Index: head/biology/p5-Bio-Variation/Makefile =================================================================== --- head/biology/p5-Bio-Variation/Makefile (revision 522439) +++ head/biology/p5-Bio-Variation/Makefile (revision 522440) @@ -1,30 +1,28 @@ # Created by: Po-Chuan Hsieh # $FreeBSD$ PORTNAME= Bio-Variation -PORTVERSION= 1.7.4 +PORTVERSION= 1.7.5 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- MAINTAINER= sunpoet@FreeBSD.org COMMENT= BioPerl variation-related functionality LICENSE= ART10 GPLv1+ LICENSE_COMB= dual LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${RUN_DEPENDS} -RUN_DEPENDS= p5-Bio-DB-EMBL>=0:biology/p5-Bio-DB-EMBL \ - p5-Bio-DB-NCBIHelper>=0:biology/p5-Bio-DB-NCBIHelper \ - p5-BioPerl>=0:biology/p5-BioPerl \ +RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \ p5-IO-String>=0:devel/p5-IO-String \ p5-XML-Twig>=0:textproc/p5-XML-Twig \ p5-XML-Writer>=0.400:textproc/p5-XML-Writer USES= perl5 USE_PERL5= configure NO_ARCH= yes .include Index: head/biology/p5-Bio-Variation/distinfo =================================================================== --- head/biology/p5-Bio-Variation/distinfo (revision 522439) +++ head/biology/p5-Bio-Variation/distinfo (revision 522440) @@ -1,3 +1,3 @@ -TIMESTAMP = 1575793787 -SHA256 (Bio-Variation-1.7.4.tar.gz) = b5dc609c5bbd39937cdce0e5cbf299a2e2cf30c235fe6f71c904ae7dc1697b56 -SIZE (Bio-Variation-1.7.4.tar.gz) = 60449 +TIMESTAMP = 1578501169 +SHA256 (Bio-Variation-1.7.5.tar.gz) = 4bffdd060b5e793919f700e46056eb3f0195ed4df2e60ad68b383c31e51f824f +SIZE (Bio-Variation-1.7.5.tar.gz) = 60430 Index: head/biology/p5-Bio-Variation/pkg-plist =================================================================== --- head/biology/p5-Bio-Variation/pkg-plist (revision 522439) +++ head/biology/p5-Bio-Variation/pkg-plist (revision 522440) @@ -1,27 +1,26 @@ bin/bp_flanks %%SITE_PERL%%/Bio/Variation.pm %%SITE_PERL%%/Bio/Variation/AAChange.pm %%SITE_PERL%%/Bio/Variation/AAReverseMutate.pm %%SITE_PERL%%/Bio/Variation/Allele.pm %%SITE_PERL%%/Bio/Variation/DNAMutation.pm %%SITE_PERL%%/Bio/Variation/IO.pm %%SITE_PERL%%/Bio/Variation/IO/flat.pm %%SITE_PERL%%/Bio/Variation/IO/xml.pm -%%SITE_PERL%%/Bio/Variation/README %%SITE_PERL%%/Bio/Variation/RNAChange.pm %%SITE_PERL%%/Bio/Variation/SNP.pm %%SITE_PERL%%/Bio/Variation/SeqDiff.pm %%SITE_PERL%%/Bio/Variation/VariantI.pm %%PERL5_MAN1%%/bp_flanks.1.gz %%PERL5_MAN3%%/Bio::Variation.3.gz %%PERL5_MAN3%%/Bio::Variation::AAChange.3.gz %%PERL5_MAN3%%/Bio::Variation::AAReverseMutate.3.gz %%PERL5_MAN3%%/Bio::Variation::Allele.3.gz %%PERL5_MAN3%%/Bio::Variation::DNAMutation.3.gz %%PERL5_MAN3%%/Bio::Variation::IO.3.gz %%PERL5_MAN3%%/Bio::Variation::IO::flat.3.gz %%PERL5_MAN3%%/Bio::Variation::IO::xml.3.gz %%PERL5_MAN3%%/Bio::Variation::RNAChange.3.gz %%PERL5_MAN3%%/Bio::Variation::SNP.3.gz %%PERL5_MAN3%%/Bio::Variation::SeqDiff.3.gz %%PERL5_MAN3%%/Bio::Variation::VariantI.3.gz