_II_WITH_MPI MPI_CMAKE_ON= -DMPI_LINKER_FLAGS:STRING="${LDFLAGS}" MPI_LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \ libmpi.so:net/openmpi MPI_BROKEN= Could not find any suitable mpi library! (need to investigate) NETCDF_DESC= Compile with Netcdf (only with MPI) NETCDF_CMAKE_BOOL= DEAL_II_WITH_NETCDF NETCDF_CMAKE_ON= -DNETCDF_INCLUDE_DIR:STRING=${LOCALBASE}/include -DNETCDF_CPLUSPLUS_LIBRARY:STRING=${LOCALBASE}/lib/libnetcdf_c++4.so NETCDF_BROKEN= see https://github.com/dealii/dealii/issues/7263 OPENCASCADE_DESC= Compile with OpenCascade OPENCASCADE_CMAKE_BOOL= DEAL_II_WITH_OPENCASCADE OPENCASCADE_CMAKE_ON= -DOPENCASCADE_INCLUDE_DIR:STRING=${LOCALBASE}/include/OpenCASCADE OPENCASCADE_LIB_DEPENDS= libTKernel.so:cad/opencascade PETSC_DESC= Compile with Petsc (only with MPI) PETSC_CMAKE_BOOL= DEAL_II_WITH_PETSC PETSC_LIB_DEPENDS= libpetsc.so:science/PETSc PETSC_BROKEN= see https://github.com/dealii/dealii/issues/7260 SCALAPACK_DESC= Compile with ScaLAPACK (only with MPI) SCALAPACK_CMAKE_BOOL= DEAL_II_WITH_SCALAPACK SCALAPACK_IMPLIES= MPI LAPACK SLEPC_DESC= Compile with SLEPC (only with PETSC) SLEPC_CMAKE_BOOL= DEAL_II_WITH_SLEPC SLEPC_LIB_DEPENDS= libslepc.so:math/slepc SLEPC_IMPLIES= PETSC SUNDIALS_DESC= Compile with SUNDIALS SUNDIALS_CMAKE_BOOL= DEAL_II_WITH_SUNDIALS SUNDIALS_LIB_DEPENDS= libsundials_arkode.so:math/sundials post-stage: @${RM} ${STAGEDIR}${PREFIX}/*.log .include Index: head/math/elpa/Makefile =================================================================== --- head/math/elpa/Makefile (revision 524641) +++ head/math/elpa/Makefile (revision 524642) @@ -1,50 +1,51 @@ # $FreeBSD$ PORTNAME= elpa DISTVERSION= 2019.05.002 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://elpa.mpcdf.mpg.de/html/Releases/${DISTVERSION}/ MAINTAINER= yuri@FreeBSD.org COMMENT= Eigenvalue soLver for Petaflop Applications LICENSE= GPLv3 LGPL3 LICENSE_COMB= dual LICENSE_FILE_GPLv3= ${WRKSRC}/COPYING/gpl.txt LICENSE_FILE_LGPL3= ${WRKSRC}/COPYING/lgpl.txt LIB_DEPENDS= libopenblas.so:math/openblas USES= compiler:c11 fortran gmake libtool localbase perl5 shebangfix SHEBANG_GLOB= *.pl GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-avx --disable-avx2 --disable-static USE_LDCONFIG= yes INSTALL_TARGET= install-strip BINARY_ALIAS= make=gmake gcc=gcc${GCC_DEFAULT} g++=g++${GCC_DEFAULT} # build fails with clang: recursively calls cc FCFLAGS+= -I${LOCALBASE}/include OPTIONS_DEFINE= OPENMP MPI DOCS OPTIONS_DEFINE_amd64= SSE OPTIONS_DEFAULT_amd64= SSE SSE_CFLAGS= -msse3 OPENMP_CONFIGURE_ENABLE= openmp MPI_CONFIGURE_WITH= mpi MPI_LIB_DEPENDS= libmpich.so:net/mpich \ libscalapack.so:math/scalapack PORTDOCS= * .include .if ${PORT_OPTIONS:NSSE} CONFIGURE_ARGS+= --disable-sse --disable-sse-assembly .endif post-install-DOCS-on: @cd ${STAGEDIR}${DOCSDIR} && ${RM} *gpl* COPYING LICENSE .include Index: head/math/g2o/Makefile =================================================================== --- head/math/g2o/Makefile (revision 524641) +++ head/math/g2o/Makefile (revision 524642) @@ -1,62 +1,63 @@ # $FreeBSD$ PORTNAME= g2o DISTVERSION= 20170730_git-239 +PORTREVISION= 1 DISTVERSIONSUFFIX= -ge7b5b7a CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= General framework for graph optimization LICENSE= LGPL3 GPLv3 LICENSE_COMB= dual LIB_DEPENDS= libcxsparse.so:math/suitesparse \ libQGLViewer-qt5.so:graphics/libQGLViewer \ libmetis.so:math/metis \ libopenblas.so:math/openblas USES= cmake compiler:c++11-lang gl eigen:3 blaslapack:netlib qt:5 USE_GITHUB= yes GH_ACCOUNT= RainerKuemmerle USE_GL= gl glu USE_QT= core gui opengl xml widgets buildtools_build qmake_build USE_LDCONFIG= yes CMAKE_OFF= DO_SSE_AUTODETECT OPTIONS_DEFINE= FAST_MATH OPTIONS_SINGLE= SIMD_${ARCH:tu} OPTIONS_SINGLE_SIMD_AMD64= NOSSE SSE2 SSE3 SSE41 SSE42 SSE4A OPTIONS_SINGLE_SIMD_I386= ${OPTIONS_SINGLE_SIMD_AMD64} OPTIONS_DEFAULT_amd64= SSE2 OPTIONS_DEFAULT_i386= SSE2 SIMD_AMD64_DESC= Use SSE SIMD optimizations SIMD_I386_DESC= ${SIMD_AMD64_DESC} FAST_MATH_DESC= Enable fast math operations NOSSE_DESC= Do not use SIMD optimization SSE2_DESC= SSE2 optimization SSE3_DESC= SSE3 optimization SSE41_DESC= SSE41 optimization SSE42_DESC= SSE42 optimization SSE4A_DESC= SSE4a optimization FAST_MATH_CMAKE_BOOL= G2O_FAST_MATH NOSSE_CMAKE_ON= -DDISABLE_SSE2:BOOL=ON -DDISABLE_SSE3:BOOL=ON -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE2_CMAKE_ON= -DDISABLE_SSE3:BOOL=ON -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE3_CMAKE_ON= -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE41_CMAKE_ON= -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON SSE42_CMAKE_ON= -DDISABLE_SSE4_A:BOOL=ON .include .if ${ARCH} != amd64 && ${ARCH} != i386 CMAKE_ARGS+= -DDISABLE_SSE2:BOOL=ON -DDISABLE_SSE3:BOOL=ON -DDISABLE_SSE4_1:BOOL=ON -DDISABLE_SSE4_2:BOOL=ON -DDISABLE_SSE4_A:BOOL=ON .endif post-patch: @${REINPLACE_CMD} -e 's|/usr/include|${LOCALBASE}/include|' \ ${WRKSRC}/cmake_modules/*.cmake .include Index: head/math/giacxcas/Makefile =================================================================== --- head/math/giacxcas/Makefile (revision 524641) +++ head/math/giacxcas/Makefile (revision 524642) @@ -1,120 +1,121 @@ # Created by: Frederic Han # $FreeBSD$ PORTNAME= giacxcas DISTVERSION= 1.5.0-69 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/:giac \ http://www-fourier.ujf-grenoble.fr/~parisse/giac/freebsd/ DISTFILES= giac_${DISTVERSION}${EXTRACT_SUFX}:giac \ CoCoALib-0.9950.tgz \ fltk-giac.tar.gz DIST_SUBDIR= ${PORTNAME} MAINTAINER= yuri@FreeBSD.org COMMENT= Computer algebra system LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= bash:shells/bash LIB_DEPENDS= libao.so:audio/libao \ libcurl.so:ftp/curl \ libfontconfig.so:x11-fonts/fontconfig \ libgsl.so:math/gsl \ libglpk.so:math/glpk \ libgmp.so:math/gmp \ libmpfr.so:math/mpfr \ libpari.so:math/pari \ libpng.so:graphics/png \ libsamplerate.so:audio/libsamplerate RUN_DEPENDS= xdg-open:devel/xdg-utils NO_CDROM= French documentation is for non-commercial use only USES= blaslapack desktop-file-utils fortran gettext gl gmake gnome jpeg \ libtool ncurses readline shebangfix xorg GNU_CONFIGURE= yes USE_GL= gl USE_XORG= x11 xcursor xext xft xi xinerama USE_TEX= latex:build dvipsk:build USE_LDCONFIG= yes # Warning: don't remove the USE_GCC without a runtime test *after* make install USE_GCC= yes CONFIGURE_ENV= ac_cv_lib_X11_main=yes \ ac_cv_lib_cocoa_main=yes \ ac_cv_lib_fltk_gl_main=yes \ ac_cv_lib_fltk_main=yes \ ac_cv_lib_fltk_images_main=yes \ ac_cv_lib_jpeg_main=yes SHEBANG_FILES= src/pgiac INSTALL_TARGET= install-strip INSTALLS_ICONS= yes CXXFLAGS+= -I${LOCALBASE}/include CPPFLAGS+= -I${COCOALIB-GIAC}/include \ -I${FLTKDEV-GIAC} \ -I${LOCALBASE}/include LDFLAGS+= -L${COCOALIB-GIAC}/lib \ -L${FLTKDEV-GIAC}/lib \ -L${LOCALBASE}/lib WRKSRC= ${WRKDIR}/giac-${DISTVERSION:C/-[0-9]*//} FLTKDEV-GIAC= ${WRKDIR}/fltk-1.3.0 COCOALIB-GIAC= ${WRKDIR}/CoCoALib-0.9950 DATADIR= ${PREFIX}/share/giac DOCSDIR= ${PREFIX}/share/doc/giac EXAMPLESDIR= ${PREFIX}/share/examples/giac INFO= giac_es giac_us OPTIONS_DEFINE= DOCS EXAMPLES #NB: built of giacxcas with USE_GCC and nlt is successfull if the ntl port is also # installed with USE_GCC CONFIGURE_ARGS+= --disable-ntl PORTDOCS= * PORTEXAMPLES= * post-extract: @${FIND} ${WRKSRC}/examples/Exemples -name "._*" -delete post-patch: @${GREP} -Rl --null /bin/bash ${COCOALIB-GIAC} | ${XARGS} -0 \ ${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' @${REINPLACE_CMD} -e '/^SUBDIR/s|examples||' \ ${WRKSRC}/Makefile.in @${REINPLACE_CMD} -e 's|/usr/bin|${LOCALBASE}/bin|' \ ${WRKSRC}/xcas.applications @${REINPLACE_CMD} -e 's|cp -f \*|$$(INSTALL_DATA) WARNINGS [a-z]*|' \ ${WRKSRC}/doc/el/*/Makefile.in @${REINPLACE_CMD} -e '/browser=/s|"mozilla"|"xdg-open"|' \ ${WRKSRC}/src/global.cc @${FIND} ${WRKSRC} -name "Makefile.in" | ${XARGS} \ ${REINPLACE_CMD} -e 's|$$(prefix)/share/giac/doc|$$(docdir)|' @${FIND} ${COCOALIB-GIAC} -name "Makefile" | ${XARGS} \ ${REINPLACE_CMD} -e \ 's|\($$(MAKE) \)-s |\1|; s|\([[:blank:]]\)@|\1|' @${REINPLACE_CMD} -e '/.SILENT:/s|^|#|' \ ${FLTKDEV-GIAC}/makeinclude.in pre-configure: @(cd ${COCOALIB-GIAC} && ${SETENV} ${CONFIGURE_ENV} ./configure \ --with-libgmp=${LOCALBASE}/lib/libgmp.a \ --with-cxx="${CXX}") @(cd ${FLTKDEV-GIAC} && ${SETENV} ${CONFIGURE_ENV} ./configure \ --prefix=${FLTKDEV-GIAC} \ CXX="${CXX}" CXXFLAGS="${CXXFLAGS}") pre-build: @cd ${COCOALIB-GIAC} && ${DO_MAKE_BUILD} \ CXXFLAGS_SPECIFIC="${CXXFLAGS}" library @cd ${FLTKDEV-GIAC}/src && ${DO_MAKE_BUILD} post-install-EXAMPLES-on: cd ${WRKSRC}/examples && ${COPYTREE_SHARE} "Exemples [a-z]*" \ ${STAGEDIR}${EXAMPLESDIR} .include Index: head/math/hmat-oss/Makefile =================================================================== --- head/math/hmat-oss/Makefile (revision 524641) +++ head/math/hmat-oss/Makefile (revision 524642) @@ -1,32 +1,32 @@ # $FreeBSD$ PORTNAME= hmat-oss DISTVERSION= 1.5.0-348 DISTVERSIONSUFFIX= -g76beaf3 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Hierarchical matrix C/C++ library LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.md LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake compiler:openmp USE_GITHUB= yes GH_ACCOUNT= jeromerobert USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so \ -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DBUILD_EXAMPLES:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${REINPLACE_CMD} "s|#define OPENBLAS_DISABLE_THREADS|\/\/&|" ${BUILD_WRKSRC}/config.h && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include Index: head/math/ipopt/Makefile =================================================================== --- head/math/ipopt/Makefile (revision 524641) +++ head/math/ipopt/Makefile (revision 524642) @@ -1,58 +1,58 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= Ipopt DISTVERSION= 3.12.13 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/Ipopt/ \ http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/:metis \ http://mumps.enseeiht.fr/:mumps DISTFILES= ${DISTNAME}${EXTRACT_SUFX} \ metis-4.0.3.tar.gz:metis MUMPS_4.10.0.tar.gz:mumps EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= yuri@FreeBSD.org COMMENT= Software package for large-scale nonlinear optimization LICENSE= EPL USES= blaslapack compiler:c++11-lang fortran libtool pathfix \ pkgconfig tar:tgz GNU_CONFIGURE= yes USE_LDCONFIG= yes TEST_TARGET= test INSTALL_TARGET= install-strip CONFIGURE_ENV+= PKG_CONFIG_PATH=${PREFIX}/libdata/pkgconfig \ CXX="${CXX} -B${LOCALBASE}/bin" CONFIGURE_ARGS= --with-lapack-lib="${LAPACKLIB} -L${LOCALBASE}/lib" \ --with-blas-lib="${BLASLIB} -L${LOCALBASE}/lib" CXXFLAGS+= -ffast-math DEBUG_CXXFLAGS= -fomit-frame-pointer DOCSDIR= ${PREFIX}/share/coin/doc/${PORTNAME} OPTIONS_DEFINE= DEBUG DOCS DOCS_ALL_TARGET= all doxydoc DOCS_BUILD_DEPENDS= doxygen:devel/doxygen PORTDOCS= * post-extract: @(${ECHO} "Extracting Metis and Mumps ThirdParty libraries ..." ) @(cd ${WRKSRC}/ThirdParty/Metis && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} ${DISTDIR}/metis-4.0.3.tar.gz ${EXTRACT_AFTER_ARGS}); @(${MV} ${WRKSRC}/ThirdParty/Metis/metis-4.0.? ${WRKSRC}/ThirdParty/Metis/metis-4.0); @(cd ${WRKSRC}/ThirdParty/Mumps && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} ${DISTDIR}/MUMPS_4.10.0.tar.gz ${EXTRACT_AFTER_ARGS}); @(${MV} ${WRKSRC}/ThirdParty/Mumps/MUMPS_4.10.0 ${WRKSRC}/ThirdParty/Mumps/MUMPS); pre-patch: @(cd ${WRKSRC}/ThirdParty/Mumps && ${PATCH} -p0 < mumps.patch && ${PATCH} -p0 < mumps_mpi.patch ) @(${MV} ${WRKSRC}/ThirdParty/Mumps/MUMPS/libseq/mpi.h ${WRKSRC}/ThirdParty/Mumps/MUMPS/libseq/mumps_mpi.h); pre-build: # workaround: configure fails to find the 'rand' function, need to investigate. This patch unbreaks the build. @${REINPLACE_CMD} -e 's|.*HAVE_RAND.*|#define HAVE_RAND 1|' ${WRKSRC}/Ipopt/src/Common/config.h .include Index: head/math/jags/Makefile =================================================================== --- head/math/jags/Makefile (revision 524641) +++ head/math/jags/Makefile (revision 524642) @@ -1,90 +1,90 @@ # Created by: Eric van Gyzen # $FreeBSD$ PORTNAME= mcmc-jags DISTVERSION= 4.3.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math MASTER_SITES= SF/mcmc-jags/JAGS/${S}.x/Source/:1 \ SF/mcmc-jags/Examples/${S}.x/:2 \ SF/mcmc-jags/Manuals/2.x/:3 \ SF/mcmc-jags/Manuals/${S}.x/:4 DISTFILES= JAGS-${PORTVERSION}${EXTRACT_SUFX}:1 DIST_SUBDIR= ${PORTNAME} EXTRACT_ONLY= ${DISTFILES:M*[12]:C|:.*||} MAINTAINER= ports@FreeBSD.org COMMENT= Just Another Gibbs Sampler LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libltdl.so:devel/libltdl GNU_CONFIGURE= yes USES= bison compiler:features fortran gmake libtool localbase pathfix USE_GCC= yes USE_LDCONFIG= yes INSTALL_TARGET= install-strip WRKSRC= ${WRKDIR}/JAGS-${PORTVERSION} OPTIONS_SINGLE= BLAS OPTIONS_SINGLE_BLAS= ATLAS OPENBLAS NETLIB OPTIONS_DEFAULT+= OPENBLAS ATLAS_USES= blaslapack:atlas ATLAS_VARS= MANUAL_PACKAGE_BUILD=\ "Choose a BLAS option other than ATLAS for package building." NETLIB_USES= blaslapack:netlib OPENBLAS_USES= blaslapack:openblas DOCS_DISTFILES= jags_developer_manual.pdf:3 jags_installation_manual.pdf:4 \ jags_user_manual.pdf:4 DOCS_PORTDOCS= ${DISTFILES:M*[34]:C|:.*||} EXAMPLES_DISTFILES= classic-bugs.tar.gz:2 EXAMPLES_PORTEXAMPLES= * CONFIGURE_ARGS+= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \ --with-lapack="${LAPACKLIB}" OPTIONS_SUB= YES PLIST_SUB= MODULEVERSION=${S} S= ${PORTVERSION:C|\..*||} OPTIONS_DEFINE= DOCS EXAMPLES post-patch: @${REINPLACE_CMD} \ -e '/@WINDOWS_FALSE@bin_SCRIPTS =/s/jags/mcmc-&/' \ -e '/CLEANFILES =/s/jags/mcmc-&/' \ -e '/@WINDOWS_FALSE@jags:/s/jags/mcmc-&/' \ -e '/@WINDOWS_FALSE@.*rm -f jags/s/jags/mcmc-&/' \ -e '/@WINDOWS_FALSE@.*mv jags.tmp jags/s/jags/mcmc-&/2' \ ${WRKSRC}/src/terminal/Makefile.in post-patch-EXAMPLES-on: @${SED} -i '' -e '\|JAGS ?