Index: head/biology/abyss/Makefile =================================================================== --- head/biology/abyss/Makefile (revision 523490) +++ head/biology/abyss/Makefile (revision 523491) @@ -1,36 +1,38 @@ # $FreeBSD$ PORTNAME= abyss DISTVERSION= 2.2.3 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE +BROKEN_i386= result of comparison of constant 18446744073709551615 with expression of type 'size_t', see https://github.com/bcgsc/abyss/issues/310 + BUILD_DEPENDS= ${LOCALBASE}/include/boost/version.hpp:devel/boost-libs \ ghc:lang/ghc \ pandoc:textproc/hs-pandoc # pandoc is required just for one man page: abyss-sealer LIB_DEPENDS= libffi.so:devel/libffi \ libgmp.so:math/gmp \ libomp.so:devel/openmp RUN_DEPENDS= bash:shells/bash \ gmake:devel/gmake USES= autoreconf compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite SHEBANG_FILES= bin/${PORTNAME}-* DataBase/abyss-db-txt SHEBANG_LANG= make make_OLD_CMD= /usr/bin/make make_CMD= ${PREFIX}/bin/gmake USE_GITHUB= yes GH_ACCOUNT= bcgsc GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs OPTIONS_DEFINE= DOCS PORTDOCS= * .include