Index: head/biology/unanimity/Makefile =================================================================== --- head/biology/unanimity/Makefile (revision 518556) +++ head/biology/unanimity/Makefile (revision 518557) @@ -1,48 +1,46 @@ # $FreeBSD$ PORTNAME= unanimity DISTVERSIONPREFIX= v DISTVERSION= 3.4.1 PORTREVISION= 3 CATEGORIES= biology # As of March 2018, unanimity is no longer open source. # See https://github.com/PacificBiosciences/ccs. MAINTAINER= ports@FreeBSD.org COMMENT= Pacific Biosciences consensus library and applications -BROKEN= unfetchable - LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? # Very sensitive to pbbam and pbcopper versions! # Fully test new combinations and upgrade them together. BUILD_DEPENDS= seqan>=2.4.0:biology/seqan \ swig30>=3.0:devel/swig30 \ ${PYNUMPY} LIB_DEPENDS= libhts.so:biology/htslib \ libboost_regex.so:devel/boost-libs \ libpbbam.so.0.18.0:biology/pbbam \ libpbcopper.so.0.4.1:biology/pbcopper RUN_DEPENDS= ${PYNUMPY} # Meson needs BOOST_ROOT=${LOCALBASE} # https://github.com/mesonbuild/meson/issues/2239 USES= compiler:c++14-lang localbase meson pkgconfig python:2.7 USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= PacificBiosciences CFLAGS_i386= -msse2 -Wno-c++11-narrowing LDFLAGS+= -lexecinfo post-install: ${RLN} ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0.0 \ ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0 ${RLN} ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0.0 \ ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3 .include