=|{s|jags|mcmc-&|;s|/usr/local|${PREFIX}|;}' \ ${WRKDIR}/classic-bugs/vol[12]/Makefile post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} @cd ${_DISTDIR}; ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR} post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} @cd ${WRKDIR}/classic-bugs; ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR} .if defined(MAINTAINER_MODE) BUILD_DEPENDS+= ${LOCALBASE}/lib/R/library/coda/R/coda.rdb:math/R-cran-coda check test: install .for i in 1 2 @cd ${WRKDIR}/classic-bugs/vol${i}; ${SETENV} ${MAKE_ENV} \ ${MAKE_CMD} ${MAKE_ARGS} check .endfor @${FIND} ${WRKDIR}/classic-bugs -type f -name check.log | ${SORT} | \ ${XARGS} -tI @ ${CAT} @ .endif .include Index: head/math/lapack++/Makefile =================================================================== --- head/math/lapack++/Makefile (revision 524641) +++ head/math/lapack++/Makefile (revision 524642) @@ -1,47 +1,47 @@ # Created by: NAKATA Maho # $FreeBSD$ PORTNAME= lapack++ PORTVERSION= 2.5.4 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= math MASTER_SITES= SF/lapackpp \ http://math.nist.gov/lapack++/:doc DISTNAME= lapackpp-${PORTVERSION} DIST_SUBDIR= lapackpp EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} DISTFILES= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= fortran@FreeBSD.org COMMENT= Linear Algebra PACKage in C++, a wrapper for LAPACK USES= fortran gmake pathfix libtool OPTIONS_DEFINE= DOCS OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= OPENBLAS NETLIB ATLAS OPTIONS_DEFAULT= OPENBLAS OPENBLAS_USES= blaslapack:openblas NETLIB_USES= blaslapack:netlib ATLAS_USES= blaslapack:atlas GNU_CONFIGURE= yes USE_LDCONFIG= yes BLAS_LIB= -L${LOCALBASE}/lib ${BLASLIB} LAPACK_LIB= -L${LOCALBASE}/lib ${LAPACKLIB} #lapack++ forces to use atlas when detected, so we should disable here. CONFIGURE_ARGS+= --with-blas="${BLAS_LIB}" --with-lapack="${LAPACK_LIB}" --disable-atlas --enable-static DOCS_DISTFILES= lapack++.ps.gz:doc lapackpp1_1.ps.gz:doc lapackppman1_1.ps.gz:doc lapack++_install.ps.gz:doc post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/lapack++.ps.gz ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/lapack++_install.ps.gz ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/lapackpp1_1.ps.gz ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/lapackppman1_1.ps.gz ${STAGEDIR}${DOCSDIR} .include Index: head/math/lapack95/Makefile =================================================================== --- head/math/lapack95/Makefile (revision 524641) +++ head/math/lapack95/Makefile (revision 524642) @@ -1,82 +1,82 @@ # Created by: NAKATA, Maho # $FreeBSD$ PORTNAME= lapack95 PORTVERSION= 1.0 -PORTREVISION= 18 +PORTREVISION= 19 CATEGORIES= math MASTER_SITES= NL DISTNAME= ${PORTNAME} DIST_SUBDIR= lapack95 MAINTAINER= ports@FreeBSD.org COMMENT= LAPACK95, Fortran90/95 wrapper for LAPACK USES= fortran tar:tgz OPTIONS_DEFINE= EXAMPLES OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= REFERENCE ATLAS OPTIONS_DEFAULT= REFERENCE REFERENCE_DESC= Blas / Lapack REFERENCE_USES= blaslapack:netlib ATLAS_DESC= ATLAS ATLAS_USES= blaslapack:atlas USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/LAPACK95 MAKE_JOBS_UNSAFE=yes .include .if ${ARCH} == "sparc64" PICFLAG?= -fPIC .else PICFLAG?= -fpic .endif .if ${PORT_OPTIONS:MEXAMPLES} PORTEXAMPLES= make.inc EXAMPLES1 EXAMPLES2 .endif pre-configure: ${REINPLACE_CMD} -e 's|%%BLAS%%|${BLASLIB}|g ; \ s|%%FC%%|${FC}|g ; \ s|%%FFLAGS%%|${FFLAGS} $${PICFLAG}|g ; \ s|%%LAPACK%%|${LAPACKLIB}|g ; \ s|%%LDFLAGS%%|${LDFLAGS}|g ; \ s|%%LOCALBASE%%|${LOCALBASE}|g ; \ s|%%PREFIX%%|${PREFIX}|g' \ ${WRKSRC}/make.inc ${REINPLACE_CMD} -e 's|ranlib|${RANLIB}|g ; \ s|ar cr|${AR} cr|g' \ ${WRKSRC}/SRC/makefile \ ${WRKSRC}/TESTING/makefile \ ${WRKSRC}/EXAMPLES1/makefile* ${MKDIR} ${WRKSRC}/lapack95_modules ${CP} -r ${WRKSRC} ${WRKSRC}_SHARED do-build: cd ${WRKSRC}/SRC; ${SETENV} ${MAKE_ENV} PICFLAG= \ ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} single_double_complex_dcomplex cd ${WRKSRC}_SHARED/SRC; ${SETENV} ${MAKE_ENV} PICFLAG=${PICFLAG} \ ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} single_double_complex_dcomplex cd ${WRKSRC}_SHARED ; ${LD} -Bshareable -o liblapack95.so.1 -x -soname \ liblapack95.so.1 --whole-archive lapack95.a do-install: ${INSTALL_DATA} ${WRKSRC}/lapack95.a ${STAGEDIR}${PREFIX}/lib/liblapack95.a ${INSTALL_LIB} ${WRKSRC}_SHARED/liblapack95.so.1 ${STAGEDIR}${PREFIX}/lib ${LN} -sf liblapack95.so.1 ${STAGEDIR}${PREFIX}/lib/liblapack95.so ${MKDIR} ${STAGEDIR}${PREFIX}/lib/lapack95_modules ${INSTALL_DATA} ${WRKSRC}_SHARED/lapack95_modules/*.mod ${STAGEDIR}${PREFIX}/lib/lapack95_modules .if ${PORT_OPTIONS:MEXAMPLES} @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} cd ${WRKSRC} && ${COPYTREE_SHARE} "${PORTEXAMPLES}" ${STAGEDIR}${EXAMPLESDIR} .endif .include Index: head/math/levmar/Makefile =================================================================== --- head/math/levmar/Makefile (revision 524641) +++ head/math/levmar/Makefile (revision 524642) @@ -1,73 +1,73 @@ # Created by: Eijiro Shibusawa # $FreeBSD$ PORTNAME= levmar PORTVERSION= 2.6 -PORTREVISION= 12 +PORTREVISION= 13 CATEGORIES= math MASTER_SITES= http://users.ics.forth.gr/~lourakis/levmar/ MAINTAINER= phd_kimberlite@yahoo.co.jp COMMENT= GPL-licensed library implementing the Levenberg-Marquardt algorithm LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE USE_LDCONFIG= yes USES= fortran tar:tgz uidfix OPTIONS_DEFINE= DOCS EXAMPLES PROFILE OPTIONS_SINGLE= BLASLIB OPTIONS_DEFAULT= NETLIB OPTIONS_SINGLE_BLASLIB= ATLAS NETLIB OPENBLAS PROFILE_DESC= Build a profiling library ATLAS_USES= blaslapack:atlas NETLIB_USES= blaslapack:netlib OPENBLAS_USES= blaslapack:openblas .include PORTDOCS= README.txt PORTEXAMPLES= lmdemo.c Makefile.demo PLIST_FILES= include/levmar.h \ lib/liblevmar.a \ lib/liblevmar.so \ lib/liblevmar.so.2 .if ${PORT_OPTIONS:MPROFILE} .if defined(NOPROFILE) || defined(NO_PROFILE) || defined(WITHOUT_PROFILE) IGNORE= you have defined WITH_PROFILE, but have also defined\ WITHOUT_PROFILE, NOPROFILE, or NO_PROFILE .elif !exists(/usr/lib/libc_p.a) IGNORE= you have chosen WITH_PROFILE, but have not installed the\ base system profiling libraries .endif PLIST_FILES+= lib/liblevmar_p.a .else MAKE_ENV+= WITHOUT_PROFILE=true .endif post-extract: @${MV} ${WRKSRC}/Makefile ${WRKSRC}/Makefile.dist @${CP} ${FILESDIR}/Makefile.lib ${WRKSRC}/Makefile @${CP} ${FILESDIR}/Makefile.demo ${WRKSRC}/ @${REINPLACE_CMD} -e 's+%%CC%%+${CC}+g' \ -e 's+%%CFLAGS%%+${CFLAGS} -I${LOCALBASE}/include+g' \ -e 's+%%LDFLAGS%%+${LDFLAGS}+g' \ -e 's+%%BLAS%%+${BLASLIB}+g' \ -e 's+%%LAPACK%%+${LAPACKLIB}+g' \ ${WRKSRC}/Makefile.demo post-install: @${MKDIR} ${STAGEDIR}${DOCSDIR} @(cd ${WRKSRC}/ && ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR}) @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} @(cd ${WRKSRC}/ && ${INSTALL_DATA} ${PORTEXAMPLES} ${STAGEDIR}${EXAMPLESDIR}) test check: install @( cd ${WRKSRC} ; ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} Makefile.demo \ ${_MAKE_JOBS} ${MAKE_ARGS} ${ALL_TARGET} ) ${WRKSRC}/lmdemo .include Index: head/math/moab/Makefile =================================================================== --- head/math/moab/Makefile (revision 524641) +++ head/math/moab/Makefile (revision 524642) @@ -1,37 +1,37 @@ # $FreeBSD$ PORTNAME= moab DISTVERSION= 5.0.0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/ MAINTAINER= yuri@FreeBSD.org COMMENT= Component for representing and evaluating mesh data LICENSE= LGPL3+ LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf \ libopenblas.so:math/openblas USES= cmake:noninja compiler:c++11-lang eigen:3 fortran USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so BB_ACCOUNT= fathomteam BB_PROJECT= ${PORTNAME} BB_COMMIT= c4eed56fd6d2 WRKSRC= ${WRKDIR}/${BB_ACCOUNT}-${BB_PROJECT}-${BB_COMMIT} OPTIONS_DEFINE= MPI OPTIONS_DEFAULT= MPI OPTIONS_SUB= yes MPI_CMAKE_BOOL= ENABLE_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi .include Index: head/math/octave/Makefile =================================================================== --- head/math/octave/Makefile (revision 524641) +++ head/math/octave/Makefile (revision 524642) @@ -1,128 +1,128 @@ # Created by: chuckr@FreeBSD.org # $FreeBSD$ PORTNAME= octave PORTVERSION= ${OCTAVE_VERSION} -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math MASTER_SITES= GNU MAINTAINER= stephen@FreeBSD.org COMMENT= High-level interactive language for numerical computations LICENSE= GPLv3 BUILD_DEPENDS= gnuplot:math/gnuplot \ ${LOCALBASE}/bin/gperf:devel/gperf \ gsed:textproc/gsed \ ${LOCALBASE}/bin/makeinfo:print/texinfo RUN_DEPENDS= gnuplot:math/gnuplot \ gsed:textproc/gsed \ ${LOCALBASE}/bin/makeinfo:print/texinfo LIB_DEPENDS= libGraphicsMagick.so:graphics/GraphicsMagick \ libarpack.so:math/arpack-ng \ libcurl.so:ftp/curl \ libfftw3.so:math/fftw3 \ libfftw3f.so:math/fftw3-float \ libfltk.so:x11-toolkits/fltk \ libftgl.so:graphics/ftgl \ libhdf5.so:science/hdf5 \ libpcre.so:devel/pcre \ libqhull.so.5:math/qhull5 \ libqrupdate.so:math/qrupdate \ libumfpack.so:math/suitesparse \ libglpk.so:math/glpk \ libgl2ps.so:print/gl2ps \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ libdrm.so:graphics/libdrm \ libOSMesa.so:graphics/libosmesa \ libsundials_arkode.so:math/sundials \ libportaudio.so:audio/portaudio # libsndfile.so:audio/libsndfile # Commented out until this port no longer has vulnerabilities. USES= charsetfix fortran gmake libtool perl5 pkgconfig readline \ tar:xz compiler:c++14-lang \ desktop-file-utils gl iconv xorg USE_LDCONFIG= ${PREFIX}/lib/${PORTNAME}/${PORTVERSION} USE_PERL5= build GNU_CONFIGURE= yes USE_QT= core gui help network opengl \ qmake_build buildtools_build linguist_build \ printsupport sql widgets \ xml USE_XORG= x11 xext xfixes xft \ xcursor xinerama xrender USE_GL= gl glu OCTAVE_VERSION= ${PORTVERSION} GNU_HOST= ${ARCH}-portbld-freebsd${OSREL} PLIST_SUB= OCTAVE_VERSION=${OCTAVE_VERSION} GNU_HOST=${GNU_HOST} CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib -L${LOCALBASE}/lib/qt5 CONFIGURE_ENV= GPERF="${LOCALBASE}/bin/gperf" \ JAVA_HOME=${JAVA_HOME} \ MAKEINFO=${LOCALBASE}/bin/makeinfo \ MKINFO=${LOCALBASE}/bin/makeinfo \ MOC_QTVER=${LOCALBASE}/bin/moc \ UIC_QTVER=${LOCALBASE}/bin/uic \ RCC_QTVER=${LOCALBASE}/bin/rcc \ ac_cv_type_max_align_t=yes \ ac_cv_path_SED=${LOCALBASE}/bin/gsed CONFIGURE_ARGS= --host=${GNU_HOST} \ --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \ --with-lapack="${LAPACKLIB}" \ --enable-shared \ --disable-jit \ --disable-openmp \ --with-osmesa INFO= octave liboctave INSTALL_TARGET= install-strip OPTIONS_DEFINE= DOCS JAVA QT5 OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= OPENBLAS NETLIB ATLAS OPTIONS_DEFAULT= JAVA OPENBLAS QT5 OPTIONS_SUB= yes DOCS_CONFIGURE_ENABLE= docs JAVA_CONFIGURE_ENABLE= java QT5_CONFIGURE_WITH= qt=5 qscintilla QT5_LIB_DEPENDS= libqscintilla2_qt5.so:devel/qscintilla2-qt5 DOCS_USE= TEX=dvipsk:build,formats:build JAVA_USE= JAVA=yes QT5_USES= qt:5 OPENBLAS_USES= blaslapack:openblas NETLIB_USES= blaslapack:netlib ATLAS_USES= blaslapack:atlas post-patch: ${REINPLACE_CMD} 's+"makeinfo"+"${LOCALBASE}/bin/makeinfo"+' ${WRKSRC}/libinterp/corefcn/help.cc ${REINPLACE_CMD} 's/"-qt$$qt_version"/"-qt=qt$$qt_version"/' ${WRKSRC}/configure post-install: (cd ${STAGEDIR}${DATADIR} && ${LN} -s ${PORTVERSION}/imagelib .) post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} .for file in liboctave/liboctave.ps \ refcard/refcard-a4.ps refcard/refcard-legal.ps \ refcard/refcard-letter.ps interpreter/octave.ps ${INSTALL_DATA} ${WRKSRC}/doc/${file} ${STAGEDIR}${DOCSDIR} .endfor @${MKDIR} ${STAGEDIR}${PREFIX}/${INFO_PATH} .for file in interpreter/octave.info liboctave/liboctave.info ${INSTALL_DATA} ${WRKSRC}/doc/${file} ${STAGEDIR}${PREFIX}/${INFO_PATH} .endfor check regression-test: build @(cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} check) .include "Makefile.version" .include Index: head/math/octave-forge-ltfat/Makefile =================================================================== --- head/math/octave-forge-ltfat/Makefile (revision 524641) +++ head/math/octave-forge-ltfat/Makefile (revision 524642) @@ -1,37 +1,37 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= octave-forge-ltfat PORTVERSION= 2.3.1 -PORTREVISION= 6 +PORTREVISION= 7 PORTEPOCH= 1 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org COMMENT= Octave-forge package ${OCTAVE_PKGNAME} LICENSE= GPLv3 LICENSE_FILE= ${WRKDIR}/${OCTSRC}/COPYING LIB_DEPENDS= libfftw3.so:math/fftw3 \ libportaudio.so:audio/portaudio \ libopenblas.so:math/openblas # OCTSRC is the name of the directory of the package. # It is usually ${OCTAVE_PKGNAME} or ${DISTNAME}. OCTSRC= ${OCTAVE_PKGNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src GNU_CONFIGURE= yes .include "${.CURDIR}/../../Mk/bsd.octave.mk" post-build: ${RM} ${WRKSRC}/Makefile ${WRKSRC}/configure ${RM} ${WRKSRC}/../inst/DESCRIPTION ${RM} ${WRKSRC}/../inst/ltfat/DESCRIPTION ${RM} ${WRKSRC}/../inst/ltfat/inst/DESCRIPTION cd ${WRKDIR} && ${TAR} cfz ${DISTNAME}.tar.gz ${OCTSRC} .include Index: head/math/openblas/Makefile =================================================================== --- head/math/openblas/Makefile (revision 524641) +++ head/math/openblas/Makefile (revision 524642) @@ -1,170 +1,146 @@ # Created by: Eijiro Shibusawa # $FreeBSD$ PORTNAME= openblas PORTVERSION= 0.3.7 +PORTREVISION= 1 DISTVERSIONPREFIX= v PORTEPOCH= 1 CATEGORIES= math MASTER_SITES= NL/lapack/timing/:lapack_tmg DISTFILES= large.tgz:lapack_tmg \ timing.tgz:lapack_tmg DIST_SUBDIR= openblas PATCH_SITES= https://github.com/xianyi/OpenBLAS/commit/ PATCHFILES= 3e67017ac8f0246f5fc14572ca663fb0968d1046.patch:-p1 MAINTAINER= phd_kimberlite@yahoo.co.jp COMMENT= Optimized BLAS library based on GotoBLAS2 LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE USES= fortran gmake perl5 pkgconfig CONFLICTS_INSTALL= cblas lapacke USE_GITHUB= yes GH_ACCOUNT= xianyi GH_PROJECT= OpenBLAS LARGE_FILE= large.tgz TIMING_FILE= timing.tgz USE_LDCONFIG= yes USE_PERL5= build OPENBLAS_SVER= 0 TEST_TARGET= tests -BUILDFLAGS= FCOMMON_OPT=-frecursive MAKE_NB_JOBS=-1 +PLIST_SUB+= PORTVERSION=${PORTVERSION} OPTIONS_DEFINE= INTERFACE64 OPENMP -OPTIONS_DEFINE_i386= AVX AVX2 DYNAMIC_ARCH -OPTIONS_DEFINE_amd64= AVX AVX2 DYNAMIC_ARCH +OPTIONS_DEFINE_i386= AVX AVX2 DYNAMIC_ARCH +OPTIONS_DEFINE_amd64= AVX AVX2 DYNAMIC_ARCH OPTIONS_DEFINE_powerpc64= POWER6 OPTIONS_EXCLUDE_powerpc64= OPENMP .if defined(BATCH) || defined(PACKAGE_BUILDING) OPTIONS_DEFAULT_i386= DYNAMIC_ARCH OPTIONS_DEFAULT_amd64= DYNAMIC_ARCH .endif DYNAMIC_ARCH_DESC= Support multiple CPU types on i386 and amd64 INTERFACE64_DESC= Use 8 byte integers on 64-bit architectures OPENMP_DESC= Use OpenMP for threading AVX_DESC= Support Advanced Vector Extensions (AVX) AVX2_DESC= Support Advanced Vector Extensions 2 (AVX2) POWER6_DESC= Optimize for POWER6, instead of the default PPC970 .include .if ${ARCH} == powerpc64 USE_GCC= yes . if ${PORT_OPTIONS:MPOWER6} TARGET_CPU_ARCH= POWER6 .else TARGET_CPU_ARCH= PPC970 . endif .endif -.if defined(TARGET_CPU_ARCH) -BUILDFLAGS+= TARGET=${TARGET_CPU_ARCH} -MAKE_ENV+= TARGET=${TARGET_CPU_ARCH} -.endif +MAXTHREADS?= 64 -MAXTHREADS?