Index: head/biology/ngs-sdk/Makefile =================================================================== --- head/biology/ngs-sdk/Makefile (revision 523284) +++ head/biology/ngs-sdk/Makefile (revision 523285) @@ -1,40 +1,40 @@ # $FreeBSD$ PORTNAME= ngs -DISTVERSION= 2.10.1 +DISTVERSION= 2.10.2 CATEGORIES= biology PKGNAMESUFFIX= -sdk MAINTAINER= yuri@FreeBSD.org COMMENT= Tools and libraries for using data in the INSDC Sequence Read Archives LICENSE= PD LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_aarch64= fails to configure: unsupported architecture 'FreeBSD' NOT_FOR_ARCHS= powerpc64 NOT_FOR_ARCHS_REASON= os-arch.prl needs to be taught about powerpc64 USES= gmake perl5 GNU_CONFIGURE= yes USE_GITHUB= yes GH_ACCOUNT= ncbi ALL_TARGET= default USE_LDCONFIG= yes CFLAGS+= -I${WRKSRC}/ngs-sdk/ngs/unix/${ARCH}/ post-patch: @cd ${WRKSRC}/ngs-sdk/ngs/unix && ${LN} -s x86_64 amd64 do-install: cd ${WRKSRC}/ngs-sdk && ${COPYTREE_SHARE} ngs ${STAGEDIR}/${PREFIX}/include ${INSTALL_PROGRAM} ${WRKSRC}/ngs-sdk/${ARCH}-portbld-*/ngs-sdk/FreeBSD/clang/${ARCH}/rel/lib/libngs-sdk.so.${DISTVERSION} ${STAGEDIR}${PREFIX}/lib/ cd ${STAGEDIR}${PREFIX}/lib/ && \ ${LN} -s libngs-sdk.so.${DISTVERSION} libngs-sdk.so.${DISTVERSION:R:R} && \ ${LN} -s libngs-sdk.so.${DISTVERSION:R:R} libngs-sdk.so .for l in libngs-c++.a libngs-adapt-c++.a ${INSTALL_LIB} ${WRKSRC}/ngs-sdk/${ARCH}-portbld-*/ngs-sdk/FreeBSD/clang/${ARCH}/rel/lib/${l}.${PORTVERSION} ${STAGEDIR}${PREFIX}/lib/${l} .endfor .include Index: head/biology/ngs-sdk/distinfo =================================================================== --- head/biology/ngs-sdk/distinfo (revision 523284) +++ head/biology/ngs-sdk/distinfo (revision 523285) @@ -1,3 +1,3 @@ -TIMESTAMP = 1578794673 -SHA256 (ncbi-ngs-2.10.1_GH0.tar.gz) = c1fde07b7b7fb9f0ab63adc3791146c36821a533def054df214c28b676e70309 -SIZE (ncbi-ngs-2.10.1_GH0.tar.gz) = 1093865 +TIMESTAMP = 1579244023 +SHA256 (ncbi-ngs-2.10.2_GH0.tar.gz) = 613be73b31474b7e3d616ad3d7fea3a6a598a9b3695309a1b1e0bc4224248447 +SIZE (ncbi-ngs-2.10.2_GH0.tar.gz) = 1093897 Index: head/biology/ngs-sdk/pkg-plist =================================================================== --- head/biology/ngs-sdk/pkg-plist (revision 523284) +++ head/biology/ngs-sdk/pkg-plist (revision 523285) @@ -1,95 +1,95 @@ include/ngs/Alignment.hpp include/ngs/AlignmentIterator.hpp include/ngs/ErrorMsg.hpp include/ngs/Fragment.hpp include/ngs/FragmentIterator.hpp include/ngs/Package.hpp include/ngs/Pileup.hpp include/ngs/PileupEvent.hpp include/ngs/PileupEventIterator.hpp include/ngs/PileupIterator.hpp include/ngs/Read.hpp include/ngs/ReadCollection.hpp