Index: head/biology/bedtools/Makefile
===================================================================
--- head/biology/bedtools/Makefile	(revision 520413)
+++ head/biology/bedtools/Makefile	(revision 520414)
@@ -1,39 +1,39 @@
 # $FreeBSD$
 
 PORTNAME=		bedtools
 DISTVERSIONPREFIX=	v
-DISTVERSION=		2.29.1
+DISTVERSION=		2.29.2
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Toolset for genome set arithmetic such as intersect, union
 
 LICENSE=	GPLv2
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 TEST_DEPENDS=	bash:shells/bash
 
 USES=		compiler:c++11-lang gmake python
 USE_GITHUB=	yes
 GH_ACCOUNT=	arq5x
 GH_PROJECT=	bedtools2
 
 post-extract:
 # Avoid conflict with C++20 <version> by adding .txt suffix
 	@${MV} ${WRKSRC}/src/utils/gzstream/version \
 		${WRKSRC}/src/utils/gzstream/version.txt
 
 pre-configure:
 	@${REINPLACE_CMD} -e 's|python|${PYTHON_CMD}|g' ${WRKSRC}/Makefile
 	@${REINPLACE_CMD} -e 's|@\$$(CXX)|$$(CXX)|g' \
 		${WRKSRC}/*/Makefile \
 		${WRKSRC}/*/*/Makefile \
 		${WRKSRC}/*/*/*/Makefile
 
 post-install:
 	${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/bedtools
 
 do-test:
 	(cd ${WRKSRC}/test && bash test.sh)
 
 .include <bsd.port.mk>
Index: head/biology/bedtools/distinfo
===================================================================
--- head/biology/bedtools/distinfo	(revision 520413)
+++ head/biology/bedtools/distinfo	(revision 520414)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1576008395
-SHA256 (arq5x-bedtools2-v2.29.1_GH0.tar.gz) = 504c0992caa027ec1840ea9ca6909f7e59e7ebc1a2b422233b35abb9592aff5c
-SIZE (arq5x-bedtools2-v2.29.1_GH0.tar.gz) = 20639166
+TIMESTAMP = 1576701335
+SHA256 (arq5x-bedtools2-v2.29.2_GH0.tar.gz) = bc2f36b5d4fc9890c69f607d54da873032628462e88c545dd633d2c787a544a5
+SIZE (arq5x-bedtools2-v2.29.2_GH0.tar.gz) = 20638840