= 64 -BUILDFLAGS_THREAD+= NUM_THREADS=${MAXTHREADS} USE_THREAD=1 - -.if ${ARCH:M*64} == "" -BUILDFLAGS+= BINARY32=1 -.else -BUILDFLAGS+= BINARY64=1 -.endif - .if ! ${PORT_OPTIONS:MDYNAMIC_ARCH} && ( ${ARCH} == "amd64" || ${ARCH} == "i386" ) MANUAL_PACKAGE_BUILD= Optimizes for the build machine. .endif .if ${PORT_OPTIONS:MDYNAMIC_ARCH} -BUILDFLAGS+= DYNAMIC_ARCH=1 PLIST_SUB+= DYNARCH="" .else PLIST_SUB+= DYNARCH="@comment " .endif -.if ${PORT_OPTIONS:MINTERFACE64} -BUILDFLAGS+= INTERFACE64=1 -.endif - -.if ! ${PORT_OPTIONS:MAVX} -BUILDFLAGS+= NO_AVX=1 -.endif - -.if ! ${PORT_OPTIONS:MAVX2} -BUILDFLAGS+= NO_AVX2=1 -.endif - .if ${PORT_OPTIONS:MOPENMP} -USES+= compiler:openmp -BUILDFLAGS_THREAD+= USE_OPENMP=1 +USES+= compiler:openmp .else USES+= compiler:c11 .endif .include .if ${PORT_OPTIONS:MOPENMP} .if ${CHOSEN_COMPILER_TYPE} == gcc USE_GCC= yes .endif .endif post-extract: cd ${DISTDIR}/${DIST_SUBDIR} ; \ ${CP} ${LARGE_FILE} ${TIMING_FILE} ${WRKSRC} +post-patch: + @${ECHO} MAKE_NB_JOBS=-1 >> ${WRKSRC}/Makefile.rule + @${ECHO} NUM_THREADS=${MAXTHREADS} >> ${WRKSRC}/Makefile.rule + @${ECHO} USE_THREAD=1 >> ${WRKSRC}/Makefile.rule +.if ! ${PORT_OPTIONS:MAVX} + @${ECHO} NO_AVX=1 >> ${WRKSRC}/Makefile.rule +.endif +.if ! ${PORT_OPTIONS:MAVX2} + @${ECHO} NO_AVX2=1 >> ${WRKSRC}/Makefile.rule +.endif +.if ${PORT_OPTIONS:MDYNAMIC_ARCH} + @${ECHO} DYNAMIC_ARCH=1 >> ${WRKSRC}/Makefile.rule + @${ECHO} DYNAMIC_OLDER=1 >> ${WRKSRC}/Makefile.rule +.endif +.if defined(TARGET_CPU_ARCH) + @${ECHO} TARGET=${TARGET_CPU_ARCH} >> ${WRKSRC}/Makefile.rule +.endif +.if ${PORT_OPTIONS:MINTERFACE64} + @${ECHO} INTERFACE64=1 >> ${WRKSRC}/Makefile.rule +.endif +.if ${PORT_OPTIONS:MOPENMP} + @${ECHO} USE_OPENMP=1 >> ${WRKSRC}/Makefile.rule +.endif +.if ${ARCH:M*64} == "" + @${ECHO} BINARY=32 >> ${WRKSRC}/Makefile.rule +.else + @${ECHO} BINARY=64 >> ${WRKSRC}/Makefile.rule +.endif + post-patch-OPENMP-on: @${REINPLACE_CMD} -e "s+OPENBLAS_NUM_THREADS+OMP_NUM_THREADS+g" \ ${WRKSRC}/test/Makefile \ ${WRKSRC}/ctest/Makefile BENCHMARK_MAXTHREADS?= ${MAXTHREADS} .if ${PORT_OPTIONS:MOPENMP} BENCHMARK_THREADS_FLAG= OMP_NUM_THREADS=${BENCHMARK_MAXTHREADS} .else BENCHMARK_THREADS_FLAG= OPENBLAS_NUM_THREADS=${BENCHMARK_MAXTHREADS} .endif benchmark: build - cd ${WRKSRC} ; ${SETENV} ${BUILDFLAGS} NUM_THREADS=${MAXTHREADS} \ - USE_THREAD=1 ${MAKE_CMD} ${MAKE_ARGS} hpl - cd ${WRKSRC}/benchmark ; ${SETENV} ${BUILDFLAGS} NUM_THREADS=${MAXTHREADS} \ - USE_THREAD=1 ${BENCHMARK_THREADS_FLAG} ${MAKE_CMD} ${MAKE_ARGS} - -post-install: - cd ${WRKSRC} && \ - ${FIND} . -name 'common*.h' -print | ${XARGS} ${BASENAME} | ${XARGS} -I {} ${MV} {} openblas_{} - ${MV} ${WRKSRC}/version.h ${WRKSRC}/openblas_version.h - ${MV} ${WRKSRC}/param.h ${WRKSRC}/openblas_param.h - ${MV} ${WRKSRC}/cpuid.h ${WRKSRC}/openblas_cpuid.h - ${MV} ${WRKSRC}/config.h ${WRKSRC}/openblas_config.h - ${REINPLACE_CMD} \ - -e 's/"common.h"/"openblas_common.h"/' \ - -e 's/"version.h"/"openblas_version.h"/' \ - -e 's/"param.h"/"openblas_param.h"/' \ - -e 's/"cpuid.h"/"openblas_cpuid.h"/' \ - -e 's/"config.h"/"openblas_config.h"/' \ - -e 's/"common_/"openblas_common_/' \ - ${WRKSRC}/*.h \ - ${WRKSRC}/*.c \ - ${WRKSRC}/interface/*.c - ${MKDIR} ${STAGEDIR}${PREFIX}/include/openblas - ${INSTALL_DATA} ${WRKSRC}/openblas_*.h ${STAGEDIR}${PREFIX}/include/openblas - ${INSTALL_DATA} ${WRKSRC}/cblas.h ${WRKSRC}/config_last.h ${WRKSRC}/l1param.h ${WRKSRC}/l2param.h ${WRKSRC}/symcopy.h \ - ${STAGEDIR}${PREFIX}/include/openblas - ${MV} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}_*-r${PORTVERSION}.a ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.a - ${MV} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}_*-r${PORTVERSION}.so ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.so.${OPENBLAS_SVER} - ${RM} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.so - ${LN} -sf lib${PORTNAME}.so.${OPENBLAS_SVER} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.so + cd ${WRKSRC} ; ${SETENV} ${MAKE_CMD} ${MAKE_ARGS} hpl + cd ${WRKSRC}/benchmark ; ${SETENV} ${BENCHMARK_THREADS_FLAG} ${MAKE_CMD} ${MAKE_ARGS} .include Index: head/math/openblas/pkg-plist =================================================================== --- head/math/openblas/pkg-plist (revision 524641) +++ head/math/openblas/pkg-plist (revision 524642) @@ -1,52 +1,14 @@ include/cblas.h include/f77blas.h include/lapacke.h include/lapacke_config.h include/lapacke_mangling.h include/lapacke_utils.h -include/openblas/cblas.h -include/openblas/config_last.h -include/openblas/l1param.h -include/openblas/l2param.h -include/openblas/openblas_common.h -include/openblas/openblas_common_alpha.h -include/openblas/openblas_common_arm.h -include/openblas/openblas_common_arm64.h -include/openblas/openblas_common_c.h -include/openblas/openblas_common_d.h -include/openblas/openblas_common_ia64.h -include/openblas/openblas_common_interface.h -include/openblas/openblas_common_lapack.h -include/openblas/openblas_common_level1.h -include/openblas/openblas_common_level2.h -include/openblas/openblas_common_level3.h -include/openblas/openblas_common_linux.h -include/openblas/openblas_common_macro.h -include/openblas/openblas_common_mips.h -include/openblas/openblas_common_mips64.h -include/openblas/openblas_common_param.h -include/openblas/openblas_common_power.h -include/openblas/openblas_common_q.h -include/openblas/openblas_common_reference.h -include/openblas/openblas_common_s.h -include/openblas/openblas_common_sparc.h -include/openblas/openblas_common_stackalloc.h -include/openblas/openblas_common_thread.h -include/openblas/openblas_common_x.h -include/openblas/openblas_common_x86.h -include/openblas/openblas_common_x86_64.h -include/openblas/openblas_common_z.h -include/openblas/openblas_common_zarch.h -include/openblas/openblas_config.h -include/openblas/openblas_cpuid.h -include/openblas/openblas_config_template.h -include/openblas/openblas_param.h -include/openblas/openblas_version.h -include/openblas/symcopy.h include/openblas_config.h lib/cmake/openblas/OpenBLASConfig.cmake lib/cmake/openblas/OpenBLASConfigVersion.cmake lib/libopenblas.a lib/libopenblas.so -lib/libopenblas.so.0 +lib/libopenblasp-r%%PORTVERSION%%.a +lib/libopenblasp-r%%PORTVERSION%%.so libdata/pkgconfig/openblas.pc Index: head/math/openturns/Makefile =================================================================== --- head/math/openturns/Makefile (revision 524641) +++ head/math/openturns/Makefile (revision 524642) @@ -1,52 +1,52 @@ # $FreeBSD$ PORTNAME= openturns DISTVERSIONPREFIX= v DISTVERSION= 1.14 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Uncertainty treatment library LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/COPYING.LESSER BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ flex:textproc/flex LIB_DEPENDS= libceres.so:math/ceres-solver \ libcminpack.so:math/cminpack \ libgflags.so:devel/gflags \ libglog.so:devel/glog \ libnlopt.so:math/nlopt \ libopt.so:math/optpp \ libtbb.so:devel/tbb \ libhmat-oss.so:math/hmat-oss USES= bison blaslapack:openblas cmake compiler:c++11-lang eigen:3 gnome localbase:ldflags pkgconfig USE_GITHUB= yes USE_GNOME= libxml2 USE_LDCONFIG= yes CMAKE_ARGS= -DBLAS_LIBRARIES=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES=${LOCALBASE}/lib/libopenblas.so \ -DOPENTURNS_EXAMPLE_PATH:STRING=share/examples/openturns \ -DOPENTURNS_DOC_PATH:STRING=share/doc/openturns CMAKE_OFF= USE_DOXYGEN USE_SPHINX OPTIONS_DEFINE= PYTHON EXAMPLES OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes PYTHON_USES= python PYTHON_CMAKE_BOOL= BUILD_PYTHON PYTHON_CMAKE_ON= -DSWIG_EXECUTABLE=${LOCALBASE}/bin/swig3.0 PYTHON_BUILD_DEPENDS= swig3.0:devel/swig30 \ ${PYTHON_RUN_DEPENDS} PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} PORTEXAMPLES= * post-install: @${RM} -r ${STAGEDIR}${DOCSDIR} .include Index: head/math/osi/Makefile =================================================================== --- head/math/osi/Makefile (revision 524641) +++ head/math/osi/Makefile (revision 524642) @@ -1,33 +1,34 @@ # $FreeBSD$ PORTNAME= Osi DISTVERSION= 0.108.5 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/ PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= COIN-OR Open Solver Interface, an API for calling solver libraries LICENSE= EPL LICENSE_FILE= ${WRKSRC}/Osi/LICENSE BUILD_DEPENDS= ${RUN_DEPENDS} LIB_DEPENDS= libCoinUtils.so:math/coinutils \ libopenblas.so:math/openblas RUN_DEPENDS= coin-or-Data-Sample>0:math/coin-or-data-sample \ coin-or-Data-Netlib>0:math/coin-or-data-netlib USES= fortran gmake libtool localbase:ldflags pkgconfig tar:tgz GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-blas-lib="-lopenblas" --with-lapack-lib="-lopenblas" \ --with-sample-datadir="${LOCALBASE}/share/coin/Data/Sample" \ --with-netlib-datadir="${LOCALBASE}/share/coin/Data/Netlib" \ --with-coinutils-incdir="${LOCALBASE}/include/coin" --with-coinutils-lib="${LOCALBASE}/lib/libCoinUtils.so" # Incompatible with optional dependencies glpk and SoPlex: https://projects.coin-or.org/Osi/ticket/117 https://projects.coin-or.org/Osi/ticket/118 USE_LDCONFIG= yes post-install: @${RM} -r ${STAGEDIR}${PREFIX}/share/coin .include Index: head/math/primme/Makefile =================================================================== --- head/math/primme/Makefile (revision 524641) +++ head/math/primme/Makefile (revision 524642) @@ -1,58 +1,59 @@ # $FreeBSD$ PORTNAME= primme DISTVERSIONPREFIX= v DISTVERSION= 3.0.2 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Iterative eigensolver for symmetric and hermitian matrices LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING.txt TEST_DEPENDS= gfortran${GCC_DEFAULT}:lang/gcc${GCC_DEFAULT} USES= gmake localbase:ldflags USE_GITHUB= yes MAKEFILE= makefile ALL_TARGET= solib USE_LDCONFIG= yes BINARY_ALIAS= make=${GMAKE} CFLAGS+= -fPIC LDFLAGS+= ${LAPACKLIB} -lm OPTIONS_RADIO= LINALG OPTIONS_RADIO_LINALG= ATLAS GOTOBLAS NETLIB OPENBLAS OPTIONS_DEFAULT= OPENBLAS LINALG_DESC= Choose which linear algebra interface (LAPACK) implementation to use: GOTOBLAS_DESC= Goto blas implementation ATLAS_USES= blaslapack:atlas GOTOBLAS_USES= blaslapack:gotoblas NETLIB_USES= blaslapack:netlib NETLIB_LDFLAGS= -lblas # XXX why this isn't covered by blaslapack:netlib? OPENBLAS_USES= blaslapack:openblas TEST_ENV= ${MAKE_ENV} F77=gfortran${GCC_DEFAULT} FLDR=gfortran${GCC_DEFAULT} \ LDFLAGS="-lm -Wl,-rpath=${LOCALBASE}/lib/gcc${GCC_DEFAULT} ${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so" \ USE_MPI=no USE_PETSC=no PETSC_DIR=${LOCALBASE} TEST_TARGET= all_tests test PLIST_FILES= include/primme.h \ include/primme_eigs.h \ include/primme_eigs_f77.h \ include/primme_eigs_f90.inc \ include/primme_f77.h \ include/primme_f90.inc \ include/primme_svds.h \ include/primme_svds_f77.h \ include/primme_svds_f90.inc \ lib/libprimme.so \ lib/libprimme.so.3 \ lib/libprimme.so.3.0 .include Index: head/math/py-numpy/Makefile =================================================================== --- head/math/py-numpy/Makefile (revision 524641) +++ head/math/py-numpy/Makefile (revision 524642) @@ -1,78 +1,78 @@ # Created by: Tony Maher # $FreeBSD$ PORTNAME= numpy PORTVERSION= 1.16.5 -PORTREVISION= 3 +PORTREVISION= 4 PORTEPOCH= 1 CATEGORIES= math python MASTER_SITES= CHEESESHOP \ https://docs.scipy.org/doc/${PORTNAME}-${PORTVERSION}/:doc PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTFILES= ${DISTNAME}${EXTRACT_SUFX} \ ${PORTNAME}-ref-${PORTVERSION:R}.1.pdf:doc \ ${PORTNAME}-user-${PORTVERSION:R}.1.pdf:doc EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= python@FreeBSD.org COMMENT= The New Numeric Extension to Python LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} USES= fortran python zip USE_PYTHON= allflavors autoplist concurrent cython distutils GCCLIBDIR_CMDS= ${FC} -print-file-name=libgfortran.so | ${SED} -e s/libgfortran.so// LDFLAGS+= -shared PYDISTUTILS_BUILDARGS= --fcompiler=gnu95 PYDISTUTILS_CONFIGUREARGS= --fcompiler=gnu95 PORTDOCS= * OPTIONS_DEFINE= DOCS SUITESPARSE OPTIONS_SINGLE= BLASLIB OPTIONS_SINGLE_BLASLIB= ATLAS NETLIB OPENBLAS OPTIONS_DEFAULT= OPENBLAS SUITESPARSE SUITESPARSE_DESC= Use AMD and UMFPACK in SuiteSparse ATLAS_USES= blaslapack:atlas ATLAS_VARS= BLASLIBS="ptf77blas, ptcblas" BLASNAME=atlas LAPACKLIBS=alpack LIBRARIES=atlas_libs NETLIB_USES= blaslapack:netlib NETLIB_VARS= BLASLIBS="blas, cblas" BLASNAME=atlas LAPACKLIBS=lapack LIBRARIES=atlas_libs NETLIB_LIB_DEPENDS= libcblas.so:math/cblas OPENBLAS_USES= blaslapack:openblas OPENBLAS_VARS= BLASLIBS="openblas, gfortran" BLASNAME=openblas LAPACKLIBS="openblas, gfortran" LIBRARIES=libraries SUITESPARSE_LIB_DEPENDS=libumfpack.so:math/suitesparse post-extract: @${TOUCH} ${WRKSRC}/numpy/f2py/tests/src/temp post-patch: @${REINPLACE_CMD} -e 's|%%FC%%|${FC}|' ${WRKSRC}/numpy/distutils/fcompiler/gnu.py @${CP} ${FILESDIR}/site.cfg ${WRKSRC}/site.cfg post-patch-SUITESPARSE-off: @${REINPLACE_CMD} -e 's|:%%LOCALBASE%%/include/suitesparse||' ${WRKSRC}/site.cfg pre-configure: ${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' \ -e 's|%%BLASLIBS%%|${BLASLIBS}|; s|%%BLASNAME%%|${BLASNAME}|' \ -e 's|%%LAPACKLIBS%%|${LAPACKLIBS}|; s|%%LIBRARIES%%|${LIBRARIES}|' \ ${WRKSRC}/site.cfg @${REINPLACE_CMD} -e "s|%%GCCLIBDIR%%|$$(${GCCLIBDIR_CMDS})|" ${WRKSRC}/site.cfg ${WRKSRC}/numpy/distutils/system_info.py post-install: ${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name '*.so' | ${XARGS} ${STRIP_CMD} post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-ref-${PORTVERSION:R}.1.pdf ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-user-${PORTVERSION:R}.1.pdf ${STAGEDIR}${DOCSDIR} do-test: @cd ${WRKSRC} && ${PYTHON_CMD} runtests.py .include Index: head/math/py-pysparse/Makefile =================================================================== --- head/math/py-pysparse/Makefile (revision 524641) +++ head/math/py-pysparse/Makefile (revision 524642) @@ -1,29 +1,29 @@ # Created by: Yuri Victorovich # $FreeBSD$ PORTNAME= pysparse PORTVERSION= 1.3 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= math python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Fast sparse matrix library for Python LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.2,1:math/py-numpy@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.2,1:math/py-numpy@${PY_FLAVOR} LIB_DEPENDS= libopenblas.so:math/openblas USE_GITHUB= yes GH_ACCOUNT= PythonOptimizers GH_TAGNAME= f8430bd LDFLAGS+= -shared # Workaround for an obscure bug in py-numpy, see https://github.com/numpy/numpy/issues/7779 USES= fortran python:2.7 # fortran is needed for the correct build flags passed to py-numpy extension build process