include/ngs/ReadGroup.hpp include/ngs/ReadGroupIterator.hpp include/ngs/ReadIterator.hpp include/ngs/Reference.hpp include/ngs/ReferenceIterator.hpp include/ngs/ReferenceSequence.hpp include/ngs/Statistics.hpp include/ngs/StringRef.hpp include/ngs/adapter/AlignmentItf.hpp include/ngs/adapter/ErrorMsg.hpp include/ngs/adapter/FragmentItf.hpp include/ngs/adapter/PileupEventItf.hpp include/ngs/adapter/PileupItf.hpp include/ngs/adapter/ReadCollectionItf.hpp include/ngs/adapter/ReadGroupItf.hpp include/ngs/adapter/ReadItf.hpp include/ngs/adapter/Refcount.hpp include/ngs/adapter/ReferenceItf.hpp include/ngs/adapter/ReferenceSequenceItf.hpp include/ngs/adapter/StatisticsItf.hpp include/ngs/adapter/StringItf.hpp include/ngs/adapter/defs.h include/ngs/inl/Alignment.hpp include/ngs/inl/AlignmentIterator.hpp include/ngs/inl/Fragment.hpp include/ngs/inl/FragmentIterator.hpp include/ngs/inl/Package.hpp include/ngs/inl/Pileup.hpp include/ngs/inl/PileupEvent.hpp include/ngs/inl/PileupEventIterator.hpp include/ngs/inl/PileupIterator.hpp include/ngs/inl/Read.hpp include/ngs/inl/ReadCollection.hpp include/ngs/inl/ReadGroup.hpp include/ngs/inl/ReadGroupIterator.hpp include/ngs/inl/ReadIterator.hpp include/ngs/inl/Reference.hpp include/ngs/inl/ReferenceIterator.hpp include/ngs/inl/ReferenceSequence.hpp include/ngs/inl/Statistics.hpp include/ngs/inl/StringRef.hpp include/ngs/itf/AlignmentItf.h include/ngs/itf/AlignmentItf.hpp include/ngs/itf/ErrBlock.h include/ngs/itf/ErrBlock.hpp include/ngs/itf/ErrorMsg.hpp include/ngs/itf/FragmentItf.h include/ngs/itf/FragmentItf.hpp include/ngs/itf/PackageItf.hpp include/ngs/itf/PileupEventItf.h include/ngs/itf/PileupEventItf.hpp include/ngs/itf/PileupItf.h include/ngs/itf/PileupItf.hpp include/ngs/itf/ReadCollectionItf.h include/ngs/itf/ReadCollectionItf.hpp include/ngs/itf/ReadGroupItf.h include/ngs/itf/ReadGroupItf.hpp include/ngs/itf/ReadItf.h include/ngs/itf/ReadItf.hpp include/ngs/itf/Refcount.h include/ngs/itf/Refcount.hpp include/ngs/itf/ReferenceItf.h include/ngs/itf/ReferenceItf.hpp include/ngs/itf/ReferenceSequenceItf.h include/ngs/itf/ReferenceSequenceItf.hpp include/ngs/itf/StatisticsItf.h include/ngs/itf/StatisticsItf.hpp include/ngs/itf/StringItf.h include/ngs/itf/StringItf.hpp include/ngs/itf/VTable.h include/ngs/itf/VTable.hpp include/ngs/itf/defs.h include/ngs/unix/amd64 include/ngs/unix/fat86/atomic32.h include/ngs/unix/i386/atomic32.h include/ngs/unix/x86_64/atomic32.h include/ngs/win/atomic32.h include/ngs/win/stdbool.h lib/libngs-adapt-c++.a lib/libngs-c++.a lib/libngs-sdk.so lib/libngs-sdk.so.2 -lib/libngs-sdk.so.2.10.1 +lib/libngs-sdk.so.2.10.2