USE_PYTHON= distutils autoplist .include Index: head/math/py-scs/Makefile =================================================================== --- head/math/py-scs/Makefile (revision 524641) +++ head/math/py-scs/Makefile (revision 524642) @@ -1,26 +1,26 @@ # $FreeBSD$ PORTNAME= scs DISTVERSION= 2.1.1-2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Splitting conic solver for Python LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.2:science/py-scipy@${PY_FLAVOR} RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.2:science/py-scipy@${PY_FLAVOR} USES= python blaslapack:openblas fortran # fortran is for openblas USE_PYTHON= distutils autoplist CONFIGURE_ENV= BLAS_LAPACK_LIBS="openblas" MAKE_ENV= ${CONFIGURE_ENV} .include Index: head/math/qposases/Makefile =================================================================== --- head/math/qposases/Makefile (revision 524641) +++ head/math/qposases/Makefile (revision 524642) @@ -1,40 +1,40 @@ # $FreeBSD$ PORTNAME= qpOASES DISTVERSION= 3.2.1 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/ PKGNAMEPREFIX= coin-or- MAINTAINER= yuri@FreeBSD.org COMMENT= Library for online active set strategy quadratic programming problems LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake fortran tar:tgz USE_LDCONFIG= yes CMAKE_ON= BUILD_SHARED_LIBS CMAKE_OFF= QPOASES_BUILD_EXAMPLES LDFLAGS+= ${LOCALBASE}/lib/libopenblas.so EXAMPLES= example1 example1a example1b example2 example4 example5 exampleLP qrecipe # there are some other examples, but they need additional files/packages to run post-patch: @truncate -s 0 ${WRKSRC}/src/BLASReplacement.cpp ${WRKSRC}/src/LAPACKReplacement.cpp do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DQPOASES_BUILD_EXAMPLES:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ for e in ${EXAMPLES}; do \ ${ECHO} "=== Running example $${e} ===" && \ ${BUILD_WRKSRC}/bin/$${e}; \ done .include Index: head/math/scilab/Makefile =================================================================== --- head/math/scilab/Makefile (revision 524641) +++ head/math/scilab/Makefile (revision 524642) @@ -1,183 +1,183 @@ # Created by: js@jeannot.org # $FreeBSD$ PORTNAME= scilab PORTVERSION= 5.5.2 -PORTREVISION= 22 +PORTREVISION= 23 CATEGORIES= math cad java MASTER_SITES= https://www.scilab.org/download/${PORTVERSION}/ DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX} MAINTAINER= makc@FreeBSD.org COMMENT= Scientific software package for numerical computations LICENSE= GPLv2 BSD3CLAUSE LICENSE_COMB= dual LICENSE_FILE_GPLv2= ${WRKSRC}/COPYING LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/COPYING-BSD BROKEN= fails to build # A partial dependencies list can be found at: # http://wiki.scilab.org/Dependencies_of_Scilab_5.X LIB_DEPENDS= libxml2.so:textproc/libxml2 \ libpcre.so:devel/pcre \ libcurl.so:ftp/curl \ libhdf5.so:science/hdf5 \ libarpack.so:math/arpack-ng \ libfftw3.so:math/fftw3 \ libmatio.so:math/matio \ libamd.so:math/suitesparse RUN_DEPENDS= xdg-open:devel/xdg-utils USES= cpe desktop-file-utils fortran gettext gmake gnome iconv \ libtool ncurses pathfix pkgconfig shared-mime-info USE_CXXSTD= gnu++98 USE_LOCALE= en_US.UTF-8 GNU_CONFIGURE= yes INSTALLS_ICONS= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ARGS= --with-gfortran \ --without-emf \ -disable-static-system-lib CONFIGURE_ENV= BLAS_LIBS="${BLASLIB}" LAPACK_LIBS="${LAPACKLIB}" INSTALL_TARGET= install-strip TEST_TARGET= check # XXX: tests fail MAKE_JOBS_UNSAFE= yes PLIST_SUB= SHLIB_VER=${PORTVERSION} OPTIONS_DEFINE= GUI OCAML TK OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= ATLAS NETLIB OPENBLAS OPTIONS_DEFAULT= GUI NETLIB OCAML TK OPTIONS_SUB= yes ATLAS_USES= blaslapack:atlas NETLIB_USES= blaslapack:netlib OPENBLAS_USES= blaslapack:openblas GUI_DESC= Java-based Graphical User Interface OCAML_DESC= Scicos - dynamical system simulator (requires GUI) # Java dependencies: _GUI_DEPENDS+= ${JAVALIBDIR}/flexdock.jar:devel/flexdock \ ${JAVALIBDIR}/jogl2.jar:graphics/jogamp-jogl \ foprep:math/jeuclid \ ${JAVALIBDIR}/jhall.jar:java/javahelp \ ${JAVALIBDIR}/jrosetta-api.jar:java/jrosetta \ ${JAVALIBDIR}/commons-logging.jar:java/apache-commons-logging \ ${JAVALIBDIR}/jgraphx.jar:java/jgraphx \ ${JAVALIBDIR}/jlatexmath.jar:math/jlatexmath \ ${LOCALBASE}/share/java/ecj-4.5.jar:lang/gcc-ecj45 # Documentation, graphic export: _GUI_DEPENDS+= ${LOCALBASE}/share/java/fop/build/fop.jar:textproc/fop \ ${JAVALIBDIR}/jlatexmath-fop.jar:math/jlatexmath \ ${LOCALBASE}/share/java/batik/lib/batik-all.jar:graphics/batik \ ${JAVALIBDIR}/avalon-framework.jar:devel/avalon-framework \ ${JAVALIBDIR}/commons-io.jar:devel/apache-commons-io \ ${JAVALIBDIR}/xmlgraphics-commons.jar:graphics/xmlgraphics-commons # Code quality: _GUI_DEPENDS+= ${JAVALIBDIR}/commons-beanutils.jar:java/jakarta-commons-beanutils \ ${JAVALIBDIR}/antlr.jar:devel/antlr \ ${JAVALIBDIR}/junit4.jar:java/junit \ ${LOCALBASE}/bin/splint:devel/splint # Documentation building: _GUI_DEPENDS+= ${LOCALBASE}/share/xsl/docbook/javahelp/javahelp.xsl:textproc/docbook-xsl \ ${JAVALIBDIR}/saxon9he.jar:textproc/saxon-he \ ${JAVALIBDIR}/xml-apis-ext.jar:textproc/xml-commons \ xsltproc:textproc/libxslt # Other gui deps: _GUI_DEPENDS+= ${JAVALIBDIR}/looks.jar:devel/looks \ ${JAVALIBDIR}/skinlf.jar:x11-toolkits/skinlf # Can't use USE_ANT because it overrides do-build target GUI_BUILD_DEPENDS= ${_GUI_DEPENDS} \ ant:devel/apache-ant GUI_RUN_DEPENDS= ${_GUI_DEPENDS} GUI_ALL_TARGET= all doc GUI_USES= gl GUI_USE= GL=gl JAVA=yes GUI_EXTRA_PATCHES= ${PATCHDIR}/extra-patch-bin-JAVA_HOME GUI_CONFIGURE_ON= --with-jdk=${JAVA_HOME} \ --with-docbook=${LOCALBASE}/share/xsl/docbook \ --enable-build-help GUI_CONFIGURE_OFF= --without-gui \ --without-javasci \ --without-xcos \ --disable-build-help OCAML_IMPLIES= GUI OCAML_CONFIGURE_WITH= modelica OCAML_BUILD_DEPENDS= ocaml:lang/ocaml OCAML_RUN_DEPENDS= ocaml:lang/ocaml TK_CONFIGURE_OFF= --without-tk TK_CONFIGURE_ON= --with-tk-library=${LOCALBASE}/lib \ --with-tk-include=${TK_INCLUDEDIR} \ --with-tcl-library=${LOCALBASE}/lib \ --with-tcl-include=${TCL_INCLUDEDIR} TK_USES= tk xorg TK_USE= XORG=x11 TK_RUN_DEPENDS= ${LOCALBASE}/lib/bwidget/init.tcl:x11-toolkits/bwidget .if !exists(/usr/include/omp.h) CONFIGURE_ARGS+= --without-openmp .endif .include .if ${PORT_OPTIONS:MGUI} && ${JAVA_PORT_VERSION:M*8*} EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-Makefile.in .endif post-patch: @# Configure fixes @${REINPLACE_CMD} -e 's|-ldl | |' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|-lumfpack|-lumfpack -lsuitesparseconfig -lamd -lcholmod -lcolamd $$LAPACK_LIBS $$BLAS_LIBS|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|TCLTK_LIBS=" -ldl"|TCLTK_LIBS=" "|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|"x=" ==|"x" =|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|"x" ==|"x" =|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|sparc64-\*-netbsd\*|amd64-\*-freebsd\*|' ${WRKSRC}/configure @# Build fixes @${REINPLACE_CMD} -e 's|$$(CFLAGS:-O%=)|-I${LOCALBASE}/include -L${LOCALBASE}/lib|' ${WRKSRC}/modules/elementary_functions/Makefile.in @${REINPLACE_CMD} -e 's|freebsd|__FreeBSD__|g' ${WRKSRC}/modules/sparse/includes/spConfig.h @# malloc.h -> stdlib.h conversions @${GREP} -lr "" ${WRKSRC} \ | ${XARGS} ${REINPLACE_CMD} -e \ 's/[<"]malloc.h[>"]//' @# Run fixes @${REINPLACE_CMD} -e 's|%%JAVALIBDIR%%|${JAVALIBDIR}|' ${WRKSRC}/etc/librarypath.xml @${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|' ${WRKSRC}/etc/librarypath.xml @${REINPLACE_CMD} -e 's, gfortran, ${FC},' ${WRKSRC}/modules/dynamic_link/src/scripts/configure post-patch-GUI-on: @# Configure fixes @${REINPLACE_CMD} -e 's|/usr/lib/java|${JAVALIBDIR}|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|/usr/lib64/jni|${LOCALBASE}/lib/|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|$$jardir/batik-all.jar|${LOCALBASE}/share/java/batik/lib/batik-all.jar|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|$$jardir/fop.jar|${LOCALBASE}/share/java/fop/build/fop.jar|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|$$jardir/jeuclid-core*.jar|${LOCALBASE}/share/java/jeuclid/repo/jeuclid-core*.jar|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|jrosetta-API.jar|jrosetta-api.jar|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|javax.media.opengl.glu.GLUnurbs|com.jogamp.opengl.glu.GLUnurbs|' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|jogamp.common.os.MachineDescriptionRuntime|jogamp.common.os.MachineDataInfoRuntime|' ${WRKSRC}/configure @# Run fixes @${REINPLACE_CMD} -e 's|%%JAVA_HOME%%|${JAVA_HOME}|' ${WRKSRC}/bin/scilab @${REINPLACE_CMD} -e 's|/usr/share/scilab|${DATADIR}|' ${WRKSRC}/desktop/scilab.desktop @${REINPLACE_CMD} -e 's|/usr/share/scilab-cli|${DATADIR}|' \ ${WRKSRC}/desktop/scilab-adv-cli.desktop ${WRKSRC}/desktop/scilab-cli.desktop pre-install: ${MKDIR} ${STAGEDIR}${DATADIR}/.atoms post-install: @# Remove empty dirs in DATADIR/modules - they will be removed by the @# toolbox uninstaller otherwise if 3rd party toolboxes are used @${FIND} ${STAGEDIR}${DATADIR}/modules -type d -empty -delete .include Index: head/math/scs/Makefile =================================================================== --- head/math/scs/Makefile (revision 524641) +++ head/math/scs/Makefile (revision 524642) @@ -1,26 +1,26 @@ # $FreeBSD$ PORTNAME= scs DISTVERSION= 2.1.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Solver of convex cone problems via operator splitting LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt USES= gmake blaslapack:openblas fortran # fortran is for openblas USE_GITHUB= yes GH_ACCOUNT= cvxgrp USE_LDCONFIG= yes MAKE_ARGS= BLASLDFLAGS="-lopenblas" ALL_TARGET= out/libscsdir.so out/libscsindir.so post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so .include Index: head/math/sdpa/Makefile =================================================================== --- head/math/sdpa/Makefile (revision 524641) +++ head/math/sdpa/Makefile (revision 524642) @@ -1,65 +1,65 @@ # Created by: NAKATA, Maho # $FreeBSD$ PORTNAME= sdpa PORTVERSION= 7.3.8 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= math MASTER_SITES= SF/${PORTNAME}/${PORTNAME} \ DEBIAN/pool/main/m/mumps:mumps DISTFILES= ${PORTNAME}_${PORTVERSION}${EXTRACT_SUFX} \ mumps_4.10.0.dfsg.orig.tar.gz:mumps DIST_SUBDIR= sdpa EXTRACT_ONLY= ${PORTNAME}_${PORTVERSION}${EXTRACT_SUFX} MAINTAINER= ports@FreeBSD.org COMMENT= Very efficient SDP (semidefinite programming) solver LICENSE= GPLv2 # (or later) LICENSE_FILE= ${WRKSRC}/COPYING USES= fortran gmake GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \ --with-lapack="-L${LOCALBASE}/lib ${LAPACKLIB}" PORTDOCS= ${MANUALFILE} PLIST_FILES= bin/sdpa %%DATADIR%%/param.sdpa OPTIONS_DEFINE= DOCS OPTIONS_SINGLE= BLAS OPTIONS_SINGLE_BLAS= ATLAS GOTOBLAS REFERENCE OPTIONS_DEFAULT= REFERENCE ATLAS_USES= blaslapack:atlas DOCS_DISTFILES= ${MANUALFILE} GOTOBLAS_DESC= GotoBLAS blas implementation GOTOBLAS_USES= blaslapack:gotoblas REFERENCE_DESC= Reference blas implementation REFERENCE_USES= blaslapack MANUALFILE= sdpa.7.1.1.manual.20080618.pdf post-extract: @(cd ${DISTDIR}/${DIST_SUBDIR} && ${PAX} -rw \ mumps_4.10.0.dfsg.orig.tar.gz ${WRKSRC}/mumps) post-patch: # Register missing target dependency to unbreak parallel builds @${REINPLACE_CMD} -e 's,^sdpa_DEPENDENCIES =,& $$(lib_LIBRARIES),' \ ${WRKSRC}/Makefile.in .for i in sdpa.1 sdpa_exe.cpp @${REINPLACE_CMD} -e \ 's|/usr/share/sdpa/|${DATADIR}/|' ${WRKSRC}/${i} .endfor do-install: ${INSTALL_PROGRAM} ${WRKSRC}/sdpa ${STAGEDIR}${PREFIX}/bin @${MKDIR} ${STAGEDIR}${DATADIR} ${INSTALL_DATA} ${WRKSRC}/param.sdpa ${STAGEDIR}${DATADIR} post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/${MANUALFILE} ${STAGEDIR}${DOCSDIR} .include Index: head/math/suitesparse/Makefile =================================================================== --- head/math/suitesparse/Makefile (revision 524641) +++ head/math/suitesparse/Makefile (revision 524642) @@ -1,71 +1,71 @@ # Created by: Maho Nakata # $FreeBSD$ PORTNAME= suitesparse DISTVERSION= 5.4.0 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= math MASTER_SITES= http://faculty.cse.tamu.edu/davis/SuiteSparse/ \ https://mirror.sobukus.de/files/src/suitesparse/ DISTNAME= SuiteSparse-${PORTVERSION} MAINTAINER= fortran@FreeBSD.org COMMENT= SuiteSparse is a set of packages for sparse matrices calculation LICENSE= GPLv2 LGPL21 LICENSE_COMB= dual LIB_DEPENDS= libmetis.so:math/metis USES= cmake:insource compiler:${OPENMP}c++11-lib fortran gmake localbase:ldflags USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/SuiteSparse ALL_TARGET= library # skip demos INSTALL_TARGET= install # skip USES=cmake MAKE_ENV= BLAS="${BLASLIB}" LAPACK="${LAPACKLIB}" \ MY_METIS_LIB="-lmetis" \ JOBS="${MAKE_JOBS_NUMBER}" \ CMAKE_OPTIONS='${CMAKE_ARGS}' \ INSTALL="${STAGEDIR}${PREFIX}" \ INSTALL_DOC="${STAGEDIR}${DOCSDIR}" \ INSTALL_INCLUDE="${STAGEDIR}${PREFIX}/include/${PORTNAME}" CMAKE_ARGS= -DCMAKE_INSTALL_INCLUDEDIR:PATH="include/${PORTNAME}" LDFLAGS+= -L${WRKSRC}/lib # prevent linking with shared libs from the preinstalled older versions CONFLICTS_INSTALL= mongoose plinkseq # bin/mongoose OPTIONS_DEFINE= DOCS OPENMP TBB OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= ATLAS GOTOBLAS NETLIB OPENBLAS OPTIONS_DEFAULT= OPENBLAS OPENMP TBB ATLAS_USES= blaslapack:atlas GOTOBLAS_DESC= Goto blas implementation GOTOBLAS_USES= blaslapack:gotoblas NETLIB_USES= blaslapack:netlib OPENBLAS_USES= blaslapack:openblas OPENMP_USES= compiler:openmp OPENMP_MAKE_ENV_OFF= CFOPENMP= .if !exists(/usr/include/omp.h) # XXX ports/199603 + ports/210337 OPENMP_VARS= OPENMP=gcc- .endif TBB_DESC= Intel threading building blocks TBB_LIB_DEPENDS= libtbb.so:devel/tbb TBB_MAKE_ENV= TBB="-ltbb" SPQR_CONFIG="-DHAVE_TBB" post-extract: ${RM} -r ${WRKSRC}/metis-* do-configure: # skip USES=cmake post-patch-OPENMP-off: @${REINPLACE_CMD} -e '/find_package.*OpenMP/d' \ ${WRKSRC}/GraphBLAS/CMakeLists.txt post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/* ${STAGEDIR}${PREFIX}/lib/*.so .include Index: head/math/sundials/Makefile =================================================================== --- head/math/sundials/Makefile (revision 524641) +++ head/math/sundials/Makefile (revision 524642) @@ -1,71 +1,71 @@ # $FreeBSD$ PORTNAME= sundials DISTVERSION= 3.1.2 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= math MASTER_SITES= https://computation.llnl.gov/projects/sundials/download/ MAINTAINER= yuri@FreeBSD.org COMMENT= SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE USES= cmake:noninja python:build # ninja doesn't support fortran USE_LDCONFIG= yes CMAKE_ARGS= -DPTHREAD_ENABLE:BOOL=ON \ -DBUILD_STATIC_LIBS:BOOL=OFF PLIST_SUB= SHL3=${DISTVERSION} SHL1=${DISTVERSION:R:R} SHLX3=1.1.2 SHLX1=1 OPTIONS_DEFINE= BLAS EXAMPLES LAPACK MPI # OPENMP detection is broken in cmake: https://gitlab.kitware.com/cmake/cmake/issues/17474 OPTIONS_DEFAULT= LAPACK OPTIONS_GROUP= VECTORS OPTIONS_GROUP_VECTORS= HYPRE PETSC VECTORS_DESC= Alternative vector libraries BLAS_DESC= Enable BLAS support HYPRE_DESC= HYPRE vectors support (also enables MPI) LAPACK_DESC= Use Lapack linear algebra (sets SUNDIALS_INDEX_TYPE=int32) PETSC_DESC= PETSc vectors support (also enables MPI) OPTIONS_SUB= yes BLAS_CMAKE_BOOL= BLAS_ENABLE BLAS_USES= blaslapack:openblas fortran BLAS_CMAKE_ON= -DFREEBSD_GCC_DIR:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT:S/.//} # assumes that fortran:gcc is used EXAMPLES_CMAKE_BOOL= EXAMPLES_ENABLE_C EXAMPLES_ENABLE_CXX EXAMPLES_ENABLE_F77 EXAMPLES_ENABLE_F90 EXAMPLES_CMAKE_ON= -DEXAMPLES_INSTALL_PATH=${EXAMPLESDIR} HYPRE_CMAKE_BOOL= HYPRE_ENABLE HYPRE_CMAKE_ON= -DHYPRE_INCLUDE_DIR=${LOCALBASE}/include \ -DHYPRE_LIBRARY_DIR=${LOCALBASE}/lib HYPRE_LIB_DEPENDS= libHYPRE.so:science/hypre HYPRE_IMPLIES= MPI HYPRE_PREVENTS= LAPACK # error: Incompatible sunindextype for LAPACK; disable LAPACK and rebuild LAPACK_USES= blaslapack:openblas fortran LAPACK_CMAKE_BOOL= LAPACK_ENABLE LAPACK_CMAKE_ON= -DSUNDIALS_INDEX_TYPE:STRING=int32_t \ -DFREEBSD_GCC_DIR:STRING=${LOCALBASE}/lib/gcc${GCC_DEFAULT:S/.//} # assumes that fortran:gcc is used MPI_CMAKE_ON= -DMPI_ENABLE:BOOL=ON MPI_LIB_DEPENDS= libmpich.so:net/mpich PETSC_CMAKE_BOOL= PETSC_ENABLE PETSC_CMAKE_ON= -DPETSC_INCLUDE_DIR=${LOCALBASE}/include \ -DPETSC_LIBRARY_DIR=${LOCALBASE}/lib PETSC_LIB_DEPENDS= libpetsc.so:science/PETSc PETSC_IMPLIES= MPI PETSC_PREVENTS= LAPACK # error: Incompatible sunindextype for LAPACK; disable LAPACK and rebuild PORTEXAMPLES= * post-patch: @${FIND} ${WRKSRC}/examples -name "*.c" -o -name "*.cpp" | ${XARGS} ${REINPLACE_CMD} -E 's/"(ESYM|FSYM)"/" \1 "/g' post-install: @${RM} ${STAGEDIR}${PREFIX}/include/sundials/LICENSE .include Index: head/math/superlu/Makefile =================================================================== --- head/math/superlu/Makefile (revision 524641) +++ head/math/superlu/Makefile (revision 524642) @@ -1,71 +1,71 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= superlu PORTVERSION= 5.2.1 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= math MASTER_SITES= http://crd-legacy.lbl.gov/~xiaoye/SuperLU/ \ http://crd-legacy.lbl.gov/~xiaoye/:doc DISTNAME= ${PORTNAME}_${PORTVERSION} DIST_SUBDIR= ${PORTNAME} MAINTAINER= robert.ayrapetyan@gmail.com COMMENT= Library of routines for performing sparse factorization LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/License.txt USES= cmake fortran USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/SuperLU_${PORTVERSION} PLIST_SUB= P_VERSION="${PORTVERSION}" P_VER="${PORTVERSION:R:R}" CMAKE_ON= USE_XSDK_DEFAULTS CMAKE_OFF= enable_tests enable_examples PORTDOCS= * OPTIONS_DEFINE= DOCS OPTIONS_SINGLE= BLAS OPTIONS_SINGLE_BLAS= ATLAS GOTOBLAS OPENBLAS REFERENCE OPTIONS_DEFAULT= REFERENCE ATLAS_USES= blaslapack:atlas ATLAS_CMAKE_ON= -DBLA_VENDOR:STRING="ATLAS" DOCS_DISTFILES= ${DISTNAME}${EXTRACT_SUFX} \ ${SLU_DOCS:S/$/:doc/} DOCS_EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} GOTOBLAS_DESC= GotoBLAS blas implementation GOTOBLAS_USES= blaslapack:gotoblas GOTOBLAS_CMAKE_ON= -DBLA_VENDOR:STRING="Goto" OPENBLAS_DESC= OpenBLAS blas implementation OPENBLAS_USES= blaslapack:openblas OPENBLAS_CMAKE_ON= -DBLA_VENDOR:STRING="OpenBLAS" REFERENCE_DESC= Reference blas implementation REFERENCE_USES= blaslapack REFERENCE_CMAKE_ON= -DBLA_VENDOR:STRING="Generic" SLU_DOCS= SLU_general.ps.gz simax-29176.pdf post-patch: @${REINPLACE_CMD} -e \ '/CMAKE_C_FLAGS_RELEASE/s|^|#|' ${WRKSRC}/CMakeLists.txt @${REINPLACE_CMD} -e \ '/FFLAGS/s|FATAL_ERROR|WARNING|' ${WRKSRC}/cmake/XSDKDefaults.cmake post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${DISTDIR}/${DIST_SUBDIR} && ${INSTALL_DATA} ${SLU_DOCS} \ ${STAGEDIR}${DOCSDIR}) (cd ${WRKSRC}/DOC && ${COPYTREE_SHARE} "html ug.pdf" \ ${STAGEDIR}${DOCSDIR}) do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -Denable_tests:BOOL=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include Index: head/math/taucs/Makefile =================================================================== --- head/math/taucs/Makefile (revision 524641) +++ head/math/taucs/Makefile (revision 524642) @@ -1,110 +1,110 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= taucs PORTVERSION= 2.2 -PORTREVISION= 22 +PORTREVISION= 23 CATEGORIES= math MASTER_SITES= http://www.tau.ac.il/~stoledo/taucs/${PORTVERSION}/ \ LOCAL/bf DISTNAME= ${PORTNAME} MAINTAINER= ports@FreeBSD.org COMMENT= C library of sparse linear solvers LICENSE= TAUCS LICENSE_NAME= TAUCS License LICENSE_FILE= ${FILESDIR}/TAUCS-license.txt LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept LIB_DEPENDS= libmetis.so:math/metis USES= blaslapack fortran tar:tgz USE_LDCONFIG= yes NO_WRKSUBDIR= yes HAS_CONFIGURE= yes OPTIONS_DEFINE= DOCS .include LDFLAGS+= -L${LOCALBASE}/lib LIBMETIS?= -lmetis MAKE_ENV+= LIBBLAS="${BLASLIB}" LIBLAPACK="${LAPACKLIB}" LIBMETIS="${LIBMETIS}" BINS?= direct iter taucs_run TESTS?= complex stack timer linsolve memory .if ${ARCH} == "sparc64" PICFLAG?= -fPIC .else PICFLAG?= -fpic .endif post-patch: @${REINPLACE_CMD} -e 's/succedd/succeed/' \ ${WRKSRC}/progs/taucs_blas_underscore_test.c @${REINPLACE_CMD} -e 's/SUCCEDD/SUCCEED/' \ ${WRKSRC}/progs/test_linsolve.c post-configure: @${CP} -r ${WRKSRC} ${WRKSRC}_SHARED archives: configure @${PRINTF} "\n\n%s\n\n\n" "Building libtaucs archives:" (cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} \ ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} lib/FreeBSD/libtaucs.a) (cd ${WRKSRC}_SHARED && ${SETENV} ${MAKE_ENV} PICFLAG="${PICFLAG}" \ ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} lib/FreeBSD/libtaucs.a) lib: archives @${PRINTF} "\n\n%s\n\n\n" "Building shared library:" (cd ${WRKSRC}_SHARED/lib/FreeBSD && \ ${FC} ${CFLAGS} ${PICFLAG} ${LDFLAGS} -shared \ -o libtaucs.so.1 -Wl,-x -Wl,-soname,libtaucs.so.1 \ -Wl,--whole-archive libtaucs.a -Wl,--no-whole-archive) ${STRIP_CMD} ${WRKSRC}_SHARED/lib/FreeBSD/libtaucs.so.1 bins: lib @${PRINTF} "\n\n%s\n\n\n" "Building (dynamically-linked) executables:" #for the second pass through WRKSRC_SHARED, use a nonexistent MAKEOBJDIR to #prevent make from entering the obj subdirectories and breaking the build (see, #for example, the description of .OBJDIR in make(1)): (cd ${WRKSRC}_SHARED && \ ${SETENV} ${MAKE_ENV} MAKEOBJDIR="${NONEXISTENT}" \ ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} ${BINS:S|^|bin/FreeBSD/|}) do-build: bins do-install: ${INSTALL_DATA} ${WRKSRC}/lib/FreeBSD/libtaucs.a \ ${STAGEDIR}${PREFIX}/lib ${INSTALL_DATA} ${WRKSRC}_SHARED/lib/FreeBSD/libtaucs.so.1 \ ${STAGEDIR}${PREFIX}/lib (cd ${STAGEDIR}${PREFIX}/lib && ${LN} -s libtaucs.so.1 libtaucs.so) ${INSTALL_DATA} ${WRKSRC}/build/FreeBSD/*.h \ ${STAGEDIR}${PREFIX}/include ${INSTALL_DATA} ${WRKSRC}/src/*.h ${STAGEDIR}${PREFIX}/include (cd ${WRKSRC}_SHARED/bin/FreeBSD && \ ${INSTALL_PROGRAM} ${BINS} ${STAGEDIR}${PREFIX}/bin) do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/*.pdf ${STAGEDIR}${DOCSDIR} do-test: # XXX: building tests fail .for t in ${TESTS} @${PRINTF} "\n%s\n" "Building test_${t}" @cd ${WRKSRC}_SHARED ; ${FC} ${FFLAGS} -Llib/FreeBSD -L./ \ ${LDFLAGS} -o bin/FreeBSD/test_${t} \ `${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_ARGS} -V STDDEFS` \ `${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_ARGS} -V STDINCS` \ progs/test_${t}.c -ltaucs ${LAPACKLIB} ${BLASLIB} ${LIBMETIS} @${PRINTF} "\n%s\n\n\n" "Running test_${t}:" -@cd ${WRKSRC}_SHARED ; \ ${SETENV} LD_LIBRARY_PATH="lib/FreeBSD:/lib:/usr/lib:${LOCALBASE}/lib" \ bin/FreeBSD/test_${t} .endfor .include Index: head/math/tmv/Makefile =================================================================== --- head/math/tmv/Makefile (revision 524641) +++ head/math/tmv/Makefile (revision 524642) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= tmv DISTVERSIONPREFIX= v DISTVERSION= 0.75 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org COMMENT= Fast, intuitive linear algebra library for C++ LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/TMV_LICENSE USES= compiler:openmp gmake blaslapack:netlib localbase USE_GITHUB= yes GH_ACCOUNT= rmjarvis USE_LDCONFIG= yes BUILD_WRKSRC= ${WRKSRC}/src INSTALL_WRKSRC= ${BUILD_WRKSRC} MAKEFILE= ${FILESDIR}/Makefile OPTIONS_DEFINE= DOCS post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${WRKSRC}/doc/TMV_Documentation.pdf ${STAGEDIR}${DOCSDIR} .include Index: head/misc/mxnet/Makefile =================================================================== --- head/misc/mxnet/Makefile (revision 524641) +++ head/misc/mxnet/Makefile (revision 524642) @@ -1,66 +1,66 @@ # $FreeBSD$ PORTNAME= mxnet DISTVERSION= 1.6.0 DISTVERSIONSUFFIX= .rc0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= misc # machine-learning PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/ PATCHFILES+= cbd43cab6eef8362bcb1cc91e59b49045c90444c.patch:-p1 \ 89c180d47b407913f0a9948d6e7f55daa523e7aa.patch:-p1 MAINTAINER= yuri@FreeBSD.org COMMENT= Apache MXNet: Ultra-scalable deep learning framework LICENSE= APACHE20 BUILD_DEPENDS= googletest>0:devel/googletest \ ${LOCALBASE}/include/dnnl.h:math/mkl-dnn LIB_DEPENDS= libdmlc.so:devel/dmlc-core \ liblapack.so:math/lapack \ libomp.so:devel/openmp \ libopenblas.so:math/openblas USES= cmake localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= apache GH_PROJECT= incubator-mxnet GH_TUPLE= apache:incubator-tvm:5d66e7a:tvm/3rdparty/tvm \ dmlc:dlpack:b90e939:dlpack/3rdparty/dlpack USE_LDCONFIG= yes CMAKE_OFF= USE_CUDA USE_CUDNN USE_MKLDNN USE_NCCL ENABLE_CUDA_RTC \ BUILD_CPP_EXAMPLES USE_JEMALLOC USE_MKL_IF_AVAILABLE LDFLAGS+= -pthread -lexecinfo OPTIONS_DEFINE= CPP OPENCV OPTIONS_DEFAULT= CPP OPENCV OPTIONS_SUB= yes CPP_DESC= Install the C++ binding (cpp-package) CPP_CMAKE_BOOL= USE_CPP_PACKAGE CPP_USES= python:build CPP_VARS= BINARY_ALIAS=python=${PYTHON_CMD} OPENCV_CMAKE_BOOL= USE_OPENCV OPENCV_LIB_DEPENDS= libopencv_core.so:graphics/opencv-core \ libopencv_videoio.so:graphics/opencv .include .if ${ARCH} != amd64 && ${ARCH} != i386 CMAKE_OFF+= USE_SSE .endif post-patch: .for lib in mkldnn.h mkldnn_types.h @${RM} ${WRKSRC}/include/mkldnn/${lib} @${LN} -s ${LOCALBASE}/include/dnnl.h ${WRKSRC}/include/mkldnn/${lib} .endfor post-install-CPP-on: # https://github.com/apache/incubator-mxnet/issues/17080 @cd ${STAGEDIR}${PREFIX} && ${RM} include/mxnet-cpp/.gitignore include/mxnet-cpp/CPPLINT.cfg .include Index: head/science/PETSc/Makefile =================================================================== --- head/science/PETSc/Makefile (revision 524641) +++ head/science/PETSc/Makefile (revision 524642) @@ -1,47 +1,47 @@ # Created by: Thierry Thomas # $FreeBSD$ PORTNAME= PETSc DISTVERSION= 3.10.2 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science devel MASTER_SITES= http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ DISTNAME= ${PORTNAME:tl}-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Suite of data structures and routines from Argonne National Laboratory LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libmpich.so:net/mpich USES= blaslapack fortran gmake python:2.7 shebangfix xorg GNU_CONFIGURE= yes CONFIGURE_ARGS= --with-shared-libraries=1 \ --with-mpi-dir=${LOCALBASE} \ ${CONFIGURE_ARGS_${ARCH}} CPPFLAGS="${CPPFLAGS}" \ LDFLAGS="${LDFLAGS}" LIBS="" CONFIGURE_ARGS_amd64= CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2" CONFIGURE_ARGS_i386= CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2" USE_XORG= x11 MAKEFILE= makefile SHEBANG_FILES= lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py lib/petsc/bin/saws/*.bash config/*.py USE_LDCONFIG= yes TEST_TARGET= test BINARY_ALIAS= python=${PYTHON_CMD} LDFLAGS+= ${LOCALBASE}/lib/libmpi.so DATADIR= ${PREFIX}/share/${PORTNAME:tl} PLIST_SUB= SHLIB=${DISTVERSION} SHL=${DISTVERSION:C/\.[0-9]$//} post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpetsc.so.${DISTVERSION} @${FIND} ${STAGEDIR}${PREFIX} -name "*.html" -delete @cd ${STAGEDIR}${PREFIX} && ${RM} -r bin/win32fe lib/petsc/conf/uninstall.py @${REINPLACE_CMD} -i '' -e 's|^PYTHON = .*|PYTHON = ${PYTHON_CMD}|' ${STAGEDIR}${PREFIX}/lib/petsc/conf/petscvariables @${REINPLACE_CMD} -i '' -e 's|#!/.*|#!${PYTHON_CMD}|' ${STAGEDIR}${PREFIX}/lib/petsc/conf/reconfigure-arch-*-c-debug.py @${RM} -r ${STAGEDIR}${DATADIR}/examples # examples are a mess as installed .include Index: head/science/berkeleygw/Makefile =================================================================== --- head/science/berkeleygw/Makefile (revision 524641) +++ head/science/berkeleygw/Makefile (revision 524642) @@ -1,36 +1,36 @@ # $FreeBSD$ PORTNAME= BerkeleyGW DISTVERSION= 2.0.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science MASTER_SITES= https://berkeley.box.com/shared/static/ DISTFILES= wkqu37wu77tll53r8t1soe6ozqja67yy.gz MAINTAINER= yuri@FreeBSD.org COMMENT= Scientific program aimed at the ab initio virtual experimentation LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt LIB_DEPENDS= libfftw3.so:math/fftw3 USES= blaslapack:openblas gmake fortran python shebangfix SHEBANG_GLOB= *.sh *.py *awk WRKSRC= ${WRKDIR}/BGW-${DISTVERSION} BINARY_ALIAS= make=${GMAKE} gcc=${CC} MAKE_ARGS= FREEBSD_GCC_DEFAULT=${GCC_DEFAULT} FREEBSD_PREFIX=${PREFIX} INSTDIR=${STAGEDIR}${PREFIX} OPTIONS_DEFINE= DOCS EXAMPLES EXAMPLES_MAKE_ARGS= INSTALL_EXAMPLES=yes PORTEXAMPLES= * post-patch: @${LN} -s ${WRKSRC}/config/generic.serial.freebsd.mk ${WRKSRC}/arch.mk @${LN} -s ${WRKSRC}/flavor_real.mk ${WRKSRC}/flavor.mk @${FIND} ${WRKSRC} -name "script*" -o -name "*.scr" | ${XARGS} ${REINPLACE_CMD} -i '' 's|#! */bin/bash.*|#!/bin/sh|' .include Index: head/science/chemps2/Makefile =================================================================== --- head/science/chemps2/Makefile (revision 524641) +++ head/science/chemps2/Makefile (revision 524642) @@ -1,29 +1,29 @@ # $FreeBSD$ PORTNAME= CheMPS2 DISTVERSIONPREFIX= v DISTVERSION= 1.8.9 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Spin-adapted implementation of DMRG for ab initio quantum chemistry LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ libsz.so:science/szip USES= blaslapack:openblas cmake fortran USE_GITHUB= yes GH_ACCOUNT= SebWouters USE_LDCONFIG= yes CMAKE_ARGS+= -DSHARED_ONLY:BOOL=ON CMAKE_ARGS+= -DENABLE_TESTS:BOOL=OFF CMAKE_ARGS+= -DENABLE_XHOST:BOOL=OFF # shouldn't optimize the port in case of central build CMAKE_ARGS+= -DENABLE_OPENMP:BOOL=OFF # find_package(OpenMP) is broken since the merge into cmake: bug#223678 CMAKE_ARGS+= -DLAPACK_LIBRARIES="-lopenblas" # can't find it using find_package for some reason .include Index: head/science/code_saturne/Makefile =================================================================== --- head/science/code_saturne/Makefile (revision 524641) +++ head/science/code_saturne/Makefile (revision 524642) @@ -1,111 +1,111 @@ # Created by: thierry@pompo.net # $FreeBSD$ PORTNAME= code_saturne PORTVERSION= 6.0.1 DISTVERSIONPREFIX= v -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science parallel MAINTAINER= thierry@FreeBSD.org COMMENT= EDF's general purpose Computational Fluid Dynamics (CFD) software LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libsysinfo.so:devel/libsysinfo \ libcgns.so:science/cgnslib \ libhdf5.so:science/hdf5 \ libmedC.so:french/med RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ xmgrace:math/grace \ bash:shells/bash \ xterm:x11/xterm USE_GITHUB= yes GH_ACCOUNT= code-saturne USES= autoreconf bison fortran gettext gnome gmake iconv libtool \ pyqt:5 python:3.6+ shebangfix USE_GNOME= libxml2 USE_PYQT= core gui sip widgets xml_build SHEBANG_FILES= install_saturne.py tests/unittests.py bin/*.py build-aux/*.py CPPFLAGS+= -I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2 GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-salome --without-salome-yacs --without-salome-kernel \ --without-salome-gui USE_LDCONFIG= yes BINARY_ALIAS= python=${PYTHON_CMD} \ pyrcc5=pyrcc5-${PYTHON_VER} \ pyuic5=pyuic5-${PYTHON_VER} OPTIONS_DEFINE= DOCS EXAMPLES BATCH BLAS MPI OPTIONS_DEFAULT= BATCH BLAS MPI METIS OPTIONS_RADIO= METIS OPTIONS_RADIO_METIS= METIS PARMETIS BLAS_USES= blaslapack -BLAS_CONFIGURE_ON= --with-blas=yes --with-blas-type=BLAS -BLAS_LIB_DEPENDS= libcblas.so:math/cblas +BLAS_CONFIGURE_ON= --with-blas=yes --with-blas-lib=${LOCALBASE}/lib --with-blas-libs=-lopenblas +BLAS_LIB_DEPENDS= libopenblas.so:math/openblas BATCH_DESC= Use Torque to submit batches BATCH_RUN_DEPENDS= pbs-config:sysutils/torque MPI_LIB_DEPENDS= libmpi.so:net/mpich MPI_CONFIGURE_WITH= mpi METIS_LIB_DEPENDS= libmetis.so:math/metis METIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include" PARMETIS_LIB_DEPENDS= libparmetis.so:math/parmetis PARMETIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include/parmetis" \ --with-metis-lib="${LOCALBASE}/lib/parmetis" PARMETIS_CONFIGURE_ENV= LIBS=-lexecinfo TEST_TARGET= check .if defined(PACKAGE_BUILDING) TERM= vt100 # Force for pointyhat to override su .else TERM?= vt100 # Default value needed for tput in jail or tinderbox .endif .include .if ${ARCH} == "i386" # /wrkdirs/usr/ports/science/code_saturne/work/code_saturne-5.3.0/src/apps/.libs # /libsaturne.so: # undefined reference to `__atomic_compare_exchange' CONFIGURE_ARGS+= --disable-openmp .endif .if ${OPSYS} == FreeBSD && ((${OSREL:R} == 12 && ${OSVERSION} < 1200506) \ || (${OSREL:R} == 11 && ${OSVERSION} < 346296)) BROKEN= at least openmp 8.0.0 final release is needed .endif .if ${PORT_OPTIONS:MDOCS} USE_TEX= tex:build BUILD_DEPENDS+= fig2dev:print/transfig \ doxygen:devel/doxygen \ dot:graphics/graphviz \ sphinx-build-${PYTHON_VER}:textproc/py-sphinx@${PY_FLAVOR} BINARY_ALIAS+= sphinx-build=sphinx-build-${PYTHON_VER} ALL_TARGET= all pdf DOCS= AUTHORS ChangeLog README .endif pre-configure: (cd ${WRKSRC} && ${LS} preprocessor/*/*.c src/*/*.c* | \ ${GREP} -v user_examples > po/POTFILES.in) ${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l ${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h \ -o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y ${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|' \ ${WRKSRC}/Makefile.am post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCS:C|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} post-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} @cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR} .include Index: head/science/dalton/Makefile =================================================================== --- head/science/dalton/Makefile (revision 524641) +++ head/science/dalton/Makefile (revision 524642) @@ -1,37 +1,38 @@ # $FreeBSD$ PORTNAME= dalton DISTVERSION= 2018.2 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Powerful molecular electronic structure program for quantum chemistry LICENSE= LGPL21 LIB_DEPENDS= liblapack.so:math/lapack \ libopenblas.so:math/openblas RUN_DEPENDS= bash:shells/bash USES= cmake:noninja fortran python:build shebangfix SHEBANG_FILES= dalton.in USE_GITLAB= yes GL_COMMIT= 4aa945ecd235fbf67ed0c1609617c553ef40be89 USE_GITHUB= nodefault GL_TUPLE= bingao:gen1int:1e4148ecd676761b3399801acba443925a1fee6b:gen1int/external/gen1int \ dalton:efs:ffc1a2f137fa6e322143bf84be724d9b815e637b:efs/external/efs \ pe-software:pelib-public:ba0ba35e9d8f5663f320fb3de6010fb66106ed80:pelib/external/pelib GH_TUPLE= cstein:qfitlib:fdf3f38:qfitlib/external/qfitlib \ dftlibs:xcfun:177fcd96:xcfun/external/xcfun \ dftlibs:xcint:2d1496f5:xcint/external/xcint BINARY_ALIAS= python=${PYTHON_CMD} post-install: @${MV} ${STAGEDIR}${PREFIX}/${PORTNAME} ${STAGEDIR}${DATADIR} @${REINPLACE_CMD} -i '' 's|%%SCRIPT_DIR%%|${DATADIR}|; s|%%PREFIX%%|${PREFIX}|' ${STAGEDIR}${DATADIR}/${PORTNAME} @${MV} ${STAGEDIR}${DATADIR}/${PORTNAME}* ${STAGEDIR}${PREFIX}/bin/ @cd ${STAGEDIR}${DATADIR} && ${RM} -r tools/CMakeFiles tools/Makefile tools/cmake_install.cmake .include Index: head/science/dlib-cpp/Makefile =================================================================== --- head/science/dlib-cpp/Makefile (revision 524641) +++ head/science/dlib-cpp/Makefile (revision 524642) @@ -1,53 +1,53 @@ # $FreeBSD$ PORTNAME= dlib DISTVERSION= 19.17 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science devel math MASTER_SITES= http://dlib.net/files/ PKGNAMESUFFIX= -cpp MAINTAINER= arrowd@FreeBSD.org COMMENT= Machine learning framework written in C++ LICENSE= BSL LICENSE_FILE= ${WRKSRC}/dlib/LICENSE.txt USES= cmake compiler:c++11-lang pkgconfig tar:bzip2 USE_LDCONFIG= yes OPTIONS_DEFINE= X11 JPEG PNG GIF SQLITE BLASLAPACK PYTHON AVX OPTIONS_DEFAULT= X11 JPEG PNG GIF SQLITE BLASLAPACK_DESC= Use Blas and Lapack libraries from ports AVX_DESC= Use AVX instructions if supported by CPU X11_USES= xorg X11_USE= xorg=x11 X11_CMAKE_OFF= -DDLIB_NO_GUI_SUPPORT=1 JPEG_USES= jpeg JPEG_CMAKE_BOOL= DLIB_JPEG_SUPPORT PNG_LIB_DEPENDS= libpng.so:graphics/png PNG_CMAKE_BOOL= DLIB_PNG_SUPPORT GIF_LIB_DEPENDS= libgif.so:graphics/giflib GIF_CMAKE_BOOL= DLIB_GIF_SUPPORT SQLITE_USES= sqlite SQLITE_CMAKE_BOOL= DLIB_LINK_WITH_SQLITE3 # uses gcc until https://reviews.freebsd.org/D11482 lands BLASLAPACK_USE= gcc=yes BLASLAPACK_USES= blaslapack:openblas fortran BLASLAPACK_CMAKE_OFF= -DDLIB_USE_BLAS=0 -DDLIB_USE_LAPACK=0 -DDLIB_USE_MKL_FFT=0 # for PYTHON_PKGNAMEPREFIX PYTHON_USES= python PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dlib>=0:science/py-dlib@${PY_FLAVOR} PYTHON_NO_DEPENDS= yes AVX_CMAKE_BOOL= USE_AVX_INSTRUCTIONS .include Index: head/science/elmerfem/Makefile =================================================================== --- head/science/elmerfem/Makefile (revision 524641) +++ head/science/elmerfem/Makefile (revision 524642) @@ -1,56 +1,57 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= elmerfem PORTVERSION= 8.4 +PORTREVISION= 1 DISTVERSIONPREFIX= release- CATEGORIES= science MAINTAINER= ports@FreeBSD.org COMMENT= Multiphysical simulation software LICENSE= GPLv2 LIB_DEPENDS= libparpack.so:math/arpack-ng \ libmetis.so:math/metis \ libmpich.so:net/mpich USES= blaslapack:netlib cmake fortran tcl USE_GITHUB= yes GH_ACCOUNT= ElmerCSC USE_LDCONFIG= ${PREFIX}/lib/elmersolver ALL_TARGET= # empty CMAKE_ARGS= -DELMER_FEM_REVISION:STRING=f6bfdc9 CMAKE_ARGS+= -DHAVE_INTTYPES_H=ON .if !defined(MAINTAINER_MODE) CMAKE_ARGS+= -Wno-dev .endif .include .if ${ARCH} == "amd64" CFLAGS_${ARCH}= -fPIC CXXFLAGS_${ARCH}= -fPIC FCFLAGS+= -fPIC FFLAGS+= -fPIC .endif LDFLAGS+= -L${LOCALBASE}/lib FCPPFLAGS+= -ansi post-patch: @${RM} -r ${WRKSRC}/elmergrid/src/metis-5.1.0 @${REINPLACE_CMD} -e 's,"metis.*/metis\.h",,' \ ${WRKSRC}/elmergrid/src/femelmer.c post-install: ${LN} -sf ElmerSolver_mpi ${STAGEDIR}${PREFIX}/bin/ElmerSolver @${STRIP_CMD} ${STAGEDIR}/${PREFIX}/bin/ElmerGrid do-test: @cd ${TEST_WRKSRC} && ctest -C ${CMAKE_BUILD_TYPE} ${_MAKE_JOBS} .include Index: head/science/erkale/Makefile =================================================================== --- head/science/erkale/Makefile (revision 524641) +++ head/science/erkale/Makefile (revision 524642) @@ -1,76 +1,77 @@ # $FreeBSD$ PORTNAME= erkale DISTVERSION= g20200110 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Quantum chemistry program to solve the electronic structure of atoms LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_i386= liberkale_omp.so.0.1.0: undefined reference to `__atomic_compare_exchange' BUILD_DEPENDS= armadillo>0:math/armadillo LIB_DEPENDS= libderiv.so:science/libint \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libint.so:science/libint \ libsz.so:science/szip \ libxc.so:science/libxc RUN_DEPENDS= ${LOCALBASE}/share/erkale/basis/6-21G.gbs:science/erkale-pseudopotentials FLAVORS= serial parallel FLAVOR?= ${FLAVORS:[1]} serial_PKGNAMESUFFIX= -serial USES= cmake:noninja fortran pkgconfig USE_GITHUB= yes GH_ACCOUNT= susilehtola GH_TAGNAME= 0d0c895b0d9bcbcb523e7d7c3a11f590d18827d2 USE_LDCONFIG= yes TEST_TARGET= test CMAKE_ON= BUILD_SHARED_LIBS CMAKE_ARGS= -DERKALE_SYSTEM_LIBRARY=${DATADIR}/basis PLIST_SUB= SUFFIX="${SUFFIX}" .if ${FLAVOR} == serial CMAKE_OFF= USE_OPENMP .else # parallel CMAKE_ON+= USE_OPENMP SUFFIX= _omp LIB_DEPENDS+= libomp.so:devel/llvm${LLVM_DEFAULT} .endif OPTIONS_SINGLE= LINALG OPTIONS_SINGLE_LINALG= NETLIB OPENBLAS OPTIONS_DEFAULT= OPENBLAS LINALG_DESC= Linear algebra library NETLIB_USES= blaslapack:netlib NETLIB_CMAKE_ON= -DLAPACK_LIBRARIES:STRING=-llapack -DBLAS_LIBRARIES:STRING=-lblas NETLIB_LDFLAGS= ${LOCALBASE}/lib/libcblas.so ${LOCALBASE}/lib/liblapack.so ${LOCALBASE}/lib/libblas.so NETLIB_LIB_DEPENDS= libcblas.so:math/cblas OPENBLAS_USES= blaslapack:openblas OPENBLAS_CMAKE_ON= -DLAPACK_LIBRARIES:STRING=-lopenblas -DBLAS_LIBRARIES:STRING=-lopenblas OPENBLAS_LIB_DEPENDS= libopenblas.so:math/openblas # use clang from ports because cmake can't find OpenMP with base clang, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=223678 # have the same compiler for both serial and parallel flavors so that performance numbers can be compared BUILD_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} CPP= clang-cpp${LLVM_DEFAULT} CC= clang${LLVM_DEFAULT} CXX= clang++${LLVM_DEFAULT} .if ${FLAVOR} == parallel post-install: @${MV} ${STAGEDIR}${PREFIX}/include/erkale ${STAGEDIR}${PREFIX}/include/erkale${SUFFIX} @${MV} ${STAGEDIR}${PREFIX}/bin/erkale_bastool ${STAGEDIR}${PREFIX}/bin/erkale_bastool${SUFFIX} .endif .include Index: head/science/fleur/Makefile =================================================================== --- head/science/fleur/Makefile (revision 524641) +++ head/science/fleur/Makefile (revision 524642) @@ -1,65 +1,65 @@ # $FreeBSD$ PORTNAME= fleur DISTVERSION= 0.27-3 # Release 3 of Version 0.27 -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= science MASTER_SITES= http://www.flapw.de/pm/uploads/FLEUR/ DISTNAME= fleurMaXR${DISTVERSION:C/.*-//} MAINTAINER= yuri@FreeBSD.org COMMENT= FLAPW code for atomic computations in quantum chemistry and physics LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN= Fails to build with cmake-3.16.0 LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake:noninja fortran gnome localbase:ldflags tar:tgz USE_GNOME= libxml2 FFLAGS= -I${LOCALBASE}/include WRKSRC= ${WRKDIR}/${PORTNAME} OPTIONS_DEFINE= HDF5 MPI SCALAPACK ELPA WANNIER OPTIONS_DEFAULT= MPI SCALAPACK ELPA WANNIER HDF5_CONFIGURE_ENV= FLEUR_USE_HDF5=1 HDF5_ROOT=${LOCALBASE}/lib HDF5_CONFIGURE_ENV_OFF= FLEUR_USE_HDF5=0 HDF5_CMAKE_ON= -DHDF5_INCLUDE_DIRS=${LOCALBASE}/include HDF5_LDFLAGS= -lhdf5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_BROKEN= Missing hdf5.mod in hdf5 MPI_CONFIGURE_ENV= FLEUR_USE_MPI=1 MPI_CONFIGURE_ENV_OFF= FLEUR_USE_MPI=0 MPI_LDFLAGS= -lmpich -lmpifort MPI_LIB_DEPENDS= libmpich.so:net/mpich MPI_PLIST_FILES= bin/fleur_MPI SCALAPACK_DESC= Use the ScaLAPACK Scalable LAPACK library SCALAPACK_CMAKE_BOOL= FREEBSD_USE_SCALAPACK SCALAPACK_LDFLAGS= -lscalapack SCALAPACK_LIB_DEPENDS= libscalapack.so:math/scalapack SCALAPACK_IMPLIES= MPI ELPA_DESC= Use libelpa, Eigenvalue SoLver for Petaflop Applications ELPA_CMAKE_BOOL= FREEBSD_USE_ELPA ELPA_VARS= FFLAGS+=-I${LOCALBASE}/include/elpa-2018.05.001/modules ELPA_LDFLAGS= -lelpa ELPA_LIB_DEPENDS= libelpa.so:math/elpa ELPA_IMPLIES= MPI WANNIER_DESC= Use Wannier library WANNIER_CONFIGURE_ENV= FLEUR_USE_WANNIER=1 WANNIER_CONFIGURE_ENV_OFF= FLEUR_USE_WANNIER=0 WANNIER_LDFLAGS= -lwannier WANNIER_LIB_DEPENDS= libwannier.so:science/wannier90 PLIST_FILES= bin/fleur \ bin/inpgen .include Index: head/science/gamess-us/Makefile =================================================================== --- head/science/gamess-us/Makefile (revision 524641) +++ head/science/gamess-us/Makefile (revision 524642) @@ -1,91 +1,91 @@ # $FreeBSD$ PORTNAME= gamess DISTVERSION= 20181013 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science PKGNAMESUFFIX= -us # "US" fork DISTNAME= gamess-current MAINTAINER= yuri@FreeBSD.org COMMENT= General Atomic and Molecular Electronic Structure System (US) LICENSE= GAMESS_LICENSE LICENSE_NAME= GAMESS User License Agreement LICENSE_FILE= ${FILESDIR}/license.txt LICENSE_PERMS= # none ONLY_FOR_ARCHS= amd64 i386 ONLY_FOR_ARCHS_REASON= only implemented for 64 and 32 bit Intel architectures BROKEN_i386= Integer too big for its kind at (1) (in file quanpo.f:16518:34) USES= fortran gmake WRKSRC= ${WRKDIR}/gamess BINARY_ALIAS= gcc=${CC} gfortran=gfortran${GCC_DEFAULT} GAMES_VERNO= 00 GAMES_ENV= GMS_PATH=${WRKSRC} GMS_BUILD_DIR=${WRKSRC} GMS_TARGET=${ARCH:S/amd64/linux64/:S/i386/linux32/} \ GMS_FORTRAN=gfortran GMS_GFORTRAN_VERNO=7.3 \ GMS_VERSION=${GAMES_VERNO} GMS_BUILD_PATH=${WRKSRC} \ GMS_OPENMP=false GMS_BG_MODEL="" GMS_SUN_OS_VERNO="" GMS_MAC_OSX_VERNO="" \ GMS_IFORT_VERNO="" GMS_SUN_FORT_VERNO="" GMS_L64_OPT="" GMS_MATHLIB="${GMS_MATHLIB}" GMS_MATHLIB_PATH=${LOCALBASE}/lib \ GMS_MKL_VERNO="" GMS_DDI_COMM="sockets" GMS_MPI_LIB="" GMS_MPI_PATH="" GMS_MVAPICH2_VERNO="" \ GMS_OFED_PATH="" GMS_ARMCI_PATH="" GMS_MSUCC="" GMS_LIBCCHEM="" GMS_PHI="" GMS_SHMTYPE="posix" PLIST_SUB+= GAMES_VERNO=${GAMES_VERNO} SUB_LIST+= GAMES_VERNO=${GAMES_VERNO} SUB_FILES= pkg-message OPTIONS_RADIO= MATHLIB OPTIONS_RADIO_MATHLIB= ATLAS OPENBLAS OPTIONS_DEFAULT= OPENBLAS MATHLIB_DESC= Math library ATLAS_VARS= GMS_MATHLIB=atlas ATLAS_LIB_DEPENDS= libatlas.so:math/atlas OPENBLAS_VARS= GMS_MATHLIB=openblas OPENBLAS_LIB_DEPENDS= libopenblas.so:math/openblas .include # Check for gamess sources and prompt how to download them .if !exists(${DISTDIR}/${DISTNAME}${EXTRACT_SUFX}) IGNORE= license restrictions require registration and manual fetching of the distribution\ source. Please visit https://www.msg.chem.iastate.edu/gamess/License_Agreement.html\ with a browser. You will be required to agree to the license terms, enter your e-mail\ address, check any box under "Source Code Distributions", and submit your download request.\ Once you download the file ${DISTFILES}, please put it into ${DISTDIR}/${DISTFILES} and\ run 'make' again .endif do-configure: @cd ${WRKSRC} && \ ${SETENV} ${MAKE_ENV} ${GAMES_ENV} ./config do-build: @cd ${WRKSRC}/ddi && ${SETENV} ${MAKE_ENV} ./compddi && ${MV} ddikick.x .. @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ./compall @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ./lked gamess ${GAMES_VERNO} do-install: ${INSTALL_SCRIPT} ${WRKSRC}/rungms ${STAGEDIR}${PREFIX}/bin @${REINPLACE_CMD} -i '' 's|^set GMSPATH=.*|set GMSPATH=${DATADIR}|' ${STAGEDIR}${PREFIX}/bin/rungms @${MKDIR} ${STAGEDIR}${DATADIR} ${INSTALL_PROGRAM} ${WRKSRC}/gamess.${GAMES_VERNO}.x ${STAGEDIR}${DATADIR} ${INSTALL_PROGRAM} ${WRKSRC}/ddikick.x ${STAGEDIR}${DATADIR} ${INSTALL_SCRIPT} ${WRKSRC}/gms-files.csh ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${DATADIR}/tools ${INSTALL_SCRIPT} ${WRKSRC}/tools/remd.csh ${STAGEDIR}${DATADIR}/tools/remd.csh cd ${WRKSRC} && ${COPYTREE_SHARE} auxdata ${STAGEDIR}${DATADIR}/ do-test: @${REINPLACE_CMD} -i '' 's|^set GMSPATH=.*|set GMSPATH=${WRKSRC}|' ${WRKSRC}/rungms @cd ${WRKSRC} && \ ${MKDIR} ../gamess-devv && \ ${SETENV} ${MAKE_ENV} ./runall ${GAMES_VERNO} && \ ${SETENV} ${MAKE_ENV} tests/standard/checktst .include Index: head/science/gromacs/Makefile =================================================================== --- head/science/gromacs/Makefile (revision 524641) +++ head/science/gromacs/Makefile (revision 524642) @@ -1,96 +1,97 @@ # Created by: Stephen Montgomery-Smith # $FreeBSD$ PORTNAME= gromacs DISTVERSION= 2020 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ MAINTAINER= yuri@FreeBSD.org COMMENT= Compute molecular dynamics LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_i386= undefined reference to `__atomic_load' and `__atomic_compare_exchange' BUILD_DEPENDS= boost-libs>=1.44:devel/boost-libs LIB_DEPENDS= libhwloc.so:devel/hwloc USES= cmake compiler:c++14-lang fortran gnome perl5 pkgconfig shebangfix xorg SHEBANG_FILES= admin/*.sh scripts/*.pl scripts/*.sh src/gromacs/selection/*.sh bash_CMD= ${SH} USE_GNOME= libxml2 CMAKE_OFF= GMX_USE_RDTSCP \ USE_PYTHON_SCRIPTS USE_LDCONFIG= yes OPTIONS_DEFINE= ATLAS FLOAT OPENCL OPENMP SIMD X11 OPTIONS_SINGLE= MP OPTIONS_SINGLE_MP= NOMP MPICH OPENMPI THREAD_MPI OPTIONS_DEFAULT= FLOAT OPENMP THREAD_MPI X11 OPTIONS_SUB= yes ATLAS_DESC= Use ATLAS for BLAS and LAPACK ATLAS_USES= blaslapack:atlas ATLAS_USES_OFF= blaslapack ATLAS_CMAKE_ON= -DBLAS_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libcblas.so;${LOCALBASE}/lib/libf77blas.so" \ -DLAPACK_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libalapack.so" ATLAS_CMAKE_OFF= -DBLAS_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libblas.so" \ -DLAPACK_LIBRARIES:FILEPATH="${LOCALBASE}/lib/liblapack.so" FLOAT_DESC= Use single instead of double precision FLOAT_BUILD_DEPENDS= fftw3>0:math/fftw3 FLOAT_LIB_DEPENDS= libfftw3f.so:math/fftw3-float FLOAT_LIB_DEPENDS_OFF= libfftw3.so:math/fftw3 FLOAT_CMAKE_ON= -DGMX_DOUBLE:BOOL=OFF FLOAT_CMAKE_OFF= -DGMX_DOUBLE:BOOL=ON FLOAT_PLIST_SUB= SUFFIX_D="" FLOAT_PLIST_SUB_OFF= SUFFIX_D="_d" OPENCL_CMAKE_BOOL= GMX_USE_OPENCL GMX_GPU OPENCL_LIB_DEPENDS= libOpenCL.so:devel/ocl-icd OPENMP_USES= compiler:openmp OPENMP_CMAKE_ON= -DGMX_CXX11:BOOL=OFF OPENMP_CMAKE_OFF= -DGMX_OPENMP:BOOL=OFF OPENMP_LIB_DEPENDS= libomp.so:devel/openmp SIMD_CMAKE_OFF= -DGMX_SIMD:STRING="None" X11_USE= XORG=ice,sm,xext,x11 X11_CMAKE_BOOL= GMX_X11 MP_DESC= Multiprocessing NOMP_DESC= No multiprocessing support NOMP_PLIST_SUB= SUFFIX_MPI="" MPICH_DESC= Parallel processing support via MPICH MPICH_LIB_DEPENDS= libmpich.so:net/mpich MPICH_CMAKE_ON= -DGMX_MPI:BOOL=ON \ -DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/bin/mpicc" MPICH_PLIST_SUB= SUFFIX_MPI="_mpi" OPENMPI_BUILD_DEPENDS= openmpi>0:net/openmpi OPENMPI_RUN_DEPENDS= openmpi>0:net/openmpi OPENMPI_CMAKE_ON= -DGMX_MPI:BOOL=ON \ -DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicc" OPENMPI_PLIST_SUB= SUFFIX_MPI="_mpi" THREAD_MPI_DESC= Build a thread-MPI-based multithreaded version of GROMACS THREAD_MPI_CMAKE_BOOL= GMX_THREAD_MPI THREAD_MPI_PLIST_SUB= SUFFIX_MPI="" post-patch: @${FIND} ${WRKSRC} -name "CMakeLists.txt" | ${XARGS} \ ${REINPLACE_CMD} -e \ 's|share/man|man| ; \ /pkgconfig/s|LIB_INSTALL_DIR}|CMAKE_INSTALL_PREFIX}/libdata|' @${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \ 's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \ s|LDLIB}/pkgconfig|LDLIB}/../libdata/pkgconfig|' @${REINPLACE_CMD} -e '/CMAKE_REQUIRED_LIBRARIES/d' \ ${WRKSRC}/cmake/gmxTestdlopen.cmake .include Index: head/science/harminv/Makefile =================================================================== --- head/science/harminv/Makefile (revision 524641) +++ head/science/harminv/Makefile (revision 524642) @@ -1,24 +1,24 @@ # Created by: Stas Timokhin # $FreeBSD$ PORTNAME= harminv PORTVERSION= 1.3.1 -PORTREVISION= 18 +PORTREVISION= 19 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/harminv/ MAINTAINER= devel@stasyan.com COMMENT= Solver of harmonic inversion LIB_DEPENDS= libguile-2.2.so:lang/guile2 USES= blaslapack fortran gmake libtool pathfix GNU_CONFIGURE= yes USE_GCC= yes CPPFLAGS+= -I${LOCALBASE}/include -fPIC LD_LIBRARY_PATH= -L${LOCALBASE}/lib -L/usr/lib LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ENV+= LD_LIBRARY_PATH="${LD_LIBRARY_PATH}" USE_LDCONFIG= yes .include Index: head/science/hypre/Makefile =================================================================== --- head/science/hypre/Makefile (revision 524641) +++ head/science/hypre/Makefile (revision 524642) @@ -1,76 +1,77 @@ # Created by: Pedro Giffuni # $FreeBSD$ PORTNAME= hypre DISTVERSIONPREFIX= v DISTVERSION= 2.18.2 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Scalable Linear Solvers and Multigrid Methods LICENSE= APACHE20 MIT LICENSE_COMB= dual LICENSE_FILE_APACHE20= ${WRKSRC}/../LICENSE-APACHE LICENSE_FILE_MIT= ${WRKSRC}/../LICENSE-MIT BROKEN_powerpc64= fails to compile: ./DistributedMatrixPilutSolver.h:97:20: expected ')' before '->' token USES= blaslapack fortran gmake localbase # gmake is only for the 'test' target USE_GITHUB= yes GH_ACCOUNT= hypre-space USE_LDCONFIG= yes WRKSRC_SUBDIR= src HAS_CONFIGURE= yes CONFIGURE_ARGS= --with-blas --with-blas-lib=${BLASLIB} \ --with-lapack --with-lapack-lib=${LAPACKLIB} \ --enable-shared OPTIONS_DEFINE= DOCS OPTIONS_SINGLE= MPI OPTIONS_SINGLE_MPI= NOMPI MPICH OPENMPI OPTIONS_DEFAULT= MPICH NOMPI_DESC= Build without parallel processing support NOMPI_CONFIGURE_ON= --without-MPI MPICH_DESC= Parallel processing support via MPICH MPICH_LIB_DEPENDS= libmpich.so:net/mpich MPICH_CONFIGURE_ENV= CC=${LOCALBASE}/bin/mpicc CXX=${LOCALBASE}/bin/mpicxx MPICH_CONFIGURE_WITH= MPI-include=${LOCALBASE}/include \ MPI-lib-dirs=${LOCALBASE}/lib OPENMPI_LIB_DEPENDS= libmpi.so:net/openmpi OPENMPI_CONFIGURE_ENV= CC=${LOCALBASE}/mpi/openmpi/bin/mpicc \ CXX=${LOCALBASE}/mpi/openmpi/bin/mpicxx OPENMPI_CONFIGURE_WITH= MPI-include=${LOCALBASE}/mpi/openmpi/include \ MPI-lib-dirs=${LOCALBASE}/mpi/openmpi/lib TEST_TARGET= check SHL3= ${PORTVERSION} SHL2= ${SHL3:R} SHL1= ${SHL2:R} PORTDOCS= * post-patch: # Avoid conflict with C++20 by ignoring <...> under WRKSRC @${REINPLACE_CMD} -i .c++20 '/utilities/s/-I/-iquote/' \ ${WRKSRC}/FEI_mv/*/Makefile do-install: ${INSTALL_DATA} ${WRKSRC}/hypre/include/* ${STAGEDIR}${PREFIX}/include ${INSTALL_LIB} ${WRKSRC}/hypre/lib/libHYPRE-${SHL3}.so \ ${STAGEDIR}${PREFIX}/lib/libHYPRE.so.${SHL2} ${RLN} ${STAGEDIR}${PREFIX}/lib/libHYPRE.so.${SHL2} \ ${STAGEDIR}${PREFIX}/lib/libHYPRE.so.${SHL1} ${RLN} ${STAGEDIR}${PREFIX}/lib/libHYPRE.so.${SHL2} \ ${STAGEDIR}${PREFIX}/lib/libHYPRE.so post-install-DOCS-on: ${MKDIR} ${STAGEDIR}${DOCSDIR} ${COPYTREE_SHARE} ${WRKSRC}/docs/usr-manual ${STAGEDIR}${DOCSDIR} .include Index: head/science/iboview/Makefile =================================================================== --- head/science/iboview/Makefile (revision 524641) +++ head/science/iboview/Makefile (revision 524642) @@ -1,31 +1,31 @@ # Created by: Johannes Dieterich # $FreeBSD$ PORTNAME= iboview PORTVERSION= 20150427 -PORTREVISION= 20 +PORTREVISION= 21 CATEGORIES= science MASTER_SITES= http://www.iboview.org/bin/ DISTNAME= ibo-view.20150427 MAINTAINER= jmd@FreeBSD.org COMMENT= Program for analyzing molecular electronic structure LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= boost-libs>=0:devel/boost-libs RUN_DEPENDS= boost-libs>=0:devel/boost-libs ONLY_FOR_ARCHS= amd64 USES= blaslapack:openblas fortran gl qmake:outsource qt:5 tar:bz2 USE_GL= gl glu USE_QT= buildtools_build core gui widgets opengl script svg PLIST_FILES= bin/iboview do-install: ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iboview ${STAGEDIR}${PREFIX}/bin .include Index: head/science/lammps/Makefile =================================================================== --- head/science/lammps/Makefile (revision 524641) +++ head/science/lammps/Makefile (revision 524642) @@ -1,75 +1,76 @@ # $FreeBSD$ PORTNAME= lammps PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/} +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Classical molecular dynamics code with a focus on materials modeling LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= undefined reference to `__atomic_load' CONFLICTS_BUILD= ga # conflicts with include/error.h, already fixed in the head USES= blaslapack:openblas cmake:noninja eigen:3 fortran localbase:ldflags shebangfix USE_GITHUB= yes GH_TAGNAME= patch_24Jan2020 SHEBANG_GLOB= *.sh *.bash SHEBANG_FILES= lib/kokkos/bin/nvcc_wrapper CMAKE_SOURCE_PATH= ${WRKSRC}/cmake CMAKE_ARGS= -DBLA_VENDOR:STRING="OpenBLAS" ${CMAKE_ARGS_${CHOSEN_COMPILER_TYPE}} CMAKE_ARGS_gcc= -DBUILD_OMP:BOOL=false OPTIONS_DEFINE= JPEG PNG GZIP FFMPEG VORONOI LATTE OPTIONS_DEFINE_clang= OPENMP OPTIONS_GROUP= PARALLEL OPTIONS_GROUP_PARALLEL= MPI ${OPTIONS_DEFINE_${CHOSEN_COMPILER_TYPE}} OPTIONS_DEFAULT= MPI JPEG PNG GZIP FFMPEG VORONOI LATTE ${OPTIONS_DEFAULT_${CHOSEN_COMPILER_TYPE}} OPTIONS_DEFAULT_clang= OPENMP PARALLEL_DESC= Enable parallelizations: MPI_CMAKE_BOOL= BUILD_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi MPI_USES= compiler:c11 FFMPEG_BUILD_DEPENDS= ffmpeg:multimedia/ffmpeg FFMPEG_RUN_DEPENDS= ffmpeg:multimedia/ffmpeg JPEG_CMAKE_BOOL= WITH_JPEG JPEG_USES= jpeg PNG_CMAKE_BOOL= WITH_PNG PNG_LIB_DEPENDS= libpng.so:graphics/png GZIP_CMAKE_BOOL= WITH_GZIP FFMPEG_CMAKE_BOOL= WITH_FFMPEG VORONOI_DESC= Use voro++, Voronoi tessellation package VORONOI_CMAKE_BOOL= PKG_VORONOI VORONOI_LIB_DEPENDS= libvoro++.so:science/voro++ LATTE_DESC= Use LATTE package LATTE_CMAKE_BOOL= PKG_LATTE LATTE_LIB_DEPENDS= liblatte.so:science/latte PORTSCOUT= ignore:1 # due to a special version tagging scheme that this project uses portscout fails to find new versions, watching their GitHub release page instead .include .if ${PORT_OPTIONS:MOPENMP} USES+= localbase CMAKE_ARGS+= -DBUILD_OMP:BOOL=true LIB_DEPENDS+= libomp.so:devel/openmp .endif post-patch: @${REINPLACE_CMD} 's|SHELL = /bin/bash|SHELL = ${LOCALBASE}/bin/bash|' ${WRKSRC}/src/Makefile post-patch-FFMPEG-off: @${REINPLACE_CMD} 's|find_program(FFMPEG_EXECUTABLE|#&|' ${WRKSRC}/cmake/CMakeLists.txt .include Index: head/science/latte/Makefile =================================================================== --- head/science/latte/Makefile (revision 524641) +++ head/science/latte/Makefile (revision 524642) @@ -1,47 +1,47 @@ # $FreeBSD$ PORTNAME= latte DISTVERSIONPREFIX= v DISTVERSION= 1.2.1 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Quantum chemistry: Density functional tight binding molecular dynamics LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE_GPL-2.0 USES= blaslapack:openblas cmake:noninja fortran shebangfix SHEBANG_FILES= tests/run_test.sh USE_GITHUB= yes GH_ACCOUNT= lanl GH_PROJECT= ${PORTNAME:tu} USE_LDCONFIG= yes CMAKE_SOURCE_PATH= ${WRKSRC}/cmake CMAKE_ON= BUILD_SHARED_LIBS CMAKE_ARGS= -DBLA_VENDOR:STRING="OpenBLAS" OPTIONS_DEFINE= DBCSR OPENMP MPI # TODO PROGRESS needs to be ported OPTIONS_DEFAULT= OPENMP MPI DBCSR_DESC= Use distributed block compressed sparse row matrix library DBCSR_CMAKE_BOOL= DBCSR_OPT DBCSR_LIB_DEPENDS= libdbcsr.so:math/dbcsr DBCSR_BROKEN= see https://github.com/lanl/LATTE/issues/92 OPENMP_CMAKE_BOOL= OPENMP OPENMP_LIB_DEPENDS= libomp.so:devel/openmp MPI_CMAKE_BOOL= DO_MPI MPI_LIB_DEPENDS= libmpi.so:net/openmpi MPI_LDFLAGS= ${LOCALBASE}/mpi/openmpi/lib/libmpi_mpifh.so MPI_PLIST_FILES= bin/LATTE_MPI_DOUBLE MPI_PLIST_FILES_OFF= bin/LATTE_DOUBLE PLIST_FILES= lib/liblatte.so CONFLICTS_INSTALL= latte-integrale .include Index: head/science/libcint/Makefile =================================================================== --- head/science/libcint/Makefile (revision 524641) +++ head/science/libcint/Makefile (revision 524642) @@ -1,27 +1,28 @@ # $FreeBSD$ PORTNAME= libcint DISTVERSIONPREFIX= v DISTVERSION= 3.0.19 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= General GTO integrals for quantum chemistry LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas USES= cmake blaslapack:openblas USE_GITHUB= yes GH_ACCOUNT= sunqm USE_LDCONFIG= yes PLIST_FILES= include/cint.h \ include/cint_funcs.h \ lib/libcint.so \ lib/libcint.so.${PORTVERSION:R:R} \ lib/libcint.so.${PORTVERSION} .include Index: head/science/mbdyn/Makefile =================================================================== --- head/science/mbdyn/Makefile (revision 524641) +++ head/science/mbdyn/Makefile (revision 524642) @@ -1,64 +1,65 @@ # Created by: Kay Lehmann # $FreeBSD$ PORTNAME= mbdyn PORTVERSION= 1.7.3 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://www.mbdyn.org/userfiles/downloads/ MAINTAINER= yuri@FreeBSD.org COMMENT= MultiBody Dynamics analysis system LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BROKEN_powerpc= Does not compile on powerpc BUILD_DEPENDS= libatomic_ops>0:devel/libatomic_ops LIB_DEPENDS= libltdl.so:devel/libltdl \ libarpack.so:math/arpack-ng \ libumfpack.so:math/suitesparse GNU_CONFIGURE= yes USES= compiler:c++11-lib fortran gmake libtool:build localbase USE_LDCONFIG= yes CPPFLAGS+= -fpermissive -I${LOCALBASE}/include/suitesparse CONFIGURE_ARGS= --program-prefix='' --enable-multithread --with-mpi=no \ --with-ginac=no INSTALL_TARGET= install-strip OPTIONS_DEFINE= METIS CHACO OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= REFERENCE GOTOBLAS ATLAS OPTIONS_DEFAULT= REFERENCE ATLAS_DESC= ATLAS CHACO_DESC= Enable chaco-support GOTOBLAS_DESC= GotoBLAS2 METIS_DESC= Enable metis-support REFERENCE_DESC= Blas / Lapack ATLAS_CONFIGURE_ON= --with-blas=atlas ATLAS_USES= blaslapack:atlas CHACO_BUILD_DEPENDS= ${LOCALBASE}/lib/libchaco.a:math/chaco CHACO_CONFIGURE_ON= --with-chaco=yes CHACO_CONFIGURE_OFF= --with-chaco=no GOTOBLAS_CONFIGURE_ON= --with-blas=goto --with-goto=goto2 GOTOBLAS_USES= blaslapack:gotoblas METIS_CONFIGURE_ON= --with-metis=yes METIS_CONFIGURE_OFF= --with-metis=no METIS_CPPFLAGS= -I${LOCALBASE}/include/metis METIS_LIB_DEPENDS= libmetis.so:math/metis4 REFERENCE_CONFIGURE_ON= --with-blas=blas REFERENCE_USES= blaslapack:netlib pre-configure: ${REINPLACE_CMD} -e '/try_lapack_LIBS=/s/-llapack/${LAPACKLIB}/' \ -e 's/ -lxerbla//; s/-lcholmod/-lcholmod ${BLASLIB} ${LAPACKLIB} -lsuitesparseconfig/' \ ${WRKSRC}/configure .include Index: head/science/mpqc/Makefile =================================================================== --- head/science/mpqc/Makefile (revision 524641) +++ head/science/mpqc/Makefile (revision 524642) @@ -1,109 +1,109 @@ # Created by: batman # $FreeBSD$ PORTNAME= mpqc PORTVERSION= 2.3.1 -PORTREVISION= 44 +PORTREVISION= 45 CATEGORIES= science parallel MASTER_SITES= SF MAINTAINER= yuri@FreeBSD.org COMMENT= Massively Parallel Quantum Chemistry Program LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= dot:graphics/graphviz LIB_DEPENDS= libint.so:science/libint RUN_DEPENDS= wish:x11-toolkits/tk-wrapper \ dot:graphics/graphviz CONFLICTS_BUILD= ga # devel/ga: it links to libarmci.so, has HAVE_ARMCI defined, and hits some bug USES= fortran gmake libtool localbase perl5 shebangfix tar:bzip2 GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-production \ --enable-shared \ --with-cc-optflags="${CFLAGS}" \ --with-cxx-optflags="${CXXFLAGS}" \ --with-sc-datadir=${DATADIR} ALL_TARGET= default INSTALL_TARGET= install install_devel DESTDIRNAME= installroot SHEBANG_FILES= src/bin/mpqc/ccarunproc src/bin/mpqc/mpqcrunproc USE_LDCONFIG= yes USE_CXXSTD= c++98 # workaround https://github.com/ValeevGroup/mpqc/issues/57 OPTIONS_DEFINE= ATLAS DOXYGEN EXAMPLES ICC MPI OPTIFLAGS OPTIONS_DEFAULT= DOXYGEN MPI OPTIONS_SUB= yes ICC_DESC= Build with ICC compiler instead ATLAS_DESC= Link with ATLAS instead of BLAS OPTIFLAGS_DESC= Build with optimized flags ATLAS_USES= blaslapack:atlas ATLAS_USES_OFF= blaslapack:netlib DOXYGEN_CONFIGURE_ENABLE= doxygen-man DOXYGEN_BUILD_DEPENDS= doxygen:devel/doxygen \ dot:graphics/graphviz ICC_BUILD_DEPENDS= ${LOCALBASE}/intel_cc_80/bin/icc:lang/icc MPI_CONFIGURE_ENABLE= parallel MPI_LIB_DEPENDS= libmpich.so:net/mpich MPI_LDFLAGS= -lmpich # build fails to supply libmpich.so to link OPTIFLAGS_CFLAGS= -ffast-math OPTIFLAGS_CXXFLAGS= -ffast-math .include .if ${PORT_OPTIONS:MICC} CC= ${LOCALBASE}/intel_cc_80/bin/icc CXX= ${LOCALBASE}/intel_cc_80/bin/icpc CFLAGS= -O3 -tpp7 -xMKW -Vaxlib CXXFLAGS= -O3 -tpp7 -xMKW -Vaxlib LIBS+= -lsvml .endif post-patch: @${REINPLACE_CMD} \ -e 's/-lblas/${BLASLIB}/' -e 's/-llapack/${LAPACKLIB}/' \ -e 's/pthread_join(0,0)/pthread_create(0,0,0,0)/' \ -e 's|/usr/bin/wish|${LOCALBASE}/bin/wish|' \ ${WRKSRC}/configure @${REINPLACE_CMD} \ 's|#include |#include <${WRKSRC}/src/lib/chemistry/qc/mbptr12/f77sym.h>|' \ ${WRKSRC}/src/lib/chemistry/qc/mbptr12/blas.h \ ${WRKSRC}/src/lib/chemistry/qc/mbptr12/lapack.h post-configure: # workaround: https://github.com/ValeevGroup/mpqc/issues/56 @${REINPLACE_CMD} -e ' \ s|/\* #undef USING_NAMESPACE_STD \*/|#define USING_NAMESPACE_STD 1|; \ s|/\* #undef HAVE_SGETN \*/|#define HAVE_SGETN 1|' \ ${WRKSRC}/src/lib/scconfig.h do-build-DOXYGEN-on: @(cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS}) ${RM} ${WRKSRC}/doc/man/man1/_* ${WRKSRC}/doc/man/man3/_* do-install-DOXYGEN-on: @(cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} \ install install_man) ${MV} ${STAGEDIR}${PREFIX}/html ${STAGEDIR}${DOCSDIR} do-install-EXAMPLES-on: @(cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} \ install_samples) ${MV} ${STAGEDIR}${PREFIX}/examples/mp2 ${STAGEDIR}${EXAMPLESDIR} ${RMDIR} ${STAGEDIR}${PREFIX}/examples post-install: (cd ${STAGEDIR}${PREFIX}/bin && ${STRIP_CMD} scpr molrender mpqc scls) ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so validate: (cd ${WRKSRC}/src/bin/mpqc/validate && \ ${MAKE_CMD} check0 && \ ${MAKE_CMD} check0_run && \ ${MAKE_CMD} check0_chk) .include Index: head/science/multiwfn/Makefile =================================================================== --- head/science/multiwfn/Makefile (revision 524641) +++ head/science/multiwfn/Makefile (revision 524642) @@ -1,30 +1,30 @@ # $FreeBSD$ PORTNAME= multiwfn DISTVERSIONPREFIX= v DISTVERSION= 3.4.1-0-14 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONSUFFIX= -ge873677 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Multifunctional wavefunction analysis for quantum chemistry LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libopenblas.so:math/openblas RUN_DEPENDS= bash:shells/bash USES= autoreconf gmake fortran shebangfix SHEBANG_GLOB= *.sh SHEBANG_FILES= init/Multiwfn.01 GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= stecue GH_PROJECT= gMultiwfn PLIST_FILES= bin/Multiwfn \ lib/gMultiwfn/Multiwfn .include Index: head/science/opensim-core/Makefile =================================================================== --- head/science/opensim-core/Makefile (revision 524641) +++ head/science/opensim-core/Makefile (revision 524642) @@ -1,55 +1,55 @@ # $FreeBSD$ PORTNAME= OpenSim DISTVERSION= 4.0-601 DISTVERSIONSUFFIX= -ga2574fcda -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science PKGNAMESUFFIX= -core MAINTAINER= yuri@FreeBSD.org COMMENT= Software for modeling of musculoskeletal structures LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libdocopt.so:devel/docopt.cpp \ libSimTKcommon.so:science/simbody USES= blaslapack:openblas cmake compiler:c++11-lib fortran gl xorg # fortran only for simbody/openblas USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tl}-org GH_PROJECT= ${PORTNAME:tl}-core USE_GL= gl glu glut USE_XORG= xi xmu USE_LDCONFIG= yes CXXFLAGS+= -I${LOCALBASE}/include/docopt CONFIGURE_ENV+= SIMBODY_HOME=${LOCALBASE} CMAKE_OFF= OPENSIM_COPY_DEPENDENCIES DO_TESTING OPTIONS_DEFINE= PYTHON JAVA DOCS OPTIONS_DEFAULT= PYTHON JAVA OPTIONS_SUB= yes PYTHON_CMAKE_BOOL= BUILD_PYTHON_WRAPPING PYTHON_USES= python PYTHON_BUILD_DEPENDS= swig3.0:devel/swig30 JAVA_CMAKE_BOOL= BUILD_JAVA_WRAPPING JAVA_CMAKE_ON= -DJAVA_AWT_LIBRARY=${LOCALBASE}/openjdk8/jre/lib/amd64/libawt.so \ -DJAVA_JVM_LIBRARY=${LOCALBASE}/openjdk8/jre/lib/amd64/server/libjvm.so \ -DJAVA_INCLUDE_PATH=${LOCALBASE}/openjdk8/include JAVA_USE= JAVA=yes JAVA_BUILD_DEPENDS= swig3.0:devel/swig30 DOCS_CMAKE_BOOL= INSTALL_DOCS PORTDOCS= * do-test: # 4 testcases are known to fail: https://github.com/opensim-org/opensim-core/issues/2379 @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DDO_TESTING=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include Index: head/science/py-dlib/Makefile =================================================================== --- head/science/py-dlib/Makefile (revision 524641) +++ head/science/py-dlib/Makefile (revision 524642) @@ -1,56 +1,56 @@ # $FreeBSD$ PORTNAME= dlib DISTVERSION= 19.17 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science devel math python MASTER_SITES= http://dlib.net/files/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= arrowd@FreeBSD.org COMMENT= Machine learning framework written in C++ (python bindings) LICENSE= BSL LICENSE_FILE= ${WRKSRC}/dlib/LICENSE.txt BUILD_DEPENDS= cmake:devel/cmake LIB_DEPENDS= ${PY_BOOST} USES= compiler:c++11-lang pkgconfig python shebangfix \ tar:bzip2 USE_PYTHON= autoplist distutils SHEBANG_FILES= python_examples/*.py OPTIONS_DEFINE= X11 JPEG PNG GIF SQLITE BLASLAPACK AVX OPTIONS_DEFAULT= X11 JPEG PNG GIF SQLITE BLASLAPACK_DESC= Use Blas and Lapack libraries from ports AVX_DESC= Use AVX instructions if supported by CPU X11_USES= xorg X11_USE= xorg=x11 JPEG_USES= jpeg JPEG_VARS_OFF= jpegargs="--no DLIB_JPEG_SUPPORT" PNG_LIB_DEPENDS= libpng.so:graphics/png PNG_VARS_OFF= pngargs="--no DLIB_PNG_SUPPORT" GIF_LIB_DEPENDS= libgif.so:graphics/giflib GIF_VARS_OFF= gifargs="--no DLIB_GIF_SUPPORT" SQLITE_USES= sqlite SQLITE_VARS_OFF= sqliteargs="--no DLIB_LINK_WITH_SQLITE3" BLASLAPACK_USES= blaslapack BLASLAPACK_VARS_OFF= blaslapackargs="--no DLIB_USE_BLAS --no DLIB_USE_LAPACK --no DLIB_USE_MKL_FFT" AVX_VARS= avxargs="--yes USE_AVX_INSTRUCTIONS" AVX_VARS_OFF= avxargs="--no USE_AVX_INSTRUCTIONS" PYDISTUTILS_BUILDARGS= --set BOOST_PYTHON_SUFFIX:STRING=${PYTHON_SUFFIX} ${X11ARGS} ${JPEGARGS} ${PNGARGS} ${GIFARGS} ${SQLITEARGS} ${BLASLAPACKARGS} ${AVXARGS} ${BLASLAPACK} post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/dlib.so .include Index: head/science/py-gpaw/Makefile =================================================================== --- head/science/py-gpaw/Makefile (revision 524641) +++ head/science/py-gpaw/Makefile (revision 524642) @@ -1,34 +1,34 @@ # $FreeBSD$ PORTNAME= gpaw DISTVERSION= 1.5.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= DFT and beyond within the projector-augmented wave method in chemistry LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYNUMPY} LIB_DEPENDS= libmpich.so:net/mpich \ libopenblas.so:math/openblas \ libxc.so:science/libxc RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYNUMPY} USES= gettext-runtime localbase python:3.5+ shebangfix USE_PYTHON= distutils concurrent autoplist SHEBANG_FILES= tools/* post-patch: @${REINPLACE_CMD} "s|'/usr/local/|'${LOCALBASE}/|" ${WRKSRC}/gpaw/__init__.py post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/gpaw-python ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_gpaw.so .include Index: head/science/py-phono3py/Makefile =================================================================== --- head/science/py-phono3py/Makefile (revision 524641) +++ head/science/py-phono3py/Makefile (revision 524642) @@ -1,33 +1,33 @@ # $FreeBSD$ PORTNAME= phono3py DISTVERSION= 1.13.3.27 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Software to calculate phonon-phonon interaction and related properties LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>=1.13.2:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR} \ ${LOCALBASE}/include/lapacke.h:math/lapacke \ openmp>0:devel/openmp RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}phonopy>=1.13.2:science/py-phonopy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}yaml>0:devel/py-yaml@${PY_FLAVOR} \ openmp>0:devel/openmp USES= blaslapack:openblas localbase python USE_PYTHON= distutils cython autoplist .include Index: head/science/qmcpack/Makefile =================================================================== --- head/science/qmcpack/Makefile (revision 524641) +++ head/science/qmcpack/Makefile (revision 524642) @@ -1,40 +1,40 @@ # $FreeBSD$ PORTNAME= qmcpack DISTVERSIONPREFIX= v DISTVERSION= 3.8.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org COMMENT= Many-body ab initio Quantum Monte Carlo code for quantum chemstry LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= undefined reference to `__atomic_load' LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libfftw3.so:math/fftw3 \ libhdf5.so:science/hdf5 \ libmpich.so:net/mpich \ libomp.so:devel/openmp \ libopenblas.so:math/openblas \ libsz.so:science/szip USES= cmake compiler:c++11-lang fortran gnome localbase:ldflags pkgconfig python:build USE_GITHUB= yes GH_ACCOUNT= ${PORTNAME:tu} USE_GNOME= libxml2 PROGS= convert4qmc qmc-check-affinity qmc-extract-eshdf-kvectors qmc-get-supercell qmcpack PLIST_FILES= ${PROGS:C/^/bin\//} BINARY_ALIAS= python=${PYTHON_CMD} do-install: .for p in ${PROGS} ${INSTALL_PROGRAM} ${BUILD_WRKSRC}/bin/${p} ${STAGEDIR}${PREFIX}/bin .endfor .include Index: head/science/simbody/Makefile =================================================================== --- head/science/simbody/Makefile (revision 524641) +++ head/science/simbody/Makefile (revision 524642) @@ -1,52 +1,53 @@ # $FreeBSD$ PORTNAME= simbody DISTVERSIONPREFIX= Simbody- DISTVERSION= 3.7 +PORTREVISION= 1 CATEGORIES= science biology PATCH_SITES= https://github.com/${PORTNAME}/${PORTNAME}/commit/ PATCHFILES= 1b306f66bcd15e9bf6b27882e2daa6375ac4cd2e.patch:-p1 MAINTAINER= yuri@FreeBSD.org COMMENT= Multibody dynamics library for (bio)mechanical systems simulation LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libopenblas.so:math/openblas USES= blaslapack:openblas cmake compiler:c++11-lang fortran # fortran only for openblas USE_GITHUB= yes USE_LDCONFIG= yes CMAKE_OFF= BUILD_TESTING CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DFREEBSD_EXAMPLESDIR=${EXAMPLESDIR} OPTIONS_DEFINE= DOCS VISUALIZER EXAMPLE_PROGRAMS # EXAMPLE_PROGRAMS significanly increases the build time and package size, so it is not called EXAMPLES to prevent it from being installed by default OPTIONS_DEFAULT= VISUALIZER OPTIONS_SUB= yes DOCS_CMAKE_BOOL= INSTALL_DOCS VISUALIZER_DESC= Build the visualizer component VISUALIZER_CMAKE_BOOL= BUILD_VISUALIZER VISUALIZER_USES= gl xorg VISUALIZER_USE= GL=gl,glu,glut XORG=xi,xmu EXAMPLE_PROGRAMS_DESC= Build and install example programs EXAMPLE_PROGRAMS_CMAKE_BOOL= BUILD_EXAMPLES PORTDOCS= * # this port installs examples into ${EXAMPLESDIR} when EXAMPLE_PROGRAMS=ON, but check-plist doesn't complain for some reason post-install-DOCS-on: # https://github.com/simbody/simbody/issues/652 @${RMDIR} ${STAGEDIR}${DOCSDIR}/api do-test: @cd ${BUILD_WRKSRC} && \ ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DBUILD_TESTING=ON ${CMAKE_SOURCE_PATH} